Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014022

Physical Location & Seq

Genomic Coordinates Forward (+)

17451488 .. 17453124

Gene Structure 1637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGATCTATCAAACCGTCGCAATCCTCTCCGGGATCTGAGCTTTCCTCCTCCTCCGCCGCCACCTATTTTCCACCGTGCGAGCTCTACGGGGACGAGTTTTCCGATCTTAGCCGTCGCGGTGATCGGAATCTTAGCCACAGCATTTTTACTTGTAAGCTATTATGTTTTTGTTATCAAATGTTGTCTCAACTGGCACCGAATCGACATTCTTGGTCGATTCTCGTTATCTCGAAGGCGACGCAACGACCAAGATCCTTTAATGGTTTACTCTCCAGAGCTTAGAAGCCGCGGTCTTGATGAATCCGTCATTAGAGCAATCCCAATCTTTAAGTTCAAGAAGAGATACGACCAAAACGACGGCGTTTTTACAGGAGAAGGAGAAGAAGAAGAAGAGAAGAGATCTCAAGAATGCTCTGTTTGTTTGAGTGAGTTTCAAGATGAGGAGAAGCTGAGGATTATCCCAAATTGTTCTCATTTGTTTCATATCGACTGTATCGATGTGTGGCTTCAGAACAACGCCAATTGTCCTTTGTGTAGAACTAGGGTTTCTTGTGACACAAGTTTTCCTCCGGATCGGGTTTCTGCGCCGAGCACTTCTCCCGAGAATCTGGTCATGTTAAGAGGTGAGAACGAGTATGTGGTCATTGAGCTGGGCAGTAGCATCGGTAGTGACAGAGATAGTCCAAGACACGGAAGGTTACTTACGGGACAAGAAAGGTCAAATTCAGGTTATCTACTGAACGAAAACACCCAAAATTCGATCAGTCCATCTCCGAAGAAGCTTGACCGCGGAGGGCTTCCAAGAAAATTCCGAAAGCTTCACAAGATGACGAGTATGGGAGACGAATGCATCGACATAAGAAGAGGTAAAGACGAACAGTTCGGTAGTATTCAGCCCATTAGAAGATCAATCTCAATGGATTCATCGGCGGATAGACAGCTTTACTTGGCGGTTCAAGAGGCGATTCGGAAAAACCGCGAAGTTCTGGTGGTTGGAGACGGAGGAGGATGTAGCAGTAGTAGTGGCAATGTTAGTAATTCCAAAGTGAAGAGATCTTTCTTCTCTTTTGGGAGCAGTAGACGTTCTAGAAGTTCCTCTAAATTGCCACTTTATTTTGAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

375

Amino Acids

42.32

Weight (kDa)

9.03

Isoelectric Point (pI)

