Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006157

Physical Location & Seq

Genomic Coordinates Reverse (-)

17216329 .. 17220672

Gene Structure 4344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGCAGGGGGAGAGGGCCAGTCTTGGCTATTTATCAGAGGCCTTGAACTTTGAGCATGGTTCTTCTTCAAGTAATGGTGTGATAGATCATTGGGAGAATATTCACAGTCTTGGTGATAATGACTTGCAGGATTACATGATTGCAAATTCTGAATCAAATACTTCGCTTGCAAACTCAGTTTATCACGAGCAACAGGGTTTACGCAGATTTAGCCTTGGTGAGGCTAGCTCTAGTGGCACGAAGGATGAAGCTTCCAGTCACAATGAGCAACGAATGGAAACAAGATGCTTTGACGGACGAGGAAATGAAATAATTGATTTAGACCCAGTGTTTGCGCAGCCATCAGGCACAAATCAACCTGTTCAGAATGTCAATCTGAATGCAGAGTATATAGAAATTCACGAGGATATTAATCCATATAGAGGTCGGTCTGGCTTCATAGAAGCTAATGGACCAGGGACCAGGGTCTCACAACCTGGCAGATCTTTTGAAGAGAACGGTGTTGGAACAGGTTCTTCTGTAGAGGGACGTCGTGCATCCTGCAAAAGAAAAGCTCTTGAAGGCAGTATTAGTCAATCTTCTTCAGGAGGTTATCATGATTTCCAGCGTGGAGAAAGCAGTTCGTGGACCCCAGGTTCTACGGTTTTTAGGCCAGGAAATGGTTTAAACATATCTGGCTCCCTTGACAATGGACCAAGAGGAATGGTCTCCGGTACTGTACCAAATTTTCCTGTTTCTGCACCAAATTTTCCTGTTTCTGCCATTGCAGAGAGCTCCAGTAGAAATATATGCGTCAGGAGTAATCCCTCAGATCATCAAGAAACTGTAAACCCATCTACCTTTGCTGCGGGAACTGTTGTCAGGCGGCCTGTCCCTCCATCCCAGTTGAACTTGTCAAGACACTTACCAGCAGATCAGCATTCATTGGACTTGAGACCTGGACAGTCTTTTGTCGTTTCTCGTAACCCAAATTCTACTCCTGTGAGCATACCACCTGGTTCAAGGACTATGCTACCACCATTTCGGTGGACTGGGAGCTCACTAGTGGGTGGAACATCGAACTCTACTGCGCCCGTTGAGAGAAATCTTCATCTAGATGAAACCAGGTCAAGAAGCATACCCGGGAATACTCTTGAGATTCCCATGTTTGCAGCTCCTGAGGTAGGAAATTTTGCCCGTAGTCAGAGTAGCAGAAATGTAACAAATGGAAACCTGAATAGTGCATCATCAGTGTCCAGGACAGGCTCAACAACAAGTGTTCCACCACCACCACCACCATCTTCTAATCTAGCGTGGACTTCTTACCAGAATTCACCACATTATCAAAGAAGAAGGACTGAAAGGTCTGAACTTGCACGTAGGTCCTTGCTTTCTTCCCTTGCAGCAGATGCTACAAACCAGAGATCTGGTGATCATCCAACACTTCGTTCGTTGGCCCCTCCTGCCTCTTCGGATGGGCTTGTGCTTCAGCCTGGTGGTGATAATAGTCAGATGCATAATCGGGCTTACTCGAGAGCAGGTCCGTTGTTTGATAGGCAAGGGGATAGTGTGGTTGGTATTCCTCATCCTTTGCGGGCCTTGGCAGCTGCAAGCAGAGGAAGAAGCAGACTTATGGTGTCCCAGATGCAGAATGTCTTGGATGTCATGCGTAGGGATGCTAATAATAACAACTTGCGGCTTGAGGACGTTATGCTTCTAAATCACTCAGTACTATTTGATGGGGCTACTGGTCATGACCGGTATAGAGACATGCGACTTGATGTGGACAACATGTCATATGAGGAATTGTTGGCACTAGAAGAGCGGATTGGAGATGTTTGTACCGGTGTAAACGAGGAAACCATATCAAACCGGTTAAAGCAACGAAAATACAAAAGCAACACAAAATCTCCACAAGATGCAGAGCCATGCTGTGTTTGTCAGGAGGAATACACCGAAGGAGAAGACATGGGGACACTAGAATGTGGGCATGAATTCCATAGCCAATGCATTAAAGAATGGCTGAAACAGAAGAATCTTTGCCCAATCTGCAAGACTACAGGCTTGAACACCGCGAAGAAGCGGAGGATAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

