Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0014022

Physical Location & Seq

Genomic Coordinates Reverse (-)

14507547 .. 14508623

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGATCTTGGAAGCAAAAGCTATTTGATCCATGTGTCACAAGCTCTTCCTCCATCAACAACTCCAGGAAGCTCCATTTTTGGAACTCCGATTCACCATTCCGACACAAGCTTCCCCATTATAGCAGTTGCCGGAATAGGAATTGTAGCCACAGCTTTCTTGCTCGTCAGCTACTACATCTTTGTTATCAAATGCTGCCTCAACTGGCACCGTGTCGACATCCTCAGGCGATTCTCATTGTCGCGCAATAGGCGGGACGAAGACCAGCTCATGGTCTACTCCCCCCGTGTAGAGACCCGGGGGCTCGACGAAGCAGTGATCAGATCAATCCCATTGTTGCAATTCAAGAAAGATGGAAATTACATAGGATTGGGAGAGGGAAGCTTTTGCGAGTGTGCGGTTTGCTTGAATGAGTTTCAAGAAGACGAGAAGCTTCGAATCATACCGAATTGCAGCCATGTTTTCCACATTGATTGTATTGATGTTTGGCTTCAAAGCAATGCCAATTGCCCACTTTGTAGAACAAGCATTTCAACCACACCCAGATTTCCTTTTGATCGAACTGTCGCTCCAAGCTCTTCGCCCCAAGATCCAAGTCCTTACGCAGGTAGCCTCAGTGGAGGCGATGAAGACTACGTGGTTATTGAATTGAGCAACGACAACACGATGGATCAAGCAATGCTTGGAAGACAAGGAAGATCGAATTCCGGGGAGTTATCACTATCAGTAAGATCTATTAGTCCTTCACCTAGGAAATTGGAACACAGAGTTTTGCCCAAGAAATTTGAGAGAAAATTTCACAACATGATTACAAGCATGGGGGATGAATGCATTGATATCAGAGGGAAAGATGATCAGTTTTCAATCCAACCAATAAGGAGGTCTTTCTCAATGGACTCATCAGCTGATAGGCAGCTTTATTTGGCAGTTCAAGCAGCAATGCAGCAGCAAAGGCAAATCAGTGAGGTCAGTCCCACTGAAGGTTGCAGTAATGGTAGGGTTAGAAGATCTTTCTTTTCTTTTGGTAATGGTAGGGGATCTAGAAATGCAATTCTACCTGTTTATTTGGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

359

Amino Acids

40.01

Weight (kDa)

7.06

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	131 - 174	6.4e-13	Ring finger domain
zf-RING_11	PF17123	131 - 160	9.9e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	131 - 173	3.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	131 - 175	2.9e-06	zinc-RING finger domain
zf-C3HC4	PF00097	132 - 173	8.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	140 - 174	5.9e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43420
fragaria_vesca	FvH4_4g03440
malus_domestica	MD13G1212600.v1.1 MD16G1216300.v1.1
prunus_persica	Prupe.1G037600_v2.0.a1
pyrus_communis	pycom13g18440 pycom16g18090
rosa_chinensis	RchiOBHm_Chr4g0392431
rosa_laevigata	RLG00000009807
rosa_multiflora	Rmu_sc0001800.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337650
rosa_rugosa	Rorug03G0338800
rosa_samantha	Rh4AG042800 Rh4BG037800 Rh4CG045800 Rh4DG039900
rosa_wichuraiana	Rw4G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	596
AccB1I	GGYRCC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccI	GTMKAC	2 cut(s)	216, 276
AccII	CGCG	1 cut(s)	244
AciI	CCGC	2 cut(s)	253, 398
AclWI	GGATC	5 cut(s)	12, 22, 584, 678, 1045
AcsI	RAATTY	3 cut(s)	703, 782, 794
AcuI	CTGAAG	1 cut(s)	999
AfiI	CCNNNNNNNGG	3 cut(s)	271, 605, 980
AgsI	TTSAA	8 cut(s)	346, 409, 419, 494, 534, 647, 864, 932
AjnI	CCWGG	1 cut(s)	64
AloI	GAACNNNNNNTCC	2 cut(s)	553, 585
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	5 cut(s)	12, 22, 584, 678, 1045
Ama87I	CYCGRG	1 cut(s)	297
ApeKI	GCWGC	6 cut(s)	195, 453, 913, 935, 943, 946
ApoI	RAATTY	3 cut(s)	703, 782, 794
AspA2I	CCTAGG	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	246
AsuC2I	CCSGG	3 cut(s)	298, 299, 709
AsuHPI	GGTGA	2 cut(s)	86, 738
AsuII	TTCGAA	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	297
AvrII	CCTAGG	1 cut(s)	749
AxyI	CCTNAGG	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	4 cut(s)	267, 429, 636, 694
BbvI	GCAGC	6 cut(s)	182, 465, 925, 947, 955, 958
BccI	CCATC	3 cut(s)	61, 347, 661
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	2 cut(s)	318, 853
BcnI	CCSGG	3 cut(s)	298, 299, 709
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	750, 1041
BfuAI	ACCTGC	1 cut(s)	596
BglII	AGATCT	2 cut(s)	731, 1007
BisI	GCNGC	6 cut(s)	196, 454, 914, 936, 944, 947
BlnI	CCTAGG	1 cut(s)	749
BlsI	GCNGC	6 cut(s)	197, 455, 915, 937, 945, 948
Bme1390I	CCNGG	4 cut(s)	66, 298, 299, 709
BmeT110I	CYCGRG	1 cut(s)	297
BmiI	GGNNCC	2 cut(s)	209, 1071
BmrFI	CCNGG	4 cut(s)	66, 298, 299, 709
BpiI	GAAGAC	4 cut(s)	267, 429, 636, 694
BpmI	CTGGAG	1 cut(s)	48
Bpu14I	TTCGAA	1 cut(s)	436
BpuMI	CCSGG	3 cut(s)	298, 299, 709
BsaAI	YACGTR	1 cut(s)	637
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	4 cut(s)	297, 298, 708, 749
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 605, 980
Bse1I	ACTGG	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	224
Bse3DI	GCAATG	3 cut(s)	505, 684, 945
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	4 cut(s)	297, 298, 708, 749
BseGI	GGATG	2 cut(s)	219, 829
BseLI	CCNNNNNNNGG	3 cut(s)	271, 605, 980
BseMI	GCAATG	3 cut(s)	505, 684, 945
BseMII	CTCAG	2 cut(s)	238, 628
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	6 cut(s)	182, 465, 925, 947, 955, 958
Bsh1236I	CGCG	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	132, 298, 708
BslFI	GGGAC	2 cut(s)	269, 957
BslI	CCNNNNNNNGG	3 cut(s)	271, 605, 980
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	2 cut(s)	269, 957
BsmI	GAATGC	1 cut(s)	833
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	297
Bsp119I	TTCGAA	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	253, 398
BspCNI	CTCAG	2 cut(s)	237, 627
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	209, 1071
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	5 cut(s)	12, 22, 584, 678, 1045
BspQI	GCTCTTC	2 cut(s)	51, 583
BspT104I	TTCGAA	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	3 cut(s)	505, 684, 945
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	4 cut(s)	297, 298, 708, 749
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	212, 565
Bst6I	CTCTTC	2 cut(s)	51, 583
BstBAI	YACGTR	1 cut(s)	637
BstBI	TTCGAA	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	224, 614
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstF5I	GGATG	2 cut(s)	219, 829
BstFNI	CGCG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 932, 952
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	4 cut(s)	64, 296, 297, 707
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	6 cut(s)	182, 465, 925, 947, 955, 958
BstV2I	GAAGAC	4 cut(s)	267, 429, 636, 694
BstX2I	RGATCY	5 cut(s)	4, 589, 731, 1007, 1037
BstYI	RGATCY	5 cut(s)	4, 589, 731, 1007, 1037
Bsu36I	CCTNAGG	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	219, 829
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	4 cut(s)	321, 622, 967, 975
BveI	ACCTGC	1 cut(s)	596
CfoI	GCGC	1 cut(s)	246
Cfr9I	CCCGGG	1 cut(s)	297
CspCI	CAANNNNNGTGG	2 cut(s)	455, 490
CviAII	CATG	5 cut(s)	32, 271, 458, 805, 817
DdeI	CTNAG	2 cut(s)	224, 614
Eam1104I	CTCTTC	2 cut(s)	51, 583
EarI	CTCTTC	2 cut(s)	51, 583
Eco130I	CCWWGG	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	999
Eco81I	CCTNAGG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	297
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	838
EcoT14I	CCWWGG	1 cut(s)	749
EcoT22I	ATGCAT	1 cut(s)	833
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	5 cut(s)	35, 274, 461, 808, 820
FaiI	YATR	9 cut(s)	33, 122, 272, 365, 443, 459, 806, 818, 1075
FalI	AAGNNNNNCTT	4 cut(s)	666, 698, 868, 900
FaqI	GGGAC	2 cut(s)	269, 957
FatI	CATG	5 cut(s)	31, 270, 457, 804, 816
FauI	CCCGC	1 cut(s)	246
FbaI	TGATCA	2 cut(s)	318, 853
FblI	GTMKAC	2 cut(s)	216, 276
Fnu4HI	GCNGC	6 cut(s)	196, 454, 914, 936, 944, 947
FokI	GGATG	2 cut(s)	206, 836
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	6 cut(s)	196, 454, 914, 936, 944, 947
FspBI	CTAG	2 cut(s)	750, 1041
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	6 cut(s)	196, 454, 914, 936, 944, 947
GsuI	CTGGAG	1 cut(s)	48
HapII	CCGG	3 cut(s)	132, 298, 708
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	35, 274, 461, 808, 820
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	3 cut(s)	109, 382, 431
HinfI	GANTC	4 cut(s)	91, 231, 438, 896
HpaII	CCGG	3 cut(s)	132, 298, 708
HphI	GGTGA	2 cut(s)	86, 738
Hpy166II	GTNNAC	2 cut(s)	217, 277
Hpy188I	TCNGA	4 cut(s)	90, 103, 323, 842
Hpy188III	TCNNGA	3 cut(s)	346, 419, 1041
Hpy8I	GTNNAC	2 cut(s)	217, 277
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	753, 974
HpyCH4III	ACNGT	2 cut(s)	212, 565
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	6 cut(s)	340, 453, 831, 943, 987, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 932, 952
HpyF3I	CTNAG	2 cut(s)	224, 614
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	5 cut(s)	35, 274, 461, 808, 820
HspAI	GCGC	1 cut(s)	244
Ksp22I	TGATCA	2 cut(s)	318, 853
LguI	GCTCTTC	2 cut(s)	51, 583
LmnI	GCTCC	3 cut(s)	77, 574, 1069
Lsp1109I	GCAGC	6 cut(s)	182, 465, 925, 947, 955, 958
MaeI	CTAG	2 cut(s)	750, 1041
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	1 cut(s)	36
MboII	GAAGA	8 cut(s)	38, 272, 434, 570, 641, 699, 708, 1017
MfeI	CAATTG	1 cut(s)	505
MflI	RGATCY	5 cut(s)	4, 589, 731, 1007, 1037
MhlI	GDGCHC	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	890
MmeI	TCCRAC	2 cut(s)	126, 892
MnlI	CCTC	9 cut(s)	60, 209, 233, 370, 614, 623, 836, 873, 958
Mph1103I	ATGCAT	1 cut(s)	833
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	3 cut(s)	132, 298, 708
MspR9I	CCNGG	4 cut(s)	66, 298, 299, 709
MunI	CAATTG	1 cut(s)	505
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	250, 932, 952
NciI	CCSGG	3 cut(s)	298, 299, 709
NlaIII	CATG	5 cut(s)	35, 274, 461, 808, 820
NlaIV	GGNNCC	2 cut(s)	209, 1071
NmuCI	GTSAC	1 cut(s)	36
NsiI	ATGCAT	1 cut(s)	833
NspV	TTCGAA	1 cut(s)	436
PciSI	GCTCTTC	2 cut(s)	51, 583
PctI	GAATGC	1 cut(s)	833
PfeI	GAWTC	3 cut(s)	91, 231, 438
PflMI	CCANNNNNTGG	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	64
PkrI	GCNGC	6 cut(s)	197, 455, 915, 937, 945, 948
PleI	GAGTC	1 cut(s)	890
PpsI	GAGTC	1 cut(s)	890
Ppu21I	YACGTR	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	209, 1071
PsuI	RGATCY	5 cut(s)	4, 589, 731, 1007, 1037
PvuII	CAGCTG	1 cut(s)	905
SalI	GTCGAC	1 cut(s)	215
SapI	GCTCTTC	2 cut(s)	51, 583
SatI	GCNGC	6 cut(s)	196, 454, 914, 936, 944, 947
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	4 cut(s)	66, 298, 299, 709
SduI	GDGCHC	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	436
SmaI	CCCGGG	1 cut(s)	299
SsiI	CCGC	2 cut(s)	253, 398
SspMI	CTAG	2 cut(s)	750, 1041
StyD4I	CCNGG	4 cut(s)	64, 296, 297, 707
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	2 cut(s)	212, 565
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	5 cut(s)	216, 306, 436, 559, 701
TfiI	GAWTC	3 cut(s)	91, 231, 438
TscAI	CASTG	4 cut(s)	321, 622, 967, 982
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	6 cut(s)	195, 453, 913, 935, 943, 946
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	642, 840
TspMI	CCCGGG	1 cut(s)	297
TspRI	CASTG	4 cut(s)	321, 622, 967, 982
Van91I	CCANNNNNTGG	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	3 cut(s)	703, 782, 794
XbaI	TCTAGA	1 cut(s)	1040
XmaI	CCCGGG	1 cut(s)	297
XmaJI	CCTAGG	1 cut(s)	749
XmiI	GTMKAC	2 cut(s)	216, 276
XspI	CTAG	2 cut(s)	750, 1041
Zsp2I	ATGCAT	1 cut(s)	833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.