Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013236

Physical Location & Seq

Genomic Coordinates Forward (+)

2265550 .. 2270474

Gene Structure 4925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1031600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAGTTGCTTCGCGCCGCCTTATCTCCAGCTCGGCCTCATCCACTGTAACCGCCATTTCATCCTTCCCTCCAAAATCAAAAACCCTAATTTCAAATCCGCACGCTTCCCCCAATCTTCAGCTCCCAAAACGCAGTCGTAGAGACGTCGCTTTGCTCTCCCTCATCGCTCTCATCCCTTCACTCTTCCGACCCGGCCCGGCATCCGGACTTTCCTTCGGCATTTCAGGACCAAAGGATTGGCTCCGCGAGCAGAAGAAGAAGGCCTCCAGGTTCCTCTTGGCCCCGATTGATGCCTCCCGTGAGAGCCTCGTCGCGGCTTATCAATTACTCACGGCTACAGATTCGGATTATACGAACAAGGAGATGGAGGAGGTTCAGAGATTGTTTAGATCATCTGCGAGGGATTGTGTTATAGAAGATAGGAACTCGTTTGTTGCATTTCAAGCCAATACGGGTGTTGAGGTTTGCACATTCCGTTTGGTTGTAAAGAATGCGTCGTCGTTGCTTGGTGATAAGGATCCTGTAAAATTGGAAGCCGAGTCTTTGTTAAATGATCTTATAAGATCATTCACTTCTCTTAATGGTCTGGTAAATGAGACTGATGTTCAATTTGCCGCTGAAAGAAAGAAGGTTGCAGATTATCTCATGGATACCATATCATCCCTAGACAAATTTGAGCAGGGAATCAAGGACTGCCTTGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

25.89

Weight (kDa)

