Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013236

Physical Location & Seq

Genomic Coordinates Forward (+)

8435489 .. 8438274

Gene Structure 2786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCACGACCACCACATCTCCTCCACCTTCCAAATCCACACCCACCAAACTCAACCCTATCCTCACCACCATTACCGTTGGTCCACGACCCAAAATCGCCACCGGTTTGCTATCCCTCCTCGGGTCCTTCGACCGCGACGAGTATTCCTTATTACACGGCGGTGACCTCAACGTTCTCCGCTACCGCCCAATTGATCGGGCTCCGCCACAGAAGAAATTGACTATGGCTTCTGCTTGTTGCCGCCTTATCTCAACTACCTCCTCAGCCACTGTTACCGCCATTTCCTCCTTCCCTCCAAAACCAAACCCCCCAATTTCAAATCACCGCCGACTCCCAAACCTCAGTCGCAGAGACCTTGCTCTGCTCTCCTTCATCACTCTCGTCCCTCCCCTCTCTCGACCCGACCCGGCTTTCGGATTCGGCATTTTGGATGATACGAATCAGGAGATAGAGGAGGTTCAGAGACTGTTCAGATCTGCCGCCAGGGATTGCGTTGTGGAAGACCGGAGTTCATTCGTTGCGTTTCAAGCCAATACTGGTGTTGAGGTTTGCACATTCCGTCTGGTTGTAAAAAATGCTGCATCATTACTTGGTAATAAGGATCCTGTAAAATTGGAAGCGGAATCTATGCTCAACGATCTTATAAGATCATTCAGCTCTCTTAATGTATTGGTAAATGAGAGTGATGTTCAACTTGCCTCCCAAAGAAAGAAGGTAGCAGATTCACTCATGGATGCCATATCATCCCTTGACAAATTTGAGCAGGGAATCAAGGACTGCCTTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

28.77

Weight (kDa)

