Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001800.1

Orthogroup ID

OG0014022

Physical Location & Seq

Genomic Coordinates Forward (+)

3110 .. 4219

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001800.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atggatcttgtaagaaaaggctacgtgattcatgtctcttcatcagaagcacaaacacttgctccaattacaagtccaggaagctcaatctttgggactcctattcaccattcagacacaagcttccccattatagcaattgccataataggaattatagccacggctttcttgctagtgagctactacatctttgtcatcaagtgctgcctcaactggcaccgtgtggatctcctcaggcgattttcactgtcacgaaaccggcgcgacgaagaccagctaatggtgtactcgccgggtttggagacccgagggctcgatgaagctgtgatcagatcaatcccattgttgcagttcaagaaagaagggaagaacagaggtgggtttgaacaaggaagcttgttttgtgagtgtgctgtttgcttgaatgagtttcaagaagatgagaagctgaggatcatacccaactgcagccatgttttccacattgactgcattgacgtttggcttcaaaacaacgcgaattgcccgctttgtagaacaagcatttcatccaacacaacccggttccaattcgatcaaatcgtggctccgagctcttcacctcaaaatccaacccctgggagtctcgatggaggcgacgacgacttcgtggtgatcgaattgagcaacgaaaacaatccggcggatcaagcgttgatgcttggagtgcaagaaaaattgaactcaggggagttgtcagtgaagtccattagtccttccccaaggaaattggaacaaattagaacatttgtgcccaaaaaggcaagaaagtttcacaacaaggttactagtatgggtgatgagtgcattgacattaggggcaaagatgagcaattctccatccaacccataaggaggtctttctctatggactcatctaatgatagacagctctatttggcagttcaagaagctgtgcagcagcaaagccaagtcagtgaggtcagtccaattgaaggttgcagtagcagtactagttctagagtcagaaggtctttcttttcttttgggcatggtaggggatctagaagtaacaatgcaattctgcctgtttatttggagccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

369

Amino Acids

41.18

Weight (kDa)