691

Amino Acids

75.28

Weight (kDa)

6.46

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	635 - 678	1.3e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	637 - 678	3.3e-12	Ring finger domain
zf-C3HC4_2	PF13923	637 - 677	1.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	637 - 664	1.7e-06	RING-like zinc finger
zf-C3HC4	PF00097	637 - 677	1.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	637 - 675	5.8e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45180 AT1G45180 AT1G45180 AT1G45180 AT5G42940 AT5G42940
fragaria_vesca	FvH4_2g34090 FvH4_2g34090
malus_domestica	MD08G1097400.v1.1 MD15G1079700.v1.1
prunus_persica	Prupe.1G432700_v2.0.a1
pyrus_communis	pycom08g07950 pycom15g07410 pycom15g07420
rosa_chinensis	RchiOBHm_Chr6g0308261
rosa_laevigata	RLG00000010653
rosa_multiflora	Rmu_ssc0000355.1_g000008
rosa_roxburghii	Rroxscaffold_7G00160310
rosa_rugosa	Rorug06G0365500 Rorug06G0365600 Rorug06G0365700 Rorug06G0365800
rosa_samantha	Rh6AG474500 Rh6BG485200 Rh6CG490200 Rh6DG476600
rosa_wichuraiana	Rw6G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1342
AatII	GACGTC	1 cut(s)	532
Acc16I	TGCGCA	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	1508
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	1804
AccII	CGCG	1 cut(s)	2054
AciI	CCGC	7 cut(s)	848, 865, 1573, 1675, 1804, 2052, 2062
AcsI	RAATTY	8 cut(s)	145, 396, 724, 745, 970, 1168, 1309, 1973
AcuI	CTGAAG	2 cut(s)	567, 1451
AcyI	GRCGYC	1 cut(s)	529
AfaI	GTAC	4 cut(s)	715, 720, 1710, 1822
AfiI	CCNNNNNNNGG	4 cut(s)	220, 422, 659, 1163
AflIII	ACRYGT	1 cut(s)	1770
AgeI	ACCGGT	3 cut(s)	1737, 1823, 1851
AgsI	TTSAA	7 cut(s)	46, 69, 491, 560, 889, 1002, 2047
AhdI	GACNNNNNGTC	1 cut(s)	1771
AhlI	ACTAGT	1 cut(s)	1042
AjuI	GAANNNNNNNTTGG	4 cut(s)	1411, 1443, 1791, 1823
AloI	GAACNNNNNNTCC	2 cut(s)	619, 651
AluBI	AGCT	8 cut(s)	228, 251, 446, 554, 774, 1038, 1154, 1586
AluI	AGCT	8 cut(s)	228, 251, 446, 554, 774, 1038, 1154, 1586
Alw21I	GWGCWC	2 cut(s)	776, 1040
Alw26I	GTCTC	4 cut(s)	472, 712, 928, 1740