8.74

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42765
fragaria_vesca	FvH4_2g39780
malus_domestica	MD08G1031600.v1.1 MD15G1027300.v1.1
prunus_persica	Prupe.1G379100_v2.0.a1 Prupe.1G379100_v2.0.a1
pyrus_communis	pycom08g02490 pycom15g02330
rosa_chinensis	RchiOBHm_Chr6g0301081
rosa_multiflora	Rmu_sc0003168.1_g000013 Rmu_sc0035551.1_g000004
rosa_roxburghii	Rroxscaffold_172G00445580 Rroxscaffold_7G00167200
rosa_rugosa	Rorug06G0300600
rosa_samantha	Rh6AG414500 Rh6BG421400 Rh6CG429100 Rh6DG414400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	563
AatII	GACGTC	1 cut(s)	150
AccII	CGCG	3 cut(s)	16, 249, 317
AccIII	TCCGGA	1 cut(s)	206
AciI	CCGC	6 cut(s)	19, 54, 101, 247, 317, 618
AclWI	GGATC	2 cut(s)	515, 528
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	206, 316
AgsI	TTSAA	4 cut(s)	96, 446, 611, 704
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	3 cut(s)	33, 124, 707
AluI	AGCT	3 cut(s)	33, 124, 707
Alw26I	GTCTC	2 cut(s)	138, 593
AlwI	GGATC	2 cut(s)	515, 528
Aor13HI	TCCGGA	1 cut(s)	206
AoxI	GGCC	4 cut(s)	36, 196, 264, 282
ApoI	RAATTY	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	3 cut(s)	197, 230, 283
AsuC2I	CCSGG	2 cut(s)	195, 200
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	520
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	351
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	646
BcnI	CCSGG	2 cut(s)	195, 200
BcoDI	GTCTC	2 cut(s)	138, 593
BfaI	CTAG	1 cut(s)	668
BfmI	CTRYAG	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	646
BisI	GCNGC	3 cut(s)	19, 318, 618
BlsI	GCNGC	3 cut(s)	20, 319, 619
Bme1390I	CCNGG	3 cut(s)	195, 200, 271
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	197, 230, 283
BmiI	GGNNCC	4 cut(s)	245, 275, 285, 522
BmrFI	CCNGG	3 cut(s)	195, 200, 271
BmsI	GCATC	2 cut(s)	212, 283
BpmI	CTGGAG	2 cut(s)	13, 253
BpuMI	CCSGG	2 cut(s)	195, 200
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 316
Bse8I	GATNNNNATC	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	271
BseGI	GGATG	5 cut(s)	41, 62, 174, 203, 662
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	206, 316
BseRI	GAGGAG	1 cut(s)	386
Bsh1236I	CGCG	3 cut(s)	16, 249, 317
BshFI	GGCC	4 cut(s)	38, 198, 266, 284
BsiSI	CCGG	3 cut(s)	195, 200, 207
BslI	CCNNNNNNNGG	2 cut(s)	206, 316
BsmAI	GTCTC	2 cut(s)	138, 593
BsmBI	CGTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	4 cut(s)	38, 198, 266, 284
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	4 cut(s)	392, 520, 556, 566
BspACI	CCGC	6 cut(s)	19, 54, 101, 247, 317, 618
BspANI	GGCC	4 cut(s)	38, 198, 266, 284
BspEI	TCCGGA	1 cut(s)	206
BspFNI	CGCG	3 cut(s)	16, 249, 317
BspLI	GGNNCC	4 cut(s)	245, 275, 285, 522
BspPI	GGATC	2 cut(s)	515, 528
BssMI	GATC	4 cut(s)	392, 520, 556, 566
BssNI	GRCGYC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	105, 251
BstF5I	GGATG	5 cut(s)	41, 62, 174, 203, 662
BstFNI	CGCG	3 cut(s)	16, 249, 317
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	4 cut(s)	395, 523, 559, 569
BstMAI	GTCTC	2 cut(s)	138, 593
BstMBI	GATC	4 cut(s)	392, 520, 556, 566
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 446
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	193, 198, 269
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	3 cut(s)	16, 249, 317
BstX2I	RGATCY	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	520
BsuI	GTATCC	1 cut(s)	646
BsuRI	GGCC	4 cut(s)	38, 198, 266, 284
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	5 cut(s)	41, 62, 174, 203, 662
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	105, 251
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	3 cut(s)	197, 230, 283
CseI	GACGC	1 cut(s)	486
CviAII	CATG	1 cut(s)	649
DpnI	GATC	4 cut(s)	394, 522, 558, 568
DpnII	GATC	4 cut(s)	392, 520, 556, 566
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	1 cut(s)	652
FaiI	YATR	5 cut(s)	354, 416, 563, 650, 659
FatI	CATG	1 cut(s)	648
Fnu4HI	GCNGC	3 cut(s)	19, 318, 618
FokI	GGATG	5 cut(s)	28, 49, 161, 190, 649
Fsp4HI	GCNGC	3 cut(s)	19, 318, 618
FspBI	CTAG	1 cut(s)	668
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	3 cut(s)	19, 318, 618
GsuI	CTGGAG	2 cut(s)	13, 253
HaeIII	GGCC	4 cut(s)	38, 198, 266, 284
HapII	CCGG	3 cut(s)	195, 200, 207
HgaI	GACGC	1 cut(s)	486
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	652
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	3 cut(s)	344, 542, 687
HpaII	CCGG	3 cut(s)	195, 200, 207
HphI	GGTGA	1 cut(s)	524
Hpy188I	TCNGA	3 cut(s)	191, 349, 381
Hpy188III	TCNNGA	2 cut(s)	207, 228
Hpy99I	CGWCG	4 cut(s)	152, 317, 502, 505
HpyAV	CCTTC	5 cut(s)	76, 189, 226, 256, 625
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	440, 471, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 446
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	652
HspAI	GCGC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	206
Kzo9I	GATC	4 cut(s)	392, 520, 556, 566
LmnI	GCTCC	2 cut(s)	129, 249
LweI	GCATC	2 cut(s)	212, 283
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	4 cut(s)	394, 522, 558, 568
MboI	GATC	4 cut(s)	392, 520, 556, 566
MboII	GAAGA	5 cut(s)	110, 178, 268, 271, 431
MflI	RGATCY	1 cut(s)	520
MluCI	AATT	5 cut(s)	90, 326, 530, 611, 674
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	214
MroI	TCCGGA	1 cut(s)	206
MseI	TTAA	3 cut(s)	551, 582, 709
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	3 cut(s)	195, 200, 207
MspR9I	CCNGG	3 cut(s)	195, 200, 271
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	3 cut(s)	16, 249, 317
MwoI	GCNNNNNNNGC	2 cut(s)	250, 446
NciI	CCSGG	2 cut(s)	195, 200
NdeII	GATC	4 cut(s)	392, 520, 556, 566
NlaIII	CATG	1 cut(s)	652
NlaIV	GGNNCC	4 cut(s)	245, 275, 285, 522
NmeAIII	GCCGAG	2 cut(s)	14, 565
PceI	AGGCCT	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	344, 687
PkrI	GCNGC	3 cut(s)	20, 319, 619
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
PsiI	TTATAA	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	4 cut(s)	245, 275, 285, 522
PspPI	GGNCC	3 cut(s)	197, 230, 283
PsuI	RGATCY	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	551, 582, 709
SatI	GCNGC	3 cut(s)	19, 318, 618
Sau3AI	GATC	4 cut(s)	392, 520, 556, 566
Sau96I	GGNCC	3 cut(s)	197, 230, 283
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	3 cut(s)	195, 200, 271
SetI	ASST	8 cut(s)	35, 126, 150, 275, 378, 468, 636, 709
SfaNI	GCATC	2 cut(s)	212, 283
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	5 cut(s)	90, 326, 530, 611, 674
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	6 cut(s)	19, 54, 101, 247, 317, 618
SspMI	CTAG	1 cut(s)	668
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	3 cut(s)	193, 198, 269
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	150
TasI	AATT	5 cut(s)	90, 326, 530, 611, 674
TauI	GCSGC	3 cut(s)	21, 320, 620
TfiI	GAWTC	2 cut(s)	344, 687
Tru1I	TTAA	3 cut(s)	551, 582, 709
Tru9I	TTAA	3 cut(s)	551, 582, 709
TscAI	CASTG	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XspI	CTAG	1 cut(s)	668
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.