Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006157

Physical Location & Seq

Genomic Coordinates Reverse (-)

51300010 .. 51302452

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0365600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGAAGACAGAGCAGAGGATTCAGCTGGCTTCTGAGACCTCATTGAAACCATTAGTGCCTTCGTCGAAAACAACATCGAGGGACGACAAGAAGAAGAAGTACAAGGGTGTGAGGATGAGGAGCTGGGGCTCATGGGTTTCGGAGATTAGAGCCCCAAACCAGAAAACAAGAATATGGCTAGGCTCATACTCAACAGCGGAAGCAGCAGCCAGAGCCTATGATGCCGCTCTCTTGTGCCTCAAAGGCTCCTCAGCCAATCTCAACTTCCCAATCAGTGCCTCCTCACAGTTTGTTCCTCATGAAAATACTATCATGTCCCCTAAGTCCATTCAGAGAGTAGCTGCAGCTGCTGCTAATAGCTTCAATCATGAAAATGCCACCACCATCACAGCCTCATCTCCACCATCACCGCCTCCTAATGATCTCTCTTCTTCATCTTCATCACTGGTCTCATCCCCATCAATGTCATCATCCTCACCGTCGATTAATCTCGTTGACGATGACATGTCCTCGCTGATGGGCTCATTTGGGTCCTATACTCCTACTACTTATGATCATAATCCACAGGCGGACTATGATGTACCAATCTGCACCATGGAATCATGGAACAACTTTGATGATTTATTCACTGGTGCCTTGTTGGATCCACCTATGAATTATGACTTCTATGAAGAAAGCGATATTCGCTTGTGGAGCTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

235

Amino Acids

25.74

Weight (kDa)

5.38

Isoelectric Point (pI)

60.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	34 - 83	3e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45180 AT1G45180 AT1G45180 AT1G45180 AT5G42940 AT5G42940
fragaria_vesca	FvH4_2g34090 FvH4_2g34090
malus_domestica	MD08G1097400.v1.1 MD15G1079700.v1.1
prunus_persica	Prupe.1G432700_v2.0.a1
pyrus_communis	pycom08g07950 pycom15g07410 pycom15g07420
rosa_chinensis	RchiOBHm_Chr6g0308261
rosa_laevigata	RLG00000010653
rosa_multiflora	Rmu_ssc0000355.1_g000008
rosa_roxburghii	Rroxscaffold_7G00160310
rosa_rugosa	Rorug06G0365500 Rorug06G0365600 Rorug06G0365700 Rorug06G0365800
rosa_samantha	Rh6AG474500 Rh6BG485200 Rh6CG490200 Rh6DG476600
rosa_wichuraiana	Rw6G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AccBSI	CCGCTC	1 cut(s)	230
AciI	CCGC	4 cut(s)	200, 228, 413, 572
AclWI	GGATC	2 cut(s)	641, 654
AfaI	GTAC	2 cut(s)	104, 585
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	2 cut(s)	49, 367
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	6 cut(s)	28, 126, 344, 350, 363, 699
AluI	AGCT	6 cut(s)	28, 126, 344, 350, 363, 699
Alw26I	GTCTC	2 cut(s)	32, 457
AlwI	GGATC	2 cut(s)	641, 654
AlwNI	CAGNNNCTG	1 cut(s)	353
ApeKI	GCWGC	6 cut(s)	206, 209, 344, 347, 350, 353
AseI	ATTAAT	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	3 cut(s)	16, 402, 471
AvaII	GGWCC	1 cut(s)	534
BamHI	GGATCC	1 cut(s)	646
BanI	GGYRCC	1 cut(s)	635
BanII	GRGCYC	3 cut(s)	134, 157, 527
BarI	GAAGNNNNNNTAC	2 cut(s)	86, 118
BbsI	GAAGAC	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	253
BbvI	GCAGC	6 cut(s)	218, 221, 331, 337, 340, 359
BccI	CCATC	4 cut(s)	395, 415, 469, 514
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	32, 457
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	246
BisI	GCNGC	7 cut(s)	207, 210, 228, 345, 348, 351, 354
BlsI	GCNGC	7 cut(s)	208, 211, 229, 346, 349, 352, 355
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	4 cut(s)	250, 535, 637, 648
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	561
BsaI	GGTCTC	2 cut(s)	32, 457
BsaJI	CCNNGG	1 cut(s)	597
Bse1I	ACTGG	2 cut(s)	453, 637
Bse8I	GATNNNNATC	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	3 cut(s)	123, 455, 473
BseJI	GATNNNNATC	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	27, 267
BseNI	ACTGG	2 cut(s)	453, 637
BseRI	GAGGAG	3 cut(s)	136, 241, 274
BseXI	GCAGC	6 cut(s)	218, 221, 331, 337, 340, 359
BseYI	CCCAGC	1 cut(s)	126
BsgI	GTGCAG	1 cut(s)	577
BshNI	GGYRCC	1 cut(s)	635
BslFI	GGGAC	2 cut(s)	98, 304
BsmAI	GTCTC	2 cut(s)	32, 457
BsmFI	GGGAC	2 cut(s)	98, 304
Bso31I	GGTCTC	2 cut(s)	32, 457
Bsp1286I	GDGCHC	3 cut(s)	134, 157, 527
Bsp143I	GATC	3 cut(s)	424, 556, 646
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	4 cut(s)	200, 228, 413, 572
BspCNI	CTCAG	2 cut(s)	28, 266
BspHI	TCATGA	2 cut(s)	301, 370
BspLI	GGNNCC	4 cut(s)	250, 535, 637, 648
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	2 cut(s)	641, 654
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	2 cut(s)	32, 457
BsrBI	CCGCTC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	453, 637
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	3 cut(s)	424, 556, 646
BssT1I	CCWWGG	1 cut(s)	597
Bst4CI	ACNGT	2 cut(s)	291, 483
Bst6I	CTCTTC	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	3 cut(s)	36, 253, 324
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	123, 455, 473
BstKTI	GATC	3 cut(s)	427, 559, 649
BstMAI	GTCTC	2 cut(s)	32, 457
BstMBI	GATC	3 cut(s)	424, 556, 646
BstMWI	GCNNNNNNNGC	8 cut(s)	206, 215, 224, 246, 350, 353, 687, 696
BstNSI	RCATGY	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	6 cut(s)	218, 221, 331, 337, 340, 359
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	123, 455, 473
BtsIMutI	CAGTG	3 cut(s)	283, 446, 630
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	353
CciI	TCATGA	2 cut(s)	301, 370
Cfr13I	GGNCC	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	103, 584
CviAII	CATG	7 cut(s)	135, 302, 316, 371, 508, 598, 606
CviQI	GTAC	2 cut(s)	103, 584
DdeI	CTNAG	3 cut(s)	36, 253, 324
DpnI	GATC	3 cut(s)	426, 558, 648
DpnII	GATC	3 cut(s)	424, 556, 646
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	3 cut(s)	134, 157, 527
Eco31I	GGTCTC	2 cut(s)	32, 457
Eco47I	GGWCC	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	3 cut(s)	134, 157, 527
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	7 cut(s)	138, 305, 319, 374, 511, 601, 609
FaqI	GGGAC	2 cut(s)	98, 304
FatI	CATG	7 cut(s)	134, 301, 315, 370, 507, 597, 605
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	7 cut(s)	207, 210, 228, 345, 348, 351, 354
FokI	GGATG	3 cut(s)	130, 442, 460
FriOI	GRGCYC	3 cut(s)	134, 157, 527
Fsp4HI	GCNGC	7 cut(s)	207, 210, 228, 345, 348, 351, 354
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	7 cut(s)	207, 210, 228, 345, 348, 351, 354
GsaI	CCCAGC	1 cut(s)	130
Hin1II	CATG	7 cut(s)	138, 305, 319, 374, 511, 601, 609
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	2 cut(s)	22, 602
HphI	GGTGA	3 cut(s)	16, 402, 471
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	3 cut(s)	37, 145, 336
Hpy188III	TCNNGA	2 cut(s)	302, 371
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	2 cut(s)	70, 487
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	2 cut(s)	291, 483
HpyCH4V	TGCA	2 cut(s)	347, 594
HpyF10VI	GCNNNNNNNGC	8 cut(s)	206, 215, 224, 246, 350, 353, 687, 696
HpyF3I	CTNAG	3 cut(s)	36, 253, 324
Hsp92II	CATG	7 cut(s)	138, 305, 319, 374, 511, 601, 609
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	424, 556, 646
LmnI	GCTCC	3 cut(s)	123, 254, 696
LpnPI	CCDG	7 cut(s)	14, 112, 176, 226, 434, 554, 618
Lsp1109I	GCAGC	6 cut(s)	218, 221, 331, 337, 340, 359
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	182
MalI	GATC	3 cut(s)	426, 558, 648
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	3 cut(s)	424, 556, 646
MboII	GAAGA	7 cut(s)	19, 106, 109, 423, 426, 432, 686
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	3 cut(s)	134, 157, 527
MluCI	AATT	1 cut(s)	658
MmeI	TCCRAC	1 cut(s)	624
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	3 cut(s)	28, 200, 350
MwoI	GCNNNNNNNGC	8 cut(s)	206, 215, 224, 246, 350, 353, 687, 696
NcoI	CCATGG	1 cut(s)	597
NdeII	GATC	3 cut(s)	424, 556, 646
NlaIII	CATG	7 cut(s)	138, 305, 319, 374, 511, 601, 609
NlaIV	GGNNCC	4 cut(s)	250, 535, 637, 648
NspI	RCATGY	1 cut(s)	511
PagI	TCATGA	2 cut(s)	301, 370
PciI	ACATGT	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	22, 602
PkrI	GCNGC	7 cut(s)	208, 211, 229, 346, 349, 352, 355
PpuMI	RGGWCCY	1 cut(s)	534
PscI	ACATGT	1 cut(s)	507
PshBI	ATTAAT	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	534
PspFI	CCCAGC	1 cut(s)	126
PspN4I	GGNNCC	4 cut(s)	250, 535, 637, 648
PspPI	GGNCC	1 cut(s)	534
PspPPI	RGGWCCY	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	646
PvuII	CAGCTG	2 cut(s)	28, 350
RsaI	GTAC	2 cut(s)	104, 585
RsaNI	GTAC	2 cut(s)	103, 584
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	7 cut(s)	207, 210, 228, 345, 348, 351, 354
Sau3AI	GATC	3 cut(s)	424, 556, 646
Sau96I	GGNCC	1 cut(s)	534
SduI	GDGCHC	3 cut(s)	134, 157, 527
SetI	ASST	8 cut(s)	30, 44, 128, 346, 352, 365, 655, 701
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	1 cut(s)	658
SsiI	CCGC	4 cut(s)	200, 228, 413, 572
SspMI	CTAG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	2 cut(s)	291, 483
TaqI	TCGA	3 cut(s)	68, 80, 485
TasI	AATT	1 cut(s)	658
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	22, 602
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	3 cut(s)	283, 453, 637
TseI	GCWGC	6 cut(s)	206, 209, 344, 347, 350, 353
TspDTI	ATGAA	6 cut(s)	318, 387, 426, 432, 671, 687
TspRI	CASTG	3 cut(s)	283, 453, 637
VpaK11BI	GGWCC	1 cut(s)	534
VspI	ATTAAT	1 cut(s)	489
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.