6.46

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43420
fragaria_vesca	FvH4_4g03440
malus_domestica	MD13G1212600.v1.1 MD16G1216300.v1.1
prunus_persica	Prupe.1G037600_v2.0.a1
pyrus_communis	pycom13g18440 pycom16g18090
rosa_chinensis	RchiOBHm_Chr4g0392431
rosa_laevigata	RLG00000009807
rosa_multiflora	Rmu_sc0001800.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337650
rosa_rugosa	Rorug03G0338800
rosa_samantha	Rh4AG042800 Rh4BG037800 Rh4CG045800 Rh4DG039900
rosa_wichuraiana	Rw4G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AccB7I	CCANNNNNTGG	2 cut(s)	283, 620
AccII	CGCG	2 cut(s)	267, 521
AciI	CCGC	2 cut(s)	530, 686
AclWI	GGATC	5 cut(s)	12, 237, 464, 696, 1072
AdeI	CACNNNGTG	1 cut(s)	226
AfaI	GTAC	2 cut(s)	290, 1015
AfiI	CCNNNNNNNGG	4 cut(s)	283, 620, 897, 998
AgsI	TTSAA	8 cut(s)	358, 389, 427, 437, 512, 724, 950, 998
AhlI	ACTAGT	2 cut(s)	830, 1016
AjnI	CCWGG	2 cut(s)	76, 619
Alw21I	GWGCWC	1 cut(s)	599
Alw26I	GTCTC	3 cut(s)	40, 299, 632
AlwI	GGATC	5 cut(s)	12, 237, 464, 696, 1072
Ama87I	CYCGRG	1 cut(s)	309
ApeKI	GCWGC	4 cut(s)	207, 471, 961, 964
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AspLEI	GCGC	1 cut(s)	267
AsuC2I	CCSGG	2 cut(s)	297, 565
AsuHPI	GGTGA	4 cut(s)	98, 594, 667, 851
AvaI	CYCGRG	1 cut(s)	309
AxyI	CCTNAGG	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	798
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	318, 599
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	599
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	194, 483, 973, 976
BccI	CCATC	2 cut(s)	626, 890
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	2 cut(s)	78, 621
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	297, 565
BcoDI	GTCTC	3 cut(s)	40, 299, 632
BcuI	ACTAGT	2 cut(s)	830, 1016
BfaI	CTAG	5 cut(s)	176, 831, 1017, 1023, 1068
BfmI	CTRYAG	1 cut(s)	469
BisI	GCNGC	4 cut(s)	208, 472, 962, 965
BlsI	GCNGC	4 cut(s)	209, 473, 963, 966
BmcAI	AGTACT	1 cut(s)	1015
Bme1390I	CCNGG	4 cut(s)	78, 297, 565, 621
BmeT110I	CYCGRG	1 cut(s)	309
BmiI	GGNNCC	4 cut(s)	221, 569, 591, 1104
BmrFI	CCNGG	4 cut(s)	78, 297, 565, 621
BmsI	GCATC	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
Bpu10I	CCTNAGC	1 cut(s)	452
BpuMI	CCSGG	2 cut(s)	297, 565
BsaAI	YACGTR	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	5 cut(s)	162, 310, 619, 620, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 620, 897, 998
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	221
Bse21I	CCTNAGG	1 cut(s)	236
BseBI	CCWGG	2 cut(s)	78, 621
BseDI	CCNNGG	5 cut(s)	162, 310, 619, 620, 764
BseGI	GGATG	2 cut(s)	551, 882
BseLI	CCNNNNNNNGG	4 cut(s)	283, 620, 897, 998
BseMII	CTCAG	3 cut(s)	250, 443, 741
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	798
BseXI	GCAGC	4 cut(s)	194, 483, 973, 976
BsgI	GTGCAG	1 cut(s)	980
Bsh1236I	CGCG	2 cut(s)	267, 521
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	599
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	4 cut(s)	262, 296, 565, 683
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	4 cut(s)	283, 620, 897, 998
BsmAI	GTCTC	3 cut(s)	40, 299, 632
BsmFI	GGGAC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	309
Bsp1286I	GDGCHC	3 cut(s)	318, 599, 798