AlwNI	CAGNNNCTG	1 cut(s)	1157
Ama87I	CYCGRG	2 cut(s)	1121, 1510
AoxI	GGCC	6 cut(s)	15, 39, 650, 866, 1434, 1575
ApeKI	GCWGC	6 cut(s)	337, 845, 1151, 1382, 1583, 1586
ApoI	RAATTY	8 cut(s)	145, 396, 724, 745, 970, 1168, 1309, 1973
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AseI	ATTAAT	1 cut(s)	411
AsiGI	ACCGGT	3 cut(s)	1737, 1823, 1851
Asp700I	GAANNNNTTC	1 cut(s)	511
AspLEI	GCGC	2 cut(s)	337, 1072
AspS9I	GGNCC	9 cut(s)	15, 452, 459, 627, 692, 1362, 1435, 1520, 1575
AsuC2I	CCSGG	2 cut(s)	1122, 1123
AsuHPI	GGTGA	5 cut(s)	125, 230, 1305, 1421, 1490
AsuNHI	GCTAGC	1 cut(s)	224
AvaI	CYCGRG	2 cut(s)	1121, 1510
AvaII	GGWCC	6 cut(s)	452, 459, 627, 692, 1362, 1520
AxyI	CCTNAGG	1 cut(s)	1158
BanII	GRGCYC	2 cut(s)	776, 1040
BauI	CACGAG	2 cut(s)	185, 401
BbsI	GAAGAC	1 cut(s)	1950
Bbv12I	GWGCWC	2 cut(s)	776, 1040
BbvI	GCAGC	6 cut(s)	349, 832, 1163, 1394, 1573, 1595
BccI	CCATC	6 cut(s)	349, 841, 886, 1285, 1448, 1712
BclI	TGATCA	1 cut(s)	1411
BcnI	CCSGG	2 cut(s)	1122, 1123
BcoDI	GTCTC	4 cut(s)	472, 712, 928, 1740
BcuI	ACTAGT	1 cut(s)	1042
BfaI	CTAG	7 cut(s)	225, 231, 1043, 1094, 1289, 1796, 1958
BfmI	CTRYAG	2 cut(s)	519, 2037
BfuAI	ACCTGC	1 cut(s)	1508
BglII	AGATCT	2 cut(s)	482, 1403
BisI	GCNGC	8 cut(s)	338, 846, 866, 1152, 1383, 1584, 1587, 1676
BlsI	GCNGC	8 cut(s)	339, 847, 867, 1153, 1384, 1585, 1588, 1677
BmcAI	AGTACT	1 cut(s)	1710
Bme18I	GGWCC	6 cut(s)	452, 459, 627, 692, 1362, 1520
BmeRI	GACNNNNNGTC	1 cut(s)	1771
BmeT110I	CYCGRG	2 cut(s)	1121, 1510
BmgT120I	GGNCC	9 cut(s)	15, 452, 459, 627, 692, 1362, 1435, 1520, 1575
BmiI	GGNNCC	4 cut(s)	460, 629, 679, 1437
BmrI	ACTGGG	3 cut(s)	320, 877, 1041
BmsI	GCATC	8 cut(s)	275, 545, 1232, 1378, 1482, 1614, 1645, 1888
BmtI	GCTAGC	1 cut(s)	228
BmuI	ACTGGG	3 cut(s)	320, 877, 1041
BoxI	GACNNNNGTC	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	1950
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	760
BpuEI	CTTGAG	3 cut(s)	952, 1154, 1700
BpuMI	CCSGG	2 cut(s)	1122, 1123
BsaAI	YACGTR	1 cut(s)	1358
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	529
BsaI	GGTCTC	3 cut(s)	472, 712, 928
BsaJI	CCNNGG	6 cut(s)	214, 455, 462, 631, 1121, 1578
BsaWI	WCCGGW	4 cut(s)	710, 1737, 1823, 1851
