Rroxscaffold_172G00445580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000172
OG0013236
Physical Location & Seq
Forward (+)
88561 .. 90219
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_172G00445580.1

Sequence Viewer

Length: 678 bp
ATGGCTTCTGCTTGTTGCCGCCTTATCTCAACTACCTCCTCAGCCACTGTTACCGCCATTTCCTCCTTCCCTCCAAAACCAAACCCCCCAATTTCAAATCACCGCCGACTCCCAAACCTCAGTCGCAGAGACCTTGCTCTGCTCTCCTTCATCACTCTCGTCCCTCCCCTCTCTCGACCCGACCCGGCTTTCGGATTCGGCATTTCAGGACCAAAGGATTGGCTCCGAGAGCAAAAGAAGAAGGCCTCAAGGTTCCTCTTGGCCCCAATCGATGCCTCTAGAGAGAGCCTCCTCGCGGCTCATCGATTACTCATGGATGATACGAATCAGGAGATAGAGGAGGTTCAGAGACTGTTCAGATCTGCCGCCAGGGATTGCGTTGTGGAAGACCGGAGTTCATTCGTTGCGTTTCAAGCCAATACTGGTGTTGAGGTTTGCACATTCCGTCTGGTTGTAAAAAATGCTGCATCATTACTTGGTAATAAGGATCCTGTAAAATTGGAAGCGGAATCTATGCTCAACGATCTTATAAGATCATTCAGCTCTCTTAATGTATTGGTAAATGAGAGTGATGTTCAACTTGCCTCCCAAAGAAAGAAGGTAGCAGATTCACTCATGGATGCCATATCATCCCTTGACAAATTTGAGCAGGGAATCAAGGACTGCCTTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.76

Weight (kDa)

