Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013236

Physical Location & Seq

Genomic Coordinates Forward (+)

1373801 .. 1375079

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCAAAATCGCGTCCCACGTGACGAGGAAAGCAAAACGCCAAGTCGTATATCGCTGACTCACTCGCTCCACAACGCGTCGTTGCAAAAGAGAAGCAGGCACACAACTATGGCAATTGCTTCGCACCGCCTCATCTCCAGCTCCTACTCACCCACAGTAACCGCCATCTCATCCTTCCCTCCAAAATCAAAAACACTAATTTCAAATCCGAACGCTTCCCCCAATCTTCAACTCCCAAAACGCAGTCGTAGAGACGTCGCTTTGCTCTCCCTCGTCGCTCTCATCCCTTCGCTCTTCCGACCCGACGCGGCATCCGGATTCTCCTTCGGCATTTCAGGACCAAAGGATTGGCTCCGCGAGCAGAAGAAGAAGGCCTCCAGGTTCCTCCTGGCCCCGATTGATGCCTCCCGAGAGAGCCTCGTCGCGGCTCATCGACTACTCACGGCTACGGATTCGGATTATACGAACAAGGAGATGGAGGAGGTTCGGAGATTGTTTAGATCTGCCGCGAGGGATTGTGTTATAGAGGACAGGAACTCGTTTGTTGCATTTCAAGCCAATACAGGCGTTGAGGTTTGCACATTCCGTTTGGTTGTAAAGAACGCATCATCCTTGCTTGGTGATAAGGATCCTGTAAAATTGGAAGCTGAGTCTATCCTAAATGATCTTGTAAGCATTCACTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.39

Weight (kDa)