BsaXI	ACNNNNNCTCC	2 cut(s)	1873, 1903
Bsc4I	CCNNNNNNNGG	4 cut(s)	220, 422, 659, 1163
Bse118I	RCCGGY	3 cut(s)	1737, 1823, 1851
Bse1I	ACTGG	7 cut(s)	18, 255, 326, 777, 883, 1036, 1732
Bse21I	CCTNAGG	1 cut(s)	1158
Bse3DI	GCAATG	1 cut(s)	762
Bse8I	GATNNNNATC	1 cut(s)	411
BseDI	CCNNGG	6 cut(s)	214, 455, 462, 631, 1121, 1578
BseGI	GGATG	8 cut(s)	250, 536, 878, 1414, 1459, 1564, 1645, 1660
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	220, 422, 659, 1163
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	4 cut(s)	189, 822, 1149, 1719
BseNI	ACTGG	7 cut(s)	18, 255, 326, 777, 883, 1036, 1732
BseXI	GCAGC	6 cut(s)	349, 832, 1163, 1394, 1573, 1595
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	1 cut(s)	2054
BshFI	GGCC	6 cut(s)	17, 41, 652, 868, 1436, 1577
BshTI	ACCGGT	3 cut(s)	1737, 1823, 1851
BsiHKAI	GWGCWC	2 cut(s)	776, 1040
BsiHKCI	CYCGRG	2 cut(s)	1121, 1510
BsiSI	CCGG	5 cut(s)	711, 1122, 1738, 1824, 1852
BslFI	GGGAC	5 cut(s)	472, 540, 857, 1603, 1966
BslI	CCNNNNNNNGG	4 cut(s)	220, 422, 659, 1163
BsmAI	GTCTC	4 cut(s)	472, 712, 928, 1740
BsmFI	GGGAC	5 cut(s)	472, 540, 857, 1603, 1966
BsmI	GAATGC	2 cut(s)	385, 919
BsnI	GGCC	6 cut(s)	17, 41, 652, 868, 1436, 1577
Bso31I	GGTCTC	3 cut(s)	472, 712, 928
BsoBI	CYCGRG	2 cut(s)	1121, 1510
Bsp1286I	GDGCHC	2 cut(s)	776, 1040
Bsp143I	GATC	6 cut(s)	85, 482, 811, 913, 1403, 1411
BspACI	CCGC	7 cut(s)	848, 865, 1573, 1675, 1804, 2052, 2062
BspANI	GGCC	6 cut(s)	17, 41, 652, 868, 1436, 1577
BspCNI	CTCAG	4 cut(s)	188, 821, 1150, 1718
BspFNI	CGCG	1 cut(s)	2054
BspHI	TCATGA	2 cut(s)	595, 1732
BspLI	GGNNCC	4 cut(s)	460, 629, 679, 1437
BspMI	ACCTGC	1 cut(s)	1508
BspOI	GCTAGC	1 cut(s)	228
BspQI	GCTCTTC	1 cut(s)	1794
BspTNI	GGTCTC	3 cut(s)	472, 712, 928
BsrBI	CCGCTC	1 cut(s)	1804
BsrDI	GCAATG	1 cut(s)	762
BsrFI	RCCGGY	3 cut(s)	1737, 1823, 1851
BsrI	ACTGG	7 cut(s)	18, 255, 326, 777, 883, 1036, 1732
BssAI	RCCGGY	3 cut(s)	1737, 1823, 1851
BssECI	CCNNGG	6 cut(s)	214, 455, 462, 631, 1121, 1578
BssMI	GATC	6 cut(s)	85, 482, 811, 913, 1403, 1411
BssNI	GRCGYC	1 cut(s)	529
BssSI	CACGAG	2 cut(s)	185, 401
BssT1I	CCWWGG	2 cut(s)	214, 1578
Bst2BI	CACGAG	2 cut(s)	185, 401
Bst4CI	ACNGT	7 cut(s)	107, 500, 643, 718, 826, 856, 945
