Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006157

Physical Location & Seq

Genomic Coordinates Reverse (-)

51295087 .. 51296526

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0365500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAAACCAATAACATCAATTTGATCTTATTGGTCTGTATAGTTGTTTGCATTAATCTAGGGGGTTGCTTAGGTGGTAGCCTGAGGAAAGGTTTCTACAAAAGAACATGTCCTCTAGCAGAGCAGATTGTCAAGAACGCCACGTGGAACCACGTCTCCGCCAATCCCAACTTGCCAGCAAAGTTGCTGAGGATGCATTTCCATGACTGTTTTGTAAGGGGATGCGAGGCCTCGGTTTTGTTGAGCTCTTCAGCAAATAACACTGCAGAGAGGGATTCGTTCCCAAACTCTTCTTTGGAGGGTTTTGATGTTATTGATGATATAAAAGAACAGTTGGAGAAGGCATGCCCAGGAGTTGTATCTTGTGCTGATATTCTTGCGTTGGCGACTAGGGATTCTATGTCATTCCAATTCAAGAAATCACTATGGGATGTTCTTACCGGTAGACGAGATGGCACTGTTTCAATAGCAAATGAGGTCTTACGTAACCTTCCAGCTCCTTTCTTCAACTTCACTCAACTCAAACAAAGTTTTGCAAATAGAGGTCTCACTGTGCAAGATCTTGTGGTACTGTCAGGTGGACACAGCATTGGTGTTGGGCATTGCAATTTATTCAGCAACCGGCTCTACAACTTCACCGGAAAAGGAGATCAAGACCCGTCTTTGGACTCCACATATGCTGCCTTGTTGAAGACCCAATGCCAAGGCCCTCGTGACACAACCACTGCTGTAGAACTAGACCCTGGAAGCTTTCAAAAGTTTGACAATCACTACTACACAAACCTTAAGCAGAATAAGGGTCTCTTCCAATCCGACGCTGCTCTTTTAACAAACAAAGTGTCAAACAATGCTGTTCAGAAATTGCTCAAGGCAAATGATTTCTTCACGGAGTTTGGTCAGTCTATGAAGAGGATGGGAGCAATTGGGGTCCTTACGGGCACATCTGGGCAGATTAGGAAGCAGTGTGGGGTTGTAAATTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

328

Amino Acids

35.86

Weight (kDa)