9.95

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42765
fragaria_vesca	FvH4_2g39780
malus_domestica	MD08G1031600.v1.1 MD15G1027300.v1.1
prunus_persica	Prupe.1G379100_v2.0.a1 Prupe.1G379100_v2.0.a1
pyrus_communis	pycom08g02490 pycom15g02330
rosa_chinensis	RchiOBHm_Chr6g0301081
rosa_multiflora	Rmu_sc0003168.1_g000013 Rmu_sc0035551.1_g000004
rosa_roxburghii	Rroxscaffold_172G00445580 Rroxscaffold_7G00167200
rosa_rugosa	Rorug06G0300600
rosa_samantha	Rh6AG414500 Rh6BG421400 Rh6CG429100 Rh6DG414400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccII	CGCG	6 cut(s)	12, 77, 308, 357, 425, 509
AccIII	TCCGGA	1 cut(s)	314
AciI	CCGC	6 cut(s)	127, 162, 308, 355, 425, 507
AclWI	GGATC	2 cut(s)	623, 636
AcvI	CACGTG	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	424
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	204, 230, 554
AjnI	CCWGG	2 cut(s)	377, 387
AloI	GAACNNNNNNTCC	2 cut(s)	593, 625
AluBI	AGCT	2 cut(s)	141, 647
AluI	AGCT	2 cut(s)	141, 647
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	623, 636
Ama87I	CYCGRG	1 cut(s)	408
Aor13HI	TCCGGA	1 cut(s)	314
AoxI	GGCC	2 cut(s)	372, 390
AspS9I	GGNCC	2 cut(s)	338, 391
AsuHPI	GGTGA	2 cut(s)	141, 632
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	628
BbrPI	CACGTG	1 cut(s)	20
BccI	CCATC	2 cut(s)	173, 469
BceAI	ACGGC	1 cut(s)	459
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BciT130I	CCWGG	2 cut(s)	379, 389
BcoDI	GTCTC	1 cut(s)	246
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	3 cut(s)	309, 426, 507
BlsI	GCNGC	3 cut(s)	310, 427, 508
Bme1390I	CCNGG	2 cut(s)	379, 389
Bme18I	GGWCC	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	338, 391
BmiI	GGNNCC	4 cut(s)	353, 383, 393, 630
BmrFI	CCNGG	2 cut(s)	379, 389
BmsI	GCATC	3 cut(s)	320, 391, 614
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
BpmI	CTGGAG	2 cut(s)	121, 361
BsaAI	YACGTR	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse8I	GATNNNNATC	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	379, 389
BseGI	GGATG	4 cut(s)	170, 282, 311, 608
BseJI	GATNNNNATC	1 cut(s)	627
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	639
BseRI	GAGGAG	1 cut(s)	494
Bsh1236I	CGCG	6 cut(s)	12, 77, 308, 357, 425, 509
BshFI	GGCC	2 cut(s)	374, 392
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	246
BsmBI	CGTCTC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	675
BsnI	GGCC	2 cut(s)	374, 392
BsoBI	CYCGRG	1 cut(s)	408
Bsp13I	TCCGGA	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	500, 628, 664
BspACI	CCGC	6 cut(s)	127, 162, 308, 355, 425, 507
BspANI	GGCC	2 cut(s)	374, 392
BspCNI	CTCAG	1 cut(s)	640
BspEI	TCCGGA	1 cut(s)	314
BspFNI	CGCG	6 cut(s)	12, 77, 308, 357, 425, 509
BspLI	GGNNCC	4 cut(s)	353, 383, 393, 630
BspPI	GGATC	2 cut(s)	623, 636
BspQI	GCTCTTC	1 cut(s)	299
BssMI	GATC	3 cut(s)	500, 628, 664
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	379, 389
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	98, 359
BstDEI	CTNAG	1 cut(s)	648
BstF5I	GGATG	4 cut(s)	170, 282, 311, 608
BstFNI	CGCG	6 cut(s)	12, 77, 308, 357, 425, 509
BstKTI	GATC	3 cut(s)	503, 631, 667
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	3 cut(s)	500, 628, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 554
BstNI	CCWGG	2 cut(s)	379, 389
BstSCI	CCNGG	2 cut(s)	377, 387
BstUI	CGCG	6 cut(s)	12, 77, 308, 357, 425, 509
BstX2I	RGATCY	2 cut(s)	500, 628
BstXI	CCANNNNNNTGG	1 cut(s)	348
BstYI	RGATCY	2 cut(s)	500, 628
BsuRI	GGCC	2 cut(s)	374, 392
BtsCI	GGATG	4 cut(s)	170, 282, 311, 608
Cac8I	GCNNGC	2 cut(s)	98, 359
Cfr13I	GGNCC	2 cut(s)	338, 391
CseI	GACGC	2 cut(s)	66, 314
CviJI	RGCY	9 cut(s)	141, 352, 374, 392, 417, 428, 446, 557, 647
CviKI_1	RGCY	9 cut(s)	141, 352, 374, 392, 417, 428, 446, 557, 647
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	3 cut(s)	502, 630, 666
DpnII	GATC	3 cut(s)	500, 628, 664
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	338
Eco72I	CACGTG	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	377, 387
Esp3I	CGTCTC	1 cut(s)	246
FaiI	YATR	4 cut(s)	50, 110, 462, 524
Fnu4HI	GCNGC	3 cut(s)	309, 426, 507
FokI	GGATG	4 cut(s)	157, 269, 298, 595
Fsp4HI	GCNGC	3 cut(s)	309, 426, 507
GluI	GCNGC	3 cut(s)	309, 426, 507
GsuI	CTGGAG	2 cut(s)	121, 361
HaeIII	GGCC	2 cut(s)	374, 392
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	2 cut(s)	66, 314
Hin1I	GRCGYC	1 cut(s)	255
HinfI	GANTC	4 cut(s)	58, 318, 452, 650
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	141, 632
Hpy188I	TCNGA	4 cut(s)	210, 299, 457, 489
Hpy188III	TCNNGA	3 cut(s)	315, 336, 408
Hpy99I	CGWCG	5 cut(s)	82, 260, 278, 308, 425
HpyAV	CCTTC	4 cut(s)	184, 297, 334, 364
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	2 cut(s)	19, 255
HpyCH4V	TGCA	4 cut(s)	4, 85, 548, 579
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 554
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	2 cut(s)	19, 255
Hsp92I	GRCGYC	1 cut(s)	255
Kpn2I	TCCGGA	1 cut(s)	314
Kzo9I	GATC	3 cut(s)	500, 628, 664
LguI	GCTCTTC	1 cut(s)	299
LmnI	GCTCC	3 cut(s)	72, 146, 357
LweI	GCATC	3 cut(s)	320, 391, 614
MaeII	ACGT	2 cut(s)	19, 255
MaeIII	GTNAC	2 cut(s)	20, 157
MalI	GATC	3 cut(s)	502, 630, 666
MboI	GATC	3 cut(s)	500, 628, 664
MboII	GAAGA	4 cut(s)	218, 286, 376, 379
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	2 cut(s)	500, 628
MluCI	AATT	3 cut(s)	114, 198, 638
MluI	ACGCGT	1 cut(s)	75
MlyI	GAGTC	2 cut(s)	52, 659
MmeI	TCCRAC	1 cut(s)	322
MroI	TCCGGA	1 cut(s)	314
MseI	TTAA	1 cut(s)	688
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	379, 389
MunI	CAATTG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	2 cut(s)	379, 389
MvnI	CGCG	6 cut(s)	12, 77, 308, 357, 425, 509
MwoI	GCNNNNNNNGC	2 cut(s)	358, 554
NdeII	GATC	3 cut(s)	500, 628, 664
NlaIV	GGNNCC	4 cut(s)	353, 383, 393, 630
NmuCI	GTSAC	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	2 cut(s)	16, 461
PctI	GAATGC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	318, 452
PkrI	GCNGC	3 cut(s)	310, 427, 508
PleI	GAGTC	2 cut(s)	52, 658
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
PpsI	GAGTC	2 cut(s)	52, 658
Ppu21I	YACGTR	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	377, 387
PspCI	CACGTG	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	377, 387
PspN4I	GGNNCC	4 cut(s)	353, 383, 393, 630
PspPI	GGNCC	2 cut(s)	338, 391
PsuI	RGATCY	2 cut(s)	500, 628
RseI	CAYNNNNRTG	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	688
SatI	GCNGC	3 cut(s)	309, 426, 507
Sau3AI	GATC	3 cut(s)	500, 628, 664
Sau96I	GGNCC	2 cut(s)	338, 391
SchI	GAGTC	2 cut(s)	52, 659
ScrFI	CCNGG	2 cut(s)	379, 389
SetI	ASST	7 cut(s)	22, 143, 258, 383, 486, 576, 649
SfaNI	GCATC	3 cut(s)	320, 391, 614
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	114, 198, 638
SseBI	AGGCCT	1 cut(s)	374
SsiI	CCGC	6 cut(s)	127, 162, 308, 355, 425, 507
StuI	AGGCCT	1 cut(s)	374
StyD4I	CCNGG	2 cut(s)	377, 387
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	2 cut(s)	22, 258
TaqI	TCGA	1 cut(s)	433
TasI	AATT	3 cut(s)	114, 198, 638
TauI	GCSGC	3 cut(s)	311, 428, 509
TfiI	GAWTC	2 cut(s)	318, 452
Tru1I	TTAA	1 cut(s)	688
Tru9I	TTAA	1 cut(s)	688
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspGWI	ACGGA	2 cut(s)	464, 575
VpaK11BI	GGWCC	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.