Bst6I	CTCTTC	3 cut(s)	486, 1453, 1794
BstACI	GRCGYC	1 cut(s)	529
BstAPI	GCANNNNNTGC	1 cut(s)	1388
BstBAI	YACGTR	1 cut(s)	1358
BstC8I	GCNNGC	4 cut(s)	168, 226, 1575, 1591
BstDEI	CTNAG	4 cut(s)	175, 808, 1158, 1705
BstENI	CCTNNNNNAGG	2 cut(s)	218, 1161
BstF5I	GGATG	8 cut(s)	250, 536, 878, 1414, 1459, 1564, 1645, 1660
BstFNI	CGCG	1 cut(s)	2054
BstHHI	GCGC	2 cut(s)	337, 1072
BstKTI	GATC	6 cut(s)	88, 485, 814, 916, 1406, 1414
BstMAI	GTCTC	4 cut(s)	472, 712, 928, 1740
BstMBI	GATC	6 cut(s)	85, 482, 811, 913, 1403, 1411
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 234, 1388, 1442, 1583, 2028
BstNSI	RCATGY	2 cut(s)	1753, 1774
BstPAI	GACNNNNGTC	1 cut(s)	464
BstSFI	CTRYAG	2 cut(s)	519, 2037
BstUI	CGCG	1 cut(s)	2054
BstV1I	GCAGC	6 cut(s)	349, 832, 1163, 1394, 1573, 1595
BstV2I	GAAGAC	1 cut(s)	1950
BstX2I	RGATCY	2 cut(s)	482, 1403
BstXI	CCANNNNNNTGG	2 cut(s)	1026, 1406
BstYI	RGATCY	2 cut(s)	482, 1403
Bsu36I	CCTNAGG	1 cut(s)	1158
BsuRI	GGCC	6 cut(s)	17, 41, 652, 868, 1436, 1577
BtsCI	GGATG	8 cut(s)	250, 536, 878, 1414, 1459, 1564, 1645, 1660
BtsIMutI	CAGTG	2 cut(s)	333, 1236
BveI	ACCTGC	1 cut(s)	1508
Cac8I	GCNNGC	4 cut(s)	168, 226, 1575, 1591
CaiI	CAGNNNCTG	1 cut(s)	1157
CciI	TCATGA	2 cut(s)	595, 1732
CfoI	GCGC	2 cut(s)	337, 1072
Cfr10I	RCCGGY	3 cut(s)	1737, 1823, 1851
Cfr13I	GGNCC	9 cut(s)	15, 452, 459, 627, 692, 1362, 1435, 1520, 1575
Cfr9I	CCCGGG	1 cut(s)	1121
CseI	GACGC	1 cut(s)	781
CsiI	ACCWGGT	2 cut(s)	994, 1103
Csp6I	GTAC	4 cut(s)	714, 719, 1709, 1821
CspAI	ACCGGT	3 cut(s)	1737, 1823, 1851
CviQI	GTAC	4 cut(s)	714, 719, 1709, 1821
DdeI	CTNAG	4 cut(s)	175, 808, 1158, 1705
DpnI	GATC	6 cut(s)	87, 484, 813, 915, 1405, 1413
DpnII	GATC	6 cut(s)	85, 482, 811, 913, 1403, 1411
DraI	TTTAAA	1 cut(s)	666
DrdI	GACNNNNNNGTC	1 cut(s)	1342
DriI	GACNNNNNGTC	1 cut(s)	1771
DseDI	GACNNNNNNGTC	1 cut(s)	1342
Eam1104I	CTCTTC	3 cut(s)	486, 1453, 1794
Eam1105I	GACNNNNNGTC	1 cut(s)	1771
EarI	CTCTTC	3 cut(s)	486, 1453, 1794
Ecl136II	GAGCTC	2 cut(s)	774, 1038
Eco130I	CCWWGG	2 cut(s)	214, 1578
Eco147I	AGGCCT	1 cut(s)	41
Eco24I	GRGCYC	2 cut(s)	776, 1040
Eco31I	GGTCTC	3 cut(s)	472, 712, 928
Eco47I	GGWCC	6 cut(s)	452, 459, 627, 692, 1362, 1520
Eco53kI	GAGCTC	2 cut(s)	774, 1038