Bsp143I	GATC	9 cut(s)	4, 229, 330, 335, 456, 577, 657, 688, 1064
BspACI	CCGC	2 cut(s)	530, 686
BspCNI	CTCAG	3 cut(s)	249, 444, 740
BspFNI	CGCG	2 cut(s)	267, 521
BspLI	GGNNCC	4 cut(s)	221, 569, 591, 1104
BspMAI	CTGCAG	1 cut(s)	473
BspPI	GGATC	5 cut(s)	12, 237, 464, 696, 1072
BspQI	GCTCTTC	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	5 cut(s)	162, 310, 619, 620, 764
BssMI	GATC	9 cut(s)	4, 229, 330, 335, 456, 577, 657, 688, 1064
BssT1I	CCWWGG	1 cut(s)	764
Bst2UI	CCWGG	2 cut(s)	78, 621
Bst4CI	ACNGT	2 cut(s)	224, 252
Bst6I	CTCTTC	2 cut(s)	43, 604
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	3 cut(s)	236, 452, 727
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	551, 882
BstFNI	CGCG	2 cut(s)	267, 521
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	9 cut(s)	7, 232, 333, 338, 459, 580, 660, 691, 1067
BstMAI	GTCTC	3 cut(s)	40, 299, 632
BstMBI	GATC	9 cut(s)	4, 229, 330, 335, 456, 577, 657, 688, 1064
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 709
BstNI	CCWGG	2 cut(s)	78, 621
BstSCI	CCNGG	4 cut(s)	76, 295, 563, 619
BstSFI	CTRYAG	1 cut(s)	469
BstSLI	GKGCMC	1 cut(s)	798
BstUI	CGCG	2 cut(s)	267, 521
BstV1I	GCAGC	4 cut(s)	194, 483, 973, 976
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	3 cut(s)	4, 229, 1064
BstYI	RGATCY	3 cut(s)	4, 229, 1064
Bsu36I	CCTNAGG	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	551, 882
BtsIMutI	CAGTG	3 cut(s)	248, 747, 985
Cac8I	GCNNGC	1 cut(s)	530
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	289, 1014
CviAII	CATG	3 cut(s)	32, 476, 1055
CviQI	GTAC	2 cut(s)	289, 1014
DdeI	CTNAG	3 cut(s)	236, 452, 727
DpnI	GATC	9 cut(s)	6, 231, 332, 337, 458, 579, 659, 690, 1066
DpnII	GATC	9 cut(s)	4, 229, 330, 335, 456, 577, 657, 688, 1064
DraIII	CACNNNGTG	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	43, 604
EarI	CTCTTC	2 cut(s)	43, 604
EciI	GGCGGA	1 cut(s)	701
Ecl136II	GAGCTC	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	764
Eco24I	GRGCYC	2 cut(s)	318, 599
Eco31I	GGTCTC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	597
Eco81I	CCTNAGG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	76, 619
EcoT14I	CCWWGG	1 cut(s)	764
EcoT38I	GRGCYC	2 cut(s)	318, 599
ErhI	CCWWGG	1 cut(s)	764
FaeI	CATG	3 cut(s)	35, 479, 1058
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	31, 475, 1054
FauI	CCCGC	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	208, 472, 962, 965
FokI	GGATG	2 cut(s)	538, 869
FriOI	GRGCYC	2 cut(s)	318, 599
Fsp4HI	GCNGC	4 cut(s)	208, 472, 962, 965
FspBI	CTAG	5 cut(s)	176, 831, 1017, 1023, 1068
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	4 cut(s)	208, 472, 962, 965
HapII	CCGG	4 cut(s)	262, 296, 565, 683
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	35, 479, 1058
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HindIII	AAGCTT	2 cut(s)	121, 397
HinfI	GANTC	5 cut(s)	28, 97, 625, 914, 1026
HpaII	CCGG	4 cut(s)	262, 296, 565, 683
HphI	GGTGA	4 cut(s)	98, 594, 667, 851
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	5 cut(s)	46, 115, 335, 594, 1031
Hpy188III	TCNNGA	7 cut(s)	255, 358, 437, 629, 950, 1023, 1068
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	3 cut(s)	272, 644, 647
HpyAV	CCTTC	4 cut(s)	359, 768, 992, 1026