8.83

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 288	9.8e-83	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45180 AT1G45180 AT1G45180 AT1G45180 AT5G42940 AT5G42940
fragaria_vesca	FvH4_2g34090 FvH4_2g34090
malus_domestica	MD08G1097400.v1.1 MD15G1079700.v1.1
prunus_persica	Prupe.1G432700_v2.0.a1
pyrus_communis	pycom08g07950 pycom15g07410 pycom15g07420
rosa_chinensis	RchiOBHm_Chr6g0308261
rosa_laevigata	RLG00000010653
rosa_multiflora	Rmu_ssc0000355.1_g000008
rosa_roxburghii	Rroxscaffold_7G00160310
rosa_rugosa	Rorug06G0365500 Rorug06G0365600 Rorug06G0365700 Rorug06G0365800
rosa_samantha	Rh6AG474500 Rh6BG485200 Rh6CG490200 Rh6DG476600
rosa_wichuraiana	Rw6G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	445
AciI	CCGC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	976
AcuI	CTGAAG	1 cut(s)	234
AcvI	CACGTG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	1 cut(s)	664
AflII	CTTAAG	1 cut(s)	785
AflIII	ACRYGT	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	440
AgsI	TTSAA	6 cut(s)	415, 465, 508, 691, 755, 981
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	349, 742
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	3 cut(s)	246, 497, 750
AluI	AGCT	3 cut(s)	246, 497, 750
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	3 cut(s)	160, 551, 806
AoxI	GGCC	2 cut(s)	228, 706
ApeKI	GCWGC	2 cut(s)	680, 818
ApoI	RAATTY	1 cut(s)	976
ArsI	GACNNNNNNTTYG	2 cut(s)	824, 856
AseI	ATTAAT	1 cut(s)	54
AsiGI	ACCGGT	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	707, 928
AsuHPI	GGTGA	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	928
AxyI	CCTNAGG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	941
BanII	GRGCYC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	711
BbrPI	CACGTG	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	667, 805
BccI	CCATC	2 cut(s)	446, 907
BciT130I	CCWGG	2 cut(s)	351, 744
BcoDI	GTCTC	3 cut(s)	160, 551, 806
BfaI	CTAG	4 cut(s)	59, 116, 390, 737
BfmI	CTRYAG	2 cut(s)	264, 729
BfrI	CTTAAG	1 cut(s)	785
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	2 cut(s)	681, 819
BlsI	GCNGC	2 cut(s)	682, 820
Bme1390I	CCNGG	2 cut(s)	351, 744
Bme18I	GGWCC	1 cut(s)	928
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	707, 928
BmiI	GGNNCC	2 cut(s)	149, 929
BmrFI	CCNGG	2 cut(s)	351, 744
BmsI	GCATC	2 cut(s)	183, 212
BpiI	GAAGAC	1 cut(s)	698
Bpu10I	CCTNAGC	2 cut(s)	70, 188
BpuEI	CTTGAG	1 cut(s)	851
BsaAI	YACGTR	2 cut(s)	144, 485
BsaI	GGTCTC	2 cut(s)	551, 806
BsaJI	CCNNGG	4 cut(s)	231, 349, 703, 742
BsaWI	WCCGGW	2 cut(s)	440, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse118I	RCCGGY	2 cut(s)	440, 621
Bse21I	CCTNAGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	601
BseBI	CCWGG	2 cut(s)	351, 744
BseDI	CCNNGG	4 cut(s)	231, 349, 703, 742
BseGI	GGATG	4 cut(s)	198, 227, 436, 918
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	2 cut(s)	74, 179
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	2 cut(s)	667, 805
BshFI	GGCC	2 cut(s)	230, 708
BshTI	ACCGGT	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	3 cut(s)	441, 622, 639
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmAI	GTCTC	3 cut(s)	160, 551, 806
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	230, 708
Bso31I	GGTCTC	2 cut(s)	551, 806
Bsp1286I	GDGCHC	2 cut(s)	248, 941
Bsp143I	GATC	3 cut(s)	24, 559, 649
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	2 cut(s)	230, 708
BspCNI	CTCAG	2 cut(s)	75, 180
BspLI	GGNNCC	2 cut(s)	149, 929