Eco57I	CTGAAG	2 cut(s)	567, 1451
Eco81I	CCTNAGG	1 cut(s)	1158
Eco88I	CYCGRG	2 cut(s)	1121, 1510
EcoICRI	GAGCTC	2 cut(s)	774, 1038
EcoNI	CCTNNNNNAGG	2 cut(s)	218, 1161
EcoO109I	RGGNCCY	1 cut(s)	1362
EcoRI	GAATTC	2 cut(s)	1309, 1973
EcoT14I	CCWWGG	2 cut(s)	214, 1578
EcoT22I	ATGCAT	2 cut(s)	1497, 1991
EcoT38I	GRGCYC	2 cut(s)	776, 1040
ErhI	CCWWGG	2 cut(s)	214, 1578
FaqI	GGGAC	5 cut(s)	472, 540, 857, 1603, 1966
FauI	CCCGC	2 cut(s)	841, 1566
FauNDI	CATATG	1 cut(s)	1777
FbaI	TGATCA	1 cut(s)	1411
Fnu4HI	GCNGC	8 cut(s)	338, 846, 866, 1152, 1383, 1584, 1587, 1676
FokI	GGATG	8 cut(s)	257, 523, 865, 1401, 1466, 1551, 1652, 1667
FriOI	GRGCYC	2 cut(s)	776, 1040
Fsp4HI	GCNGC	8 cut(s)	338, 846, 866, 1152, 1383, 1584, 1587, 1676
FspBI	CTAG	7 cut(s)	225, 231, 1043, 1094, 1289, 1796, 1958
FspI	TGCGCA	1 cut(s)	336
GlaI	GCGC	2 cut(s)	336, 1071
GluI	GCNGC	8 cut(s)	338, 846, 866, 1152, 1383, 1584, 1587, 1676
GsuI	CTGGAG	1 cut(s)	760
HaeIII	GGCC	6 cut(s)	17, 41, 652, 868, 1436, 1577
HapII	CCGG	5 cut(s)	711, 1122, 1738, 1824, 1852
HgaI	GACGC	1 cut(s)	781
HhaI	GCGC	2 cut(s)	337, 1072
Hin1I	GRCGYC	1 cut(s)	529
Hin6I	GCGC	2 cut(s)	335, 1070
HinP1I	GCGC	2 cut(s)	335, 1070
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	3 cut(s)	152, 1138, 2014
HpaII	CCGG	5 cut(s)	711, 1122, 1738, 1824, 1852
HphI	GGTGA	5 cut(s)	125, 230, 1305, 1421, 1490
Hpy166II	GTNNAC	7 cut(s)	200, 627, 829, 1029, 1296, 1765, 1831
Hpy188I	TCNGA	9 cut(s)	37, 151, 366, 378, 811, 1185, 1348, 1453, 1491
Hpy8I	GTNNAC	7 cut(s)	200, 627, 829, 1029, 1296, 1765, 1831
Hpy99I	CGWCG	1 cut(s)	534
HpyAV	CCTTC	4 cut(s)	235, 554, 1326, 1931
HpyCH4III	ACNGT	7 cut(s)	107, 500, 643, 718, 826, 856, 945
HpyCH4IV	ACGT	3 cut(s)	529, 1357, 1686
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 234, 1388, 1442, 1583, 2028
HpyF3I	CTNAG	4 cut(s)	175, 808, 1158, 1705
HpySE526I	ACGT	3 cut(s)	529, 1357, 1686
Hsp92I	GRCGYC	1 cut(s)	529
HspAI	GCGC	2 cut(s)	335, 1070
Ksp22I	TGATCA	1 cut(s)	1411
Kzo9I	GATC	6 cut(s)	85, 482, 811, 913, 1403, 1411
LguI	GCTCTTC	1 cut(s)	1794
LmnI	GCTCC	4 cut(s)	683, 779, 1035, 1159
Lsp1109I	GCAGC	6 cut(s)	349, 832, 1163, 1394, 1573, 1595
LweI	GCATC	8 cut(s)	275, 545, 1232, 1378, 1482, 1614, 1645, 1888