HpyCH4III	ACNGT	2 cut(s)	224, 252
HpyCH4IV	ACGT	2 cut(s)	24, 501
HpyCH4V	TGCA	8 cut(s)	352, 471, 495, 712, 849, 961, 1005, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 709
HpyF3I	CTNAG	3 cut(s)	236, 452, 727
HpySE526I	ACGT	2 cut(s)	24, 501
Hsp92II	CATG	3 cut(s)	35, 479, 1058
HspAI	GCGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	9 cut(s)	4, 229, 330, 335, 456, 577, 657, 688, 1064
LguI	GCTCTTC	1 cut(s)	604
LmnI	GCTCC	3 cut(s)	67, 595, 1102
Lsp1109I	GCAGC	4 cut(s)	194, 483, 973, 976
LweI	GCATC	1 cut(s)	690
MaeI	CTAG	5 cut(s)	176, 831, 1017, 1023, 1068
MaeII	ACGT	2 cut(s)	24, 501
MaeIII	GTNAC	3 cut(s)	252, 826, 1073
MalI	GATC	9 cut(s)	6, 231, 332, 337, 458, 579, 659, 690, 1066
MboI	GATC	9 cut(s)	4, 229, 330, 335, 456, 577, 657, 688, 1064
MboII	GAAGA	5 cut(s)	30, 284, 382, 452, 591
MfeI	CAATTG	2 cut(s)	138, 993
MflI	RGATCY	3 cut(s)	4, 229, 1064
MhlI	GDGCHC	3 cut(s)	318, 599, 798
MlyI	GAGTC	4 cut(s)	91, 634, 908, 1035
MmeI	TCCRAC	3 cut(s)	579, 638, 910
MnlI	CCTC	9 cut(s)	221, 245, 305, 371, 447, 615, 629, 891, 976
MspI	CCGG	4 cut(s)	262, 296, 565, 683
MspR9I	CCNGG	4 cut(s)	78, 297, 565, 621
MunI	CAATTG	2 cut(s)	138, 993
MvaI	CCWGG	2 cut(s)	78, 621
MvnI	CGCG	2 cut(s)	267, 521
MwoI	GCNNNNNNNGC	2 cut(s)	692, 709
NciI	CCSGG	2 cut(s)	297, 565
NdeII	GATC	9 cut(s)	4, 229, 330, 335, 456, 577, 657, 688, 1064
NlaIII	CATG	3 cut(s)	35, 479, 1058
NlaIV	GGNNCC	4 cut(s)	221, 569, 591, 1104
NmuCI	GTSAC	1 cut(s)	252
PasI	CCCWGGG	1 cut(s)	620
PciSI	GCTCTTC	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	4 cut(s)	582, 636, 648, 657
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	2 cut(s)	283, 620
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	209, 473, 963, 966
PleI	GAGTC	4 cut(s)	91, 633, 908, 1034
PpsI	GAGTC	4 cut(s)	91, 633, 908, 1034
Ppu21I	YACGTR	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	76, 619
PspGI	CCWGG	2 cut(s)	76, 619
PspN4I	GGNNCC	4 cut(s)	221, 569, 591, 1104
PstI	CTGCAG	1 cut(s)	473
PsuI	RGATCY	3 cut(s)	4, 229, 1064
RsaI	GTAC	2 cut(s)	290, 1015
RsaNI	GTAC	2 cut(s)	289, 1014
SacI	GAGCTC	1 cut(s)	599
SapI	GCTCTTC	1 cut(s)	604
SatI	GCNGC	4 cut(s)	208, 472, 962, 965
Sau3AI	GATC	9 cut(s)	4, 229, 330, 335, 456, 577, 657, 688, 1064
ScaI	AGTACT	1 cut(s)	1015
SchI	GAGTC	4 cut(s)	91, 634, 908, 1035
ScrFI	CCNGG	4 cut(s)	78, 297, 565, 621
SduI	GDGCHC	3 cut(s)	318, 599, 798
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	1 cut(s)	469
SpeI	ACTAGT	2 cut(s)	830, 1016
SsiI	CCGC	2 cut(s)	530, 686
SspMI	CTAG	5 cut(s)	176, 831, 1017, 1023, 1068
SstI	GAGCTC	1 cut(s)	599
StyD4I	CCNGG	4 cut(s)	76, 295, 563, 619
StyI	CCWWGG	1 cut(s)	764
TaaI	ACNGT	2 cut(s)	224, 252
TaiI	ACGT	2 cut(s)	27, 504
TaqI	TCGA	4 cut(s)	318, 576, 630, 660
TatI	WGTACW	2 cut(s)	288, 1013
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	3 cut(s)	255, 747, 985
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	4 cut(s)	207, 471, 961, 964
Tsp45I	GTSAC	1 cut(s)	252
TspDTI	ATGAA	4 cut(s)	20, 30, 336, 540
TspRI	CASTG	3 cut(s)	255, 747, 985
Van91I	CCANNNNNTGG	2 cut(s)	283, 620
XbaI	TCTAGA	2 cut(s)	1022, 1067
XspI	CTAG	5 cut(s)	176, 831, 1017, 1023, 1068
ZrmI	AGTACT	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.