8.61

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42765
fragaria_vesca	FvH4_2g39780
malus_domestica	MD08G1031600.v1.1 MD15G1027300.v1.1
prunus_persica	Prupe.1G379100_v2.0.a1 Prupe.1G379100_v2.0.a1
pyrus_communis	pycom08g02490 pycom15g02330
rosa_chinensis	RchiOBHm_Chr6g0301081
rosa_multiflora	Rmu_sc0003168.1_g000013 Rmu_sc0035551.1_g000004
rosa_roxburghii	Rroxscaffold_172G00445580 Rroxscaffold_7G00167200
rosa_rugosa	Rorug06G0300600
rosa_samantha	Rh6AG414500 Rh6BG421400 Rh6CG429100 Rh6DG414400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AccII	CGCG	1 cut(s)	138
AclI	AACGTT	1 cut(s)	174
AclWI	GGATC	2 cut(s)	599, 612
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	758
AfiI	CCNNNNNNNGG	2 cut(s)	123, 416
AgeI	ACCGGT	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	321, 530, 695, 788
AjnI	CCWGG	1 cut(s)	485
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	660, 791
AluI	AGCT	2 cut(s)	660, 791
Alw26I	GTCTC	2 cut(s)	348, 460
AlwI	GGATC	2 cut(s)	599, 612
AlwNI	CAGNNNCTG	2 cut(s)	272, 469
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	1 cut(s)	758
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
AsiGI	ACCGGT	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	83, 126
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	3 cut(s)	58, 176, 317
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	83, 126
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	510
BbvCI	CCTCAGC	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	568
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	2 cut(s)	348, 460
BglII	AGATCT	1 cut(s)	476
BisI	GCNGC	3 cut(s)	244, 483, 582
BlsI	GCNGC	3 cut(s)	245, 484, 583
Bme1390I	CCNGG	2 cut(s)	410, 487
Bme18I	GGWCC	2 cut(s)	83, 126
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	83, 126
BmiI	GGNNCC	3 cut(s)	127, 204, 606
BmrFI	CCNGG	2 cut(s)	410, 487
BmsI	GCATC	2 cut(s)	593, 727
BpiI	GAAGAC	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	121, 486
BsaWI	WCCGGW	2 cut(s)	104, 507
BsaXI	ACNNNNNCTCC	3 cut(s)	7, 34, 37
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 416
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	544
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	2 cut(s)	121, 486
BseGI	GGATG	3 cut(s)	439, 742, 746
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	123, 416
BseMII	CTCAG	2 cut(s)	279, 358
BseNI	ACTGG	1 cut(s)	544
BseRI	GAGGAG	4 cut(s)	12, 110, 253, 470
BseXI	GCAGC	1 cut(s)	568
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	105, 410, 508
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	123, 416
BsmAI	GTCTC	2 cut(s)	348, 460
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	5 cut(s)	196, 476, 604, 640, 650
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	278, 357
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	3 cut(s)	127, 204, 606
BspPI	GGATC	2 cut(s)	599, 612
BspTNI	GGTCTC	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	544
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	121, 486
BssMI	GATC	5 cut(s)	196, 476, 604, 640, 650
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	3 cut(s)	79, 274, 471
BstDEI	CTNAG	2 cut(s)	265, 344
BstEII	GGTNACC	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	439, 742, 746
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	5 cut(s)	199, 479, 607, 643, 653
BstMAI	GTCTC	2 cut(s)	348, 460
BstMBI	GATC	5 cut(s)	196, 476, 604, 640, 650
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	487
BstPI	GGTNACC	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	408, 485
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	2 cut(s)	476, 604
BstYI	RGATCY	2 cut(s)	476, 604
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	439, 742, 746
BtsIMutI	CAGTG	1 cut(s)	270
CaiI	CAGNNNCTG	2 cut(s)	272, 469
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	83, 126
CspAI	ACCGGT	1 cut(s)	104
CviAII	CATG	1 cut(s)	733
CviJI	RGCY	8 cut(s)	5, 203, 230, 269, 413, 533, 660, 791
CviKI_1	RGCY	8 cut(s)	5, 203, 230, 269, 413, 533, 660, 791
DdeI	CTNAG	2 cut(s)	265, 344
DpnI	GATC	5 cut(s)	198, 478, 606, 642, 652
DpnII	GATC	5 cut(s)	196, 476, 604, 640, 650
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	83, 126
Eco88I	CYCGRG	1 cut(s)	122
Eco91I	GGTNACC	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	1 cut(s)	736
FaiI	YATR	5 cut(s)	227, 632, 647, 734, 743
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	1 cut(s)	732
Fnu4HI	GCNGC	3 cut(s)	244, 483, 582
FokI	GGATG	3 cut(s)	446, 733, 749
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	3 cut(s)	244, 483, 582
GluI	GCNGC	3 cut(s)	244, 483, 582
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	105, 410, 508
Hin1II	CATG	1 cut(s)	736
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	6 cut(s)	333, 420, 442, 626, 725, 771
HpaII	CCGG	3 cut(s)	105, 410, 508
HphI	GGTGA	3 cut(s)	58, 176, 317
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	3 cut(s)	419, 465, 476
Hpy188III	TCNNGA	2 cut(s)	399, 446
Hpy8I	GTNNAC	1 cut(s)	86
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	5 cut(s)	39, 139, 301, 382, 709
HpyCH4III	ACNGT	3 cut(s)	79, 274, 471
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	555, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	2 cut(s)	265, 344
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	196, 476, 604, 640, 650
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	2 cut(s)	593, 727
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	164, 274
MalI	GATC	5 cut(s)	198, 478, 606, 642, 652
MboI	GATC	5 cut(s)	196, 476, 604, 640, 650
MboII	GAAGA	2 cut(s)	226, 515
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	2 cut(s)	476, 604
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	192, 218, 315, 614, 758
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	327
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	105, 410, 508
MspR9I	CCNGG	2 cut(s)	410, 487
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	487
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	530
NciI	CCSGG	1 cut(s)	410
NdeII	GATC	5 cut(s)	196, 476, 604, 640, 650
NlaIII	CATG	1 cut(s)	736
NlaIV	GGNNCC	3 cut(s)	127, 204, 606
NmuCI	GTSAC	1 cut(s)	164
OliI	CACNNNNGTG	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 138
PfeI	GAWTC	5 cut(s)	420, 442, 626, 725, 771
PinAI	ACCGGT	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	245, 484, 583
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PpuMI	RGGWCCY	1 cut(s)	126
PsiI	TTATAA	1 cut(s)	647
Psp1406I	AACGTT	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	485
PspEI	GGTNACC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	3 cut(s)	127, 204, 606
PspPI	GGNCC	2 cut(s)	83, 126
PspPPI	RGGWCCY	1 cut(s)	126
PstNI	CAGNNNCTG	2 cut(s)	272, 469
PsuI	RGATCY	2 cut(s)	476, 604
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	3 cut(s)	244, 483, 582
Sau3AI	GATC	5 cut(s)	196, 476, 604, 640, 650
Sau96I	GGNCC	2 cut(s)	83, 126
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	410, 487
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	2 cut(s)	593, 727
SinI	GGWCC	2 cut(s)	83, 126
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	5 cut(s)	192, 218, 315, 614, 758
StyD4I	CCNGG	2 cut(s)	408, 485
TaaI	ACNGT	3 cut(s)	79, 274, 471
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	132, 400
TasI	AATT	5 cut(s)	192, 218, 315, 614, 758
TauI	GCSGC	2 cut(s)	246, 485
TfiI	GAWTC	5 cut(s)	420, 442, 626, 725, 771
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	364, 504
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	83, 126
XapI	RAATTY	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.