MabI	ACCWGGT	2 cut(s)	994, 1103
MaeI	CTAG	7 cut(s)	225, 231, 1043, 1094, 1289, 1796, 1958
MaeII	ACGT	3 cut(s)	529, 1357, 1686
MaeIII	GTNAC	3 cut(s)	257, 962, 1198
MalI	GATC	6 cut(s)	87, 484, 813, 915, 1405, 1413
MbiI	CCGCTC	1 cut(s)	1804
MboI	GATC	6 cut(s)	85, 482, 811, 913, 1403, 1411
MflI	RGATCY	2 cut(s)	482, 1403
MhlI	GDGCHC	2 cut(s)	776, 1040
MmeI	TCCRAC	2 cut(s)	484, 1442
Mph1103I	ATGCAT	2 cut(s)	1497, 1991
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	4 cut(s)	411, 665, 1856, 1992
MslI	CAYNNNNRTG	3 cut(s)	1024, 1095, 1960
MspA1I	CMGCKG	1 cut(s)	1586
MspI	CCGG	5 cut(s)	711, 1122, 1738, 1824, 1852
MssI	GTTTAAAC	1 cut(s)	666
Mva1269I	GAATGC	2 cut(s)	385, 919
MvnI	CGCG	1 cut(s)	2054
MwoI	GCNNNNNNNGC	6 cut(s)	210, 234, 1388, 1442, 1583, 2028
NciI	CCSGG	2 cut(s)	1122, 1123
NdeI	CATATG	1 cut(s)	1777
NdeII	GATC	6 cut(s)	85, 482, 811, 913, 1403, 1411
NheI	GCTAGC	1 cut(s)	224
NlaIV	GGNNCC	4 cut(s)	460, 629, 679, 1437
NmuCI	GTSAC	1 cut(s)	257
NsbI	TGCGCA	1 cut(s)	336
NsiI	ATGCAT	2 cut(s)	1497, 1991
NspI	RCATGY	2 cut(s)	1753, 1774
PaeR7I	CTCGAG	1 cut(s)	1510
PagI	TCATGA	2 cut(s)	595, 1732
PceI	AGGCCT	1 cut(s)	41
PciI	ACATGT	1 cut(s)	1770
PciSI	GCTCTTC	1 cut(s)	1794
PctI	GAATGC	2 cut(s)	385, 919
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	152, 1138, 2014
PflMI	CCANNNNNTGG	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	1235
PinAI	ACCGGT	3 cut(s)	1737, 1823, 1851
PkrI	GCNGC	8 cut(s)	339, 847, 867, 1153, 1384, 1585, 1588, 1677
PmeI	GTTTAAAC	1 cut(s)	666
Ppu21I	YACGTR	1 cut(s)	1358
PpuMI	RGGWCCY	1 cut(s)	1362
PscI	ACATGT	1 cut(s)	1770
PshAI	GACNNNNGTC	1 cut(s)	464
PshBI	ATTAAT	1 cut(s)	411
Psp124BI	GAGCTC	2 cut(s)	776, 1040
Psp5II	RGGWCCY	1 cut(s)	1362
PspN4I	GGNNCC	4 cut(s)	460, 629, 679, 1437
PspPI	GGNCC	9 cut(s)	15, 452, 459, 627, 692, 1362, 1435, 1520, 1575
PspPPI	RGGWCCY	1 cut(s)	1362
PstNI	CAGNNNCTG	1 cut(s)	1157
PsuI	RGATCY	2 cut(s)	482, 1403
PvuII	CAGCTG	1 cut(s)	1586
RsaI	GTAC	4 cut(s)	715, 720, 1710, 1822
RsaNI	GTAC	4 cut(s)	714, 719, 1709, 1821
RseI	CAYNNNNRTG	3 cut(s)	1024, 1095, 1960
SacI	GAGCTC	2 cut(s)	776, 1040
SapI	GCTCTTC	1 cut(s)	1794
SaqAI	TTAA	4 cut(s)	411, 665, 1856, 1992