71.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	136 - 180	1.4e-13	Ring finger domain
zf-rbx1	PF12678	136 - 180	2.7e-09	RING-H2 zinc finger domain
zf-RING_11	PF17123	137 - 166	2.2e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	137 - 179	4.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	137 - 181	5.5e-06	zinc-RING finger domain
zf-C3HC4	PF00097	138 - 179	2.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43420
fragaria_vesca	FvH4_4g03440
malus_domestica	MD13G1212600.v1.1 MD16G1216300.v1.1
prunus_persica	Prupe.1G037600_v2.0.a1
pyrus_communis	pycom13g18440 pycom16g18090
rosa_chinensis	RchiOBHm_Chr4g0392431
rosa_laevigata	RLG00000009807
rosa_multiflora	Rmu_sc0001800.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337650
rosa_rugosa	Rorug03G0338800
rosa_samantha	Rh4AG042800 Rh4BG037800 Rh4CG045800 Rh4DG039900
rosa_wichuraiana	Rw4G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	1081
AccII	CGCG	4 cut(s)	119, 291, 792, 981
AccIII	TCCGGA	1 cut(s)	571
AclWI	GGATC	4 cut(s)	12, 42, 248, 582
AcsI	RAATTY	3 cut(s)	724, 757, 809
AcuI	CTGAAG	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	692
AgsI	TTSAA	4 cut(s)	337, 437, 959, 1121
AluBI	AGCT	9 cut(s)	42, 84, 159, 280, 451, 652, 784, 820, 943
AluI	AGCT	9 cut(s)	42, 84, 159, 280, 451, 652, 784, 820, 943
Alw21I	GWGCWC	2 cut(s)	86, 596
Alw26I	GTCTC	3 cut(s)	191, 837, 993
AlwI	GGATC	4 cut(s)	12, 42, 248, 582
Ama87I	CYCGRG	1 cut(s)	602
Aor13HI	TCCGGA	1 cut(s)	571
ApoI	RAATTY	3 cut(s)	724, 757, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
AspLEI	GCGC	1 cut(s)	589
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	133, 638
AvaI	CYCGRG	1 cut(s)	602
BanI	GGYRCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	86
BarI	GAAGNNNNNNTAC	2 cut(s)	688, 720
Bbv12I	GWGCWC	2 cut(s)	86, 596
BbvCI	CCTCAGC	1 cut(s)	452
BccI	CCATC	1 cut(s)	778
BceAI	ACGGC	2 cut(s)	98, 376
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	3 cut(s)	191, 837, 993
BfaI	CTAG	2 cut(s)	543, 1089
BglII	AGATCT	2 cut(s)	401, 1055
BisI	GCNGC	2 cut(s)	59, 289
BlsI	GCNGC	2 cut(s)	60, 290
Bme1390I	CCNGG	1 cut(s)	32
BmeT110I	CYCGRG	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	672, 861
BplI	GAGNNNNNCTC	4 cut(s)	31, 63, 583, 615
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	32
Bsa29I	ATCGAT	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	289, 790
BsaWI	WCCGGW	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	1036
Bse8I	GATNNNNATC	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	571
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	289, 790
BseGI	GGATG	1 cut(s)	1016
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMI	GCAATG	1 cut(s)	1036
BseMII	CTCAG	2 cut(s)	29, 443
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	4 cut(s)	39, 42, 458, 1020
BseYI	CCCAGC	1 cut(s)	652
Bsh1236I	CGCG	4 cut(s)	119, 291, 792, 981
BshNI	GGYRCC	1 cut(s)	195
BshVI	ATCGAT	1 cut(s)	498
BsiHKAI	GWGCWC	2 cut(s)	86, 596
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	31, 572
BslFI	GGGAC	2 cut(s)	106, 723
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	3 cut(s)	191, 837, 993
BsmBI	CGTCTC	2 cut(s)	837, 993
BsmFI	GGGAC	2 cut(s)	106, 723
BsmI	GAATGC	2 cut(s)	416, 854
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	86, 596
Bsp13I	TCCGGA	1 cut(s)	571
BspCNI	CTCAG	2 cut(s)	30, 444
BspDI	ATCGAT	1 cut(s)	498
BspEI	TCCGGA	1 cut(s)	571
BspFNI	CGCG	4 cut(s)	119, 291, 792, 981
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	4 cut(s)	12, 42, 248, 582
BspT107I	GGYRCC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	1036
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	289, 790
Bst4CI	ACNGT	4 cut(s)	17, 77, 494, 882
Bst6I	CTCTTC	5 cut(s)	335, 387, 392, 859, 1046
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	5 cut(s)	38, 109, 133, 281, 452
BstDSI	CCRYGG	2 cut(s)	289, 790
BstF5I	GGATG	1 cut(s)	1016
BstFNI	CGCG	4 cut(s)	119, 291, 792, 981
BstHHI	GCGC	1 cut(s)	589
BstMAI	GTCTC	3 cut(s)	191, 837, 993
BstSCI	CCNGG	1 cut(s)	30
BstUI	CGCG	4 cut(s)	119, 291, 792, 981
BstX2I	RGATCY	5 cut(s)	4, 34, 253, 401, 1055
BstYI	RGATCY	5 cut(s)	4, 34, 253, 401, 1055