8.3

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 530
AccII CGCG 1 cut(s) 296
AciI CCGC 6 cut(s) 19, 54, 103, 296, 366, 506
AclWI GGATC 2 cut(s) 482, 495
AcsI RAATTY 1 cut(s) 641
AfiI CCNNNNNNNGG 2 cut(s) 191, 295
AgsI TTSAA 4 cut(s) 96, 413, 578, 671
AjnI CCWGG 1 cut(s) 368
AluBI AGCT 2 cut(s) 543, 674
AluI AGCT 2 cut(s) 543, 674
Alw26I GTCTC 2 cut(s) 123, 343
AlwI GGATC 2 cut(s) 482, 495
AlwNI CAGNNNCTG 2 cut(s) 47, 352
AoxI GGCC 2 cut(s) 243, 261
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspS9I GGNCC 2 cut(s) 209, 262
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 209
BamHI GGATCC 1 cut(s) 487
BbsI GAAGAC 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 370
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 123, 343
BfaI CTAG 1 cut(s) 279
BglII AGATCT 1 cut(s) 359
BisI GCNGC 4 cut(s) 19, 297, 366, 465
BlsI GCNGC 4 cut(s) 20, 298, 367, 466
Bme1390I CCNGG 2 cut(s) 185, 370
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 209, 262
BmiI GGNNCC 4 cut(s) 224, 254, 264, 489
BmrFI CCNGG 2 cut(s) 185, 370
BmsI GCATC 3 cut(s) 262, 476, 610
BpiI GAAGAC 1 cut(s) 393
BplI GAGNNNNNCTC 2 cut(s) 273, 305
Bpu10I CCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 185
Bsa29I ATCGAT 2 cut(s) 270, 304
BsaBI GATNNNNATC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 295
Bse1I ACTGG 1 cut(s) 427
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 370
BseCI ATCGAT 2 cut(s) 270, 304
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 3 cut(s) 322, 625, 629
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 191, 295
BseMII CTCAG 2 cut(s) 54, 133
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 3 cut(s) 28, 281, 353
BseXI GCAGC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 2 cut(s) 245, 263
BshVI ATCGAT 2 cut(s) 270, 304
BsiSI CCGG 2 cut(s) 185, 391
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 191, 295
BsmAI GTCTC 2 cut(s) 123, 343
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 2 cut(s) 245, 263
Bso31I GGTCTC 1 cut(s) 123
Bsp143I GATC 4 cut(s) 359, 487, 523, 533
BspACI CCGC 6 cut(s) 19, 54, 103, 296, 366, 506
BspANI GGCC 2 cut(s) 245, 263
BspCNI CTCAG 2 cut(s) 53, 132
BspDI ATCGAT 2 cut(s) 270, 304
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 4 cut(s) 224, 254, 264, 489
BspPI GGATC 2 cut(s) 482, 495
BspTNI GGTCTC 1 cut(s) 123
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 4 cut(s) 359, 487, 523, 533
Bst2UI CCWGG 1 cut(s) 370
Bst4CI ACNGT 2 cut(s) 49, 354
BstDEI CTNAG 2 cut(s) 40, 119
BstF5I GGATG 3 cut(s) 322, 625, 629
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 4 cut(s) 362, 490, 526, 536
BstMAI GTCTC 2 cut(s) 123, 343
BstMBI GATC 4 cut(s) 359, 487, 523, 533
BstMWI GCNNNNNNNGC 2 cut(s) 229, 413
BstNI CCWGG 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 183, 368
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 359, 487
BstXI CCANNNNNNTGG 1 cut(s) 219
BstYI RGATCY 2 cut(s) 359, 487
Bsu15I ATCGAT 2 cut(s) 270, 304
BsuRI GGCC 2 cut(s) 245, 263
BsuTUI ATCGAT 2 cut(s) 270, 304
BtsCI GGATG 3 cut(s) 322, 625, 629
BtsIMutI CAGTG 1 cut(s) 45
CaiI CAGNNNCTG 2 cut(s) 47, 352
Cfr13I GGNCC 2 cut(s) 209, 262
ClaI ATCGAT 2 cut(s) 270, 304
CviAII CATG 2 cut(s) 313, 616
DdeI CTNAG 2 cut(s) 40, 119
DpnI GATC 4 cut(s) 361, 489, 525, 535
DpnII GATC 4 cut(s) 359, 487, 523, 533
Eco147I AGGCCT 1 cut(s) 245
Eco31I GGTCTC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 368
FaeI CATG 2 cut(s) 316, 619
FaiI YATR 5 cut(s) 314, 515, 530, 617, 626
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 312, 615
Fnu4HI GCNGC 4 cut(s) 19, 297, 366, 465
FokI GGATG 3 cut(s) 329, 616, 632
Fsp4HI GCNGC 4 cut(s) 19, 297, 366, 465
FspBI CTAG 1 cut(s) 279
GluI GCNGC 4 cut(s) 19, 297, 366, 465
HaeIII GGCC 2 cut(s) 245, 263
HapII CCGG 2 cut(s) 185, 391
Hin1II CATG 2 cut(s) 316, 619
HindIII AAGCTT 1 cut(s) 672
HinfI GANTC 6 cut(s) 108, 195, 325, 509, 608, 654
HpaII CCGG 2 cut(s) 185, 391
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 4 cut(s) 194, 227, 348, 359
Hpy188III TCNNGA 4 cut(s) 174, 207, 279, 329
HpyAV CCTTC 4 cut(s) 76, 157, 235, 592
HpyCH4III ACNGT 2 cut(s) 49, 354
HpyCH4V TGCA 2 cut(s) 438, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 413
HpyF3I CTNAG 2 cut(s) 40, 119
Hsp92II CATG 2 cut(s) 316, 619
Kzo9I GATC 4 cut(s) 359, 487, 523, 533
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 3 cut(s) 262, 476, 610
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 49
MalI GATC 4 cut(s) 361, 489, 525, 535
MboI GATC 4 cut(s) 359, 487, 523, 533
MboII GAAGA 2 cut(s) 250, 398
MflI RGATCY 2 cut(s) 359, 487
MluCI AATT 3 cut(s) 90, 497, 641
MlyI GAGTC 1 cut(s) 102
MseI TTAA 1 cut(s) 549
MspI CCGG 2 cut(s) 185, 391
MspR9I CCNGG 2 cut(s) 185, 370
MvaI CCWGG 1 cut(s) 370
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 229, 413
NciI CCSGG 1 cut(s) 185
NdeII GATC 4 cut(s) 359, 487, 523, 533
NlaIII CATG 2 cut(s) 316, 619
NlaIV GGNNCC 4 cut(s) 224, 254, 264, 489
PceI AGGCCT 1 cut(s) 245
PfeI GAWTC 5 cut(s) 195, 325, 509, 608, 654
PkrI GCNGC 4 cut(s) 20, 298, 367, 466
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PsiI TTATAA 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 368
PspGI CCWGG 1 cut(s) 368
PspN4I GGNNCC 4 cut(s) 224, 254, 264, 489
PspPI GGNCC 2 cut(s) 209, 262
PstNI CAGNNNCTG 2 cut(s) 47, 352
PsuI RGATCY 2 cut(s) 359, 487
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 4 cut(s) 19, 297, 366, 465
Sau3AI GATC 4 cut(s) 359, 487, 523, 533
Sau96I GGNCC 2 cut(s) 209, 262
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 2 cut(s) 185, 370
SetI ASST 9 cut(s) 38, 120, 135, 254, 345, 435, 545, 603, 676
SfaNI GCATC 3 cut(s) 262, 476, 610
SinI GGWCC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 3 cut(s) 90, 497, 641
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 6 cut(s) 19, 54, 103, 296, 366, 506
SspMI CTAG 1 cut(s) 279
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 183, 368
TaaI ACNGT 2 cut(s) 49, 354
TaqI TCGA 3 cut(s) 175, 270, 304
TasI AATT 3 cut(s) 90, 497, 641
TauI GCSGC 3 cut(s) 21, 299, 368
TfiI GAWTC 5 cut(s) 195, 325, 509, 608, 654
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 139, 387
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 1 cut(s) 641
XbaI TCTAGA 1 cut(s) 278
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.