Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014022

Physical Location & Seq

Genomic Coordinates Reverse (-)

2606963 .. 2608051

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G037600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGATCTTGTAAGCAAAAGCTACTTGATCCATTTGTCