Rh6AG414500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013236
Physical Location & Seq
Reverse (-)
60972214 .. 60977648
5435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG414500.1

Sequence Viewer

Length: 549 bp
ATGGCTTCTGCTTGTTGCCGCCTTATCTCAACTACCTCCTCAGCCACTGTTACCGCCATTTCCTCCTTCCCTCCAAAACCAAACCCCCCAATTTCAAATCACTACTCCAATCACCGCCGACTCCCAAACCTCAGTCGCAGAGACCTTGCTCTGCTCTCCTTCATCACTCTCGTCCCTCCCCTCTCTCGACCCGACCCGGCTTTCGGATTCGGCATTTCAGGACCAAAGGATTGGCTCCGAGAGCAAAAGAAGAAGGCCTCAAGGTTCCTCTTGGCCCCAATCGATGCCTCTAGAGAGAGCCTCCTCGCGGCTCATCGATTACTCATGGATGATACGAATCAGGAGATAGAGGAGGTTCAGAGACTGTTCAGATCTGCCGCCAGGGATTGCGTTGTGGAAGACCGGAGTTCATTCGTTGCGTTTCAAGCCAATACTGGTGTTGAGGTTTGCACATTCCGTCTGGTTGTAAAAAATGCTGCATCCTTACTTGGTAATAAGGATCCTGTAAAATTGGAAGCGGAATCTATGCTCAACGATCTTATAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.15

Weight (kDa)