BspMAI	CTGCAG	1 cut(s)	268
BspQI	GCTCTTC	1 cut(s)	253
BspTI	CTTAAG	1 cut(s)	785
BspTNI	GGTCTC	2 cut(s)	551, 806
BsrDI	GCAATG	1 cut(s)	601
BsrFI	RCCGGY	2 cut(s)	440, 621
BssAI	RCCGGY	2 cut(s)	440, 621
BssECI	CCNNGG	4 cut(s)	231, 349, 703, 742
BssMI	GATC	3 cut(s)	24, 559, 649
BssSI	CACGAG	1 cut(s)	711
BssT1I	CCWWGG	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	2 cut(s)	351, 744
Bst4CI	ACNGT	5 cut(s)	209, 333, 460, 553, 573
Bst6I	CTCTTC	4 cut(s)	253, 295, 809, 902
BstAFI	CTTAAG	1 cut(s)	785
BstBAI	YACGTR	2 cut(s)	144, 485
BstC8I	GCNNGC	2 cut(s)	177, 346
BstDEI	CTNAG	3 cut(s)	70, 83, 188
BstF5I	GGATG	4 cut(s)	198, 227, 436, 918
BstKTI	GATC	3 cut(s)	27, 562, 652
BstMAI	GTCTC	3 cut(s)	160, 551, 806
BstMBI	GATC	3 cut(s)	24, 559, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	2 cut(s)	351, 744
BstNSI	RCATGY	2 cut(s)	111, 348
BstSCI	CCNGG	2 cut(s)	349, 742
BstSFI	CTRYAG	2 cut(s)	264, 729
BstSLI	GKGCMC	1 cut(s)	941
BstSNI	TACGTA	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	667, 805
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
Bsu36I	CCTNAGG	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	230, 708
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	4 cut(s)	198, 227, 436, 918
BtsI	GCAGTG	3 cut(s)	261, 723, 968
BtsIMutI	CAGTG	5 cut(s)	261, 456, 549, 723, 968
Cac8I	GCNNGC	2 cut(s)	177, 346
Cfr10I	RCCGGY	2 cut(s)	440, 621
Cfr13I	GGNCC	2 cut(s)	707, 928
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	1 cut(s)	569
CspAI	ACCGGT	1 cut(s)	440
CviAII	CATG	3 cut(s)	108, 203, 345
CviJI	RGCY	7 cut(s)	81, 230, 246, 497, 625, 708, 750
CviKI_1	RGCY	7 cut(s)	81, 230, 246, 497, 625, 708, 750
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	3 cut(s)	70, 83, 188
DpnI	GATC	3 cut(s)	26, 561, 651
DpnII	GATC	3 cut(s)	24, 559, 649
Eam1104I	CTCTTC	4 cut(s)	253, 295, 809, 902
EarI	CTCTTC	4 cut(s)	253, 295, 809, 902
EciI	GGCGGA	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	246
Eco105I	TACGTA	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	703
Eco147I	AGGCCT	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	248
Eco31I	GGTCTC	2 cut(s)	551, 806
Eco47I	GGWCC	1 cut(s)	928
Eco53kI	GAGCTC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	234
Eco72I	CACGTG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	246
EcoO109I	RGGNCCY	2 cut(s)	707, 928
EcoRII	CCWGG	2 cut(s)	349, 742
EcoT14I	CCWWGG	1 cut(s)	703
EcoT22I	ATGCAT	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	703
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	3 cut(s)	111, 206, 348
FalI	AAGNNNNNCTT	2 cut(s)	788, 820
FatI	CATG	3 cut(s)	107, 202, 344
FauNDI	CATATG	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	681, 819
FokI	GGATG	4 cut(s)	205, 234, 443, 925
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	681, 819
FspBI	CTAG	4 cut(s)	59, 116, 390, 737
GluI	GCNGC	2 cut(s)	681, 819
HaeIII	GGCC	2 cut(s)	230, 708
HapII	CCGG	3 cut(s)	441, 622, 639
HgaI	GACGC	1 cut(s)	824
Hin1II	CATG	3 cut(s)	111, 206, 348
HindIII	AAGCTT	1 cut(s)	748
HinfI	GANTC	3 cut(s)	275, 395, 668
HpaII	CCGG	3 cut(s)	441, 622, 639
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	2 cut(s)	446, 581
Hpy188I	TCNGA	2 cut(s)	814, 858
Hpy188III	TCNNGA	4 cut(s)	133, 415, 653, 713
Hpy8I	GTNNAC	2 cut(s)	446, 581
Hpy99I	CGWCG	1 cut(s)	818
HpyAV	CCTTC	2 cut(s)	334, 500
HpyCH4III	ACNGT	5 cut(s)	209, 333, 460, 553, 573
HpyCH4IV	ACGT	3 cut(s)	143, 153, 484
HpyCH4V	TGCA	6 cut(s)	51, 196, 266, 536, 556, 606