Bsu15I	ATCGAT	1 cut(s)	498
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	2 cut(s)	289, 790
BtsCI	GGATG	1 cut(s)	1016
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	589
Cfr42I	CCGCGG	2 cut(s)	292, 793
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	1 cut(s)	249
CviAII	CATG	1 cut(s)	616
DdeI	CTNAG	5 cut(s)	38, 109, 133, 281, 452
Eam1104I	CTCTTC	5 cut(s)	335, 387, 392, 859, 1046
EarI	CTCTTC	5 cut(s)	335, 387, 392, 859, 1046
EciI	GGCGGA	2 cut(s)	45, 947
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	602
EcoICRI	GAGCTC	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	854
EcoT38I	GRGCYC	1 cut(s)	86
Esp3I	CGTCTC	2 cut(s)	837, 993
FaeI	CATG	1 cut(s)	619
FaiI	YATR	6 cut(s)	165, 486, 617, 639, 839, 860
FaqI	GGGAC	2 cut(s)	106, 723
FatI	CATG	1 cut(s)	615
FblI	GTMKAC	1 cut(s)	1081
Fnu4HI	GCNGC	2 cut(s)	59, 289
FokI	GGATG	1 cut(s)	1023
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	59, 289
FspBI	CTAG	2 cut(s)	543, 1089
GlaI	GCGC	1 cut(s)	588
GluI	GCNGC	2 cut(s)	59, 289
GsaI	CCCAGC	1 cut(s)	656
GsuI	CTGGAG	1 cut(s)	258
HapII	CCGG	2 cut(s)	31, 572
HgaI	GACGC	1 cut(s)	249
HhaI	GCGC	1 cut(s)	589
Hin1II	CATG	1 cut(s)	619
Hin6I	GCGC	1 cut(s)	587
HinP1I	GCGC	1 cut(s)	587
HindIII	AAGCTT	2 cut(s)	782, 818
HinfI	GANTC	7 cut(s)	129, 201, 219, 302, 607, 923, 967
HpaII	CCGG	2 cut(s)	31, 572
HphI	GGTGA	2 cut(s)	133, 638
Hpy166II	GTNNAC	2 cut(s)	268, 1082
Hpy188I	TCNGA	7 cut(s)	39, 105, 128, 513, 777, 815, 972
Hpy8I	GTNNAC	2 cut(s)	268, 1082
Hpy99I	CGWCG	4 cut(s)	21, 119, 243, 362
HpyAV	CCTTC	3 cut(s)	228, 371, 690
HpyCH4III	ACNGT	4 cut(s)	17, 77, 494, 882
HpyCH4IV	ACGT	1 cut(s)	1084
HpyCH4V	TGCA	1 cut(s)	852
HpyF3I	CTNAG	5 cut(s)	38, 109, 133, 281, 452
HpySE526I	ACGT	1 cut(s)	1084
Hsp92II	CATG	1 cut(s)	619
HspAI	GCGC	1 cut(s)	587
Kpn2I	TCCGGA	1 cut(s)	571
KspI	CCGCGG	2 cut(s)	292, 793
LmnI	GCTCC	1 cut(s)	1074
LpnPI	CCDG	9 cut(s)	44, 178, 288, 357, 585, 596, 638, 714, 974
LweI	GCATC	2 cut(s)	672, 861
MaeI	CTAG	2 cut(s)	543, 1089
MaeII	ACGT	1 cut(s)	1084
MaeIII	GTNAC	3 cut(s)	554, 671, 699
MfeI	CAATTG	1 cut(s)	523
MflI	RGATCY	5 cut(s)	4, 34, 253, 401, 1055
MhlI	GDGCHC	2 cut(s)	86, 596
MluCI	AATT	7 cut(s)	466, 523, 724, 757, 809, 1039, 1103
MmeI	TCCRAC	1 cut(s)	976
Mph1103I	ATGCAT	1 cut(s)	854
MroI	TCCGGA	1 cut(s)	571
MseI	TTAA	3 cut(s)	260, 330, 620
MspA1I	CMGCKG	2 cut(s)	291, 792
MspI	CCGG	2 cut(s)	31, 572
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	523
Mva1269I	GAATGC	2 cut(s)	416, 854
MvnI	CGCG	4 cut(s)	119, 291, 792, 981
NciI	CCSGG	1 cut(s)	32
NlaIII	CATG	1 cut(s)	619
NlaIV	GGNNCC	1 cut(s)	197
NmeAIII	GCCGAG	1 cut(s)	615
NmuCI	GTSAC	2 cut(s)	554, 671
NsiI	ATGCAT	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	4 cut(s)	101, 354, 495, 852
PctI	GAATGC	2 cut(s)	416, 854
PfeI	GAWTC	7 cut(s)	129, 201, 219, 302, 607, 923, 967
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	60, 290
Psp124BI	GAGCTC	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	652
PspN4I	GGNNCC	1 cut(s)	197
PsuI	RGATCY	5 cut(s)	4, 34, 253, 401, 1055
SacI	GAGCTC	1 cut(s)	86
SacII	CCGCGG	2 cut(s)	292, 793
SaqAI	TTAA	3 cut(s)	260, 330, 620
SatI	GCNGC	2 cut(s)	59, 289
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	86, 596
SfaNI	GCATC	2 cut(s)	672, 861
Sfr303I	CCGCGG	2 cut(s)	292, 793
SgrBI	CCGCGG	2 cut(s)	292, 793
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	7 cut(s)	466, 523, 724, 757, 809, 1039, 1103
SspMI	CTAG	2 cut(s)	543, 1089
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	4 cut(s)	17, 77, 494, 882
TaiI	ACGT	1 cut(s)	1087
TaqI	TCGA	7 cut(s)	204, 217, 232, 489, 498, 761, 855
TasI	AATT	7 cut(s)	466, 523, 724, 757, 809, 1039, 1103
TauI	GCSGC	2 cut(s)	61, 291
TfiI	GAWTC	7 cut(s)	129, 201, 219, 302, 607, 923, 967
Tru1I	TTAA	3 cut(s)	260, 330, 620
Tru9I	TTAA	3 cut(s)	260, 330, 620
TseFI	GTSAC	2 cut(s)	554, 671
Tsp45I	GTSAC	2 cut(s)	554, 671
TspDTI	ATGAA	3 cut(s)	315, 473, 915
TspGWI	ACGGA	3 cut(s)	295, 708, 1017
XapI	RAATTY	3 cut(s)	724, 757, 809
XbaI	TCTAGA	1 cut(s)	1088
XmiI	GTMKAC	1 cut(s)	1081
XspI	CTAG	2 cut(s)	543, 1089
Zsp2I	ATGCAT	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.