SatI	GCNGC	8 cut(s)	338, 846, 866, 1152, 1383, 1584, 1587, 1676
Sau3AI	GATC	6 cut(s)	85, 482, 811, 913, 1403, 1411
Sau96I	GGNCC	9 cut(s)	15, 452, 459, 627, 692, 1362, 1435, 1520, 1575
ScaI	AGTACT	1 cut(s)	1710
SduI	GDGCHC	2 cut(s)	776, 1040
SexAI	ACCWGGT	2 cut(s)	994, 1103
SfaNI	GCATC	8 cut(s)	275, 545, 1232, 1378, 1482, 1614, 1645, 1888
SfcI	CTRYAG	2 cut(s)	519, 2037
Sfr274I	CTCGAG	1 cut(s)	1510
SinI	GGWCC	6 cut(s)	452, 459, 627, 692, 1362, 1520
SlaI	CTCGAG	1 cut(s)	1510
SmaI	CCCGGG	1 cut(s)	1123
SmiMI	CAYNNNNRTG	3 cut(s)	1024, 1095, 1960
SmlI	CTYRAG	4 cut(s)	931, 1133, 1510, 1679
SmoI	CTYRAG	4 cut(s)	931, 1133, 1510, 1679
SpeI	ACTAGT	1 cut(s)	1042
SseBI	AGGCCT	1 cut(s)	41
SsiI	CCGC	7 cut(s)	848, 865, 1573, 1675, 1804, 2052, 2062
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	7 cut(s)	225, 231, 1043, 1094, 1289, 1796, 1958
SstI	GAGCTC	2 cut(s)	776, 1040
StuI	AGGCCT	1 cut(s)	41
StyI	CCWWGG	2 cut(s)	214, 1578
TaaI	ACNGT	7 cut(s)	107, 500, 643, 718, 826, 856, 945
TaiI	ACGT	3 cut(s)	532, 1360, 1689
TaqI	TCGA	2 cut(s)	1058, 1511
TaqII	GACCGA	1 cut(s)	417
TatI	WGTACW	1 cut(s)	1708
TauI	GCSGC	2 cut(s)	868, 1678
TfiI	GAWTC	3 cut(s)	152, 1138, 2014
Tru1I	TTAA	4 cut(s)	411, 665, 1856, 1992
Tru9I	TTAA	4 cut(s)	411, 665, 1856, 1992
TscAI	CASTG	2 cut(s)	333, 1236
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	6 cut(s)	337, 845, 1151, 1382, 1583, 1586
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	7 cut(s)	261, 321, 427, 912, 1079, 1113, 1986
TspGWI	ACGGA	2 cut(s)	309, 1512
TspMI	CCCGGG	1 cut(s)	1121
TspRI	CASTG	2 cut(s)	333, 1236
Van91I	CCANNNNNTGG	1 cut(s)	659
VpaK11BI	GGWCC	6 cut(s)	452, 459, 627, 692, 1362, 1520
VspI	ATTAAT	1 cut(s)	411
XagI	CCTNNNNNAGG	2 cut(s)	218, 1161
XapI	RAATTY	8 cut(s)	145, 396, 724, 745, 970, 1168, 1309, 1973
XbaI	TCTAGA	1 cut(s)	1093
XceI	RCATGY	2 cut(s)	1753, 1774
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1023
XhoI	CTCGAG	1 cut(s)	1510
XmaI	CCCGGG	1 cut(s)	1121
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	7 cut(s)	225, 231, 1043, 1094, 1289, 1796, 1958
ZraI	GACGTC	1 cut(s)	530
ZrmI	AGTACT	1 cut(s)	1710
Zsp2I	ATGCAT	2 cut(s)	1497, 1991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.