9.26

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AccII CGCG 1 cut(s) 308
AciI CCGC 6 cut(s) 19, 54, 115, 308, 378, 518
AclWI GGATC 2 cut(s) 494, 507
AfiI CCNNNNNNNGG 2 cut(s) 203, 307
AgsI TTSAA 2 cut(s) 96, 425
AjnI CCWGG 1 cut(s) 380
Alw26I GTCTC 2 cut(s) 135, 355
AlwI GGATC 2 cut(s) 494, 507
AlwNI CAGNNNCTG 2 cut(s) 47, 364
AoxI GGCC 2 cut(s) 255, 273
ApeKI GCWGC 1 cut(s) 476
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspS9I GGNCC 2 cut(s) 221, 274
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 221
BamHI GGATCC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 405
BbvCI CCTCAGC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 463
BciT130I CCWGG 1 cut(s) 382
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 135, 355
BfaI CTAG 1 cut(s) 291
BglII AGATCT 1 cut(s) 371
BisI GCNGC 4 cut(s) 19, 309, 378, 477
BlsI GCNGC 4 cut(s) 20, 310, 379, 478
Bme1390I CCNGG 2 cut(s) 197, 382
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 221, 274
BmiI GGNNCC 4 cut(s) 236, 266, 276, 501
BmrFI CCNGG 2 cut(s) 197, 382
BmsI GCATC 2 cut(s) 274, 488
BpiI GAAGAC 1 cut(s) 405
BplI GAGNNNNNCTC 2 cut(s) 285, 317
Bpu10I CCTNAGC 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 1 cut(s) 197
Bsa29I ATCGAT 2 cut(s) 282, 316
BsaBI GATNNNNATC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 1 cut(s) 402
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 307
Bse1I ACTGG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 382
BseCI ATCGAT 2 cut(s) 282, 316
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 334, 479
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 203, 307
BseMII CTCAG 2 cut(s) 54, 145
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 3 cut(s) 28, 293, 365
BseXI GCAGC 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 2 cut(s) 257, 275
BshVI ATCGAT 2 cut(s) 282, 316
BsiSI CCGG 2 cut(s) 197, 403
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 203, 307
BsmAI GTCTC 2 cut(s) 135, 355
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 2 cut(s) 257, 275
Bso31I GGTCTC 1 cut(s) 135
Bsp143I GATC 3 cut(s) 371, 499, 535
BspACI CCGC 6 cut(s) 19, 54, 115, 308, 378, 518
BspANI GGCC 2 cut(s) 257, 275
BspCNI CTCAG 2 cut(s) 53, 144
BspDI ATCGAT 2 cut(s) 282, 316
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 4 cut(s) 236, 266, 276, 501
BspPI GGATC 2 cut(s) 494, 507
BspTNI GGTCTC 1 cut(s) 135
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 3 cut(s) 371, 499, 535
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 49, 366
BstDEI CTNAG 2 cut(s) 40, 131
BstF5I GGATG 2 cut(s) 334, 479
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 3 cut(s) 374, 502, 538
BstMAI GTCTC 2 cut(s) 135, 355
BstMBI GATC 3 cut(s) 371, 499, 535
BstMWI GCNNNNNNNGC 2 cut(s) 241, 425
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 195, 380
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 2 cut(s) 371, 499
BstXI CCANNNNNNTGG 1 cut(s) 231
BstYI RGATCY 2 cut(s) 371, 499
Bsu15I ATCGAT 2 cut(s) 282, 316
BsuRI GGCC 2 cut(s) 257, 275
BsuTUI ATCGAT 2 cut(s) 282, 316
BtsCI GGATG 2 cut(s) 334, 479
BtsIMutI CAGTG 1 cut(s) 45
CaiI CAGNNNCTG 2 cut(s) 47, 364
Cfr13I GGNCC 2 cut(s) 221, 274
ClaI ATCGAT 2 cut(s) 282, 316
CviAII CATG 1 cut(s) 325
CviJI RGCY 9 cut(s) 5, 44, 200, 235, 257, 275, 300, 311, 428
CviKI_1 RGCY 9 cut(s) 5, 44, 200, 235, 257, 275, 300, 311, 428
DdeI CTNAG 2 cut(s) 40, 131
DpnI GATC 3 cut(s) 373, 501, 537
DpnII GATC 3 cut(s) 371, 499, 535
Eco147I AGGCCT 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 380
FaeI CATG 1 cut(s) 328
FaiI YATR 3 cut(s) 326, 527, 542
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 324
Fnu4HI GCNGC 4 cut(s) 19, 309, 378, 477
FokI GGATG 2 cut(s) 341, 466
Fsp4HI GCNGC 4 cut(s) 19, 309, 378, 477
FspBI CTAG 1 cut(s) 291
GluI GCNGC 4 cut(s) 19, 309, 378, 477
HaeIII GGCC 2 cut(s) 257, 275
HapII CCGG 2 cut(s) 197, 403
Hin1II CATG 1 cut(s) 328
HinfI GANTC 4 cut(s) 120, 207, 337, 521
HpaII CCGG 2 cut(s) 197, 403
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 206, 239, 360, 371
Hpy188III TCNNGA 4 cut(s) 186, 219, 291, 341
HpyAV CCTTC 3 cut(s) 76, 169, 247
HpyCH4III ACNGT 2 cut(s) 49, 366
HpyCH4V TGCA 2 cut(s) 450, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 241, 425
HpyF3I CTNAG 2 cut(s) 40, 131
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 3 cut(s) 371, 499, 535
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 9 cut(s) 204, 210, 326, 367, 394, 416, 420, 446, 516
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 2 cut(s) 274, 488
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 49
MalI GATC 3 cut(s) 373, 501, 537
MboI GATC 3 cut(s) 371, 499, 535
MboII GAAGA 2 cut(s) 262, 410
MflI RGATCY 2 cut(s) 371, 499
MluCI AATT 2 cut(s) 90, 509
MlyI GAGTC 1 cut(s) 114
MspI CCGG 2 cut(s) 197, 403
MspR9I CCNGG 2 cut(s) 197, 382
MvaI CCWGG 1 cut(s) 382
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 241, 425
NciI CCSGG 1 cut(s) 197
NdeII GATC 3 cut(s) 371, 499, 535
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 4 cut(s) 236, 266, 276, 501
PceI AGGCCT 1 cut(s) 257
PfeI GAWTC 3 cut(s) 207, 337, 521
PkrI GCNGC 4 cut(s) 20, 310, 379, 478
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
PsiI TTATAA 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 4 cut(s) 236, 266, 276, 501
PspPI GGNCC 2 cut(s) 221, 274
PstNI CAGNNNCTG 2 cut(s) 47, 364
PsuI RGATCY 2 cut(s) 371, 499
SatI GCNGC 4 cut(s) 19, 309, 378, 477
Sau3AI GATC 3 cut(s) 371, 499, 535
Sau96I GGNCC 2 cut(s) 221, 274
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 197, 382
SetI ASST 7 cut(s) 38, 132, 147, 266, 357, 447, 548
SfaNI GCATC 2 cut(s) 274, 488
SinI GGWCC 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 2 cut(s) 90, 509
SseBI AGGCCT 1 cut(s) 257
SsiI CCGC 6 cut(s) 19, 54, 115, 308, 378, 518
SspMI CTAG 1 cut(s) 291
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 195, 380
TaaI ACNGT 2 cut(s) 49, 366
TaqI TCGA 3 cut(s) 187, 282, 316
TasI AATT 2 cut(s) 90, 509
TauI GCSGC 3 cut(s) 21, 311, 380
TfiI GAWTC 3 cut(s) 207, 337, 521
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 151, 399
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 221
XbaI TCTAGA 1 cut(s) 290
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.