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	3 cut(s)	70, 83, 188
HpySE526I	ACGT	3 cut(s)	143, 153, 484
Hsp92II	CATG	3 cut(s)	111, 206, 348
Kzo9I	GATC	3 cut(s)	24, 559, 649
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	502, 917
Lsp1109I	GCAGC	2 cut(s)	667, 805
LweI	GCATC	2 cut(s)	183, 212
MaeI	CTAG	4 cut(s)	59, 116, 390, 737
MaeII	ACGT	3 cut(s)	143, 153, 484
MaeIII	GTNAC	2 cut(s)	485, 713
MalI	GATC	3 cut(s)	26, 561, 651
MboI	GATC	3 cut(s)	24, 559, 649
MboII	GAAGA	7 cut(s)	240, 282, 496, 703, 796, 874, 919
MfeI	CAATTG	1 cut(s)	921
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	2 cut(s)	248, 941
MluCI	AATT	6 cut(s)	19, 410, 607, 860, 921, 976
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	2 cut(s)	315, 837
Mph1103I	ATGCAT	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	3 cut(s)	54, 786, 827
MslI	CAYNNNNRTG	1 cut(s)	201
MspCI	CTTAAG	1 cut(s)	785
MspI	CCGG	3 cut(s)	441, 622, 639
MspR9I	CCNGG	2 cut(s)	351, 744
MunI	CAATTG	1 cut(s)	921
MvaI	CCWGG	2 cut(s)	351, 744
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	3 cut(s)	24, 559, 649
NlaIII	CATG	3 cut(s)	111, 206, 348
NlaIV	GGNNCC	2 cut(s)	149, 929
NmuCI	GTSAC	1 cut(s)	713
NsiI	ATGCAT	1 cut(s)	198
NspI	RCATGY	2 cut(s)	111, 348
PaeI	GCATGC	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	230
PciI	ACATGT	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	275, 395
PinAI	ACCGGT	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	682, 820
PleI	GAGTC	1 cut(s)	662
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	662
Ppu21I	YACGTR	2 cut(s)	144, 485
PpuMI	RGGWCCY	1 cut(s)	928
PscI	ACATGT	1 cut(s)	107
PshBI	ATTAAT	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	928
Psp6I	CCWGG	2 cut(s)	349, 742
PspCI	CACGTG	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	349, 742
PspN4I	GGNNCC	2 cut(s)	149, 929
PspPI	GGNCC	2 cut(s)	707, 928
PspPPI	RGGWCCY	1 cut(s)	928
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	54, 786, 827
SatI	GCNGC	2 cut(s)	681, 819
Sau3AI	GATC	3 cut(s)	24, 559, 649
Sau96I	GGNCC	2 cut(s)	707, 928
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	2 cut(s)	351, 744
SduI	GDGCHC	2 cut(s)	248, 941
SfaNI	GCATC	2 cut(s)	183, 212
SfcI	CTRYAG	2 cut(s)	264, 729
SinI	GGWCC	1 cut(s)	928
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	785, 866
SmoI	CTYRAG	2 cut(s)	785, 866
SnaBI	TACGTA	1 cut(s)	485
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	6 cut(s)	19, 410, 607, 860, 921, 976
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	4 cut(s)	59, 116, 390, 737
SstI	GAGCTC	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	349, 742
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	5 cut(s)	209, 333, 460, 553, 573
TaiI	ACGT	3 cut(s)	146, 156, 487
TasI	AATT	6 cut(s)	19, 410, 607, 860, 921, 976
TfiI	GAWTC	2 cut(s)	275, 395
Tru1I	TTAA	3 cut(s)	54, 786, 827
Tru9I	TTAA	3 cut(s)	54, 786, 827
TscAI	CASTG	5 cut(s)	268, 463, 556, 730, 968
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	2 cut(s)	680, 818
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	2 cut(s)	17, 920
TspGWI	ACGGA	1 cut(s)	902
TspRI	CASTG	5 cut(s)	268, 463, 556, 730, 968
Vha464I	CTTAAG	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	928
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	1 cut(s)	976
XceI	RCATGY	2 cut(s)	111, 348
XmiI	GTMKAC	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	4 cut(s)	59, 116, 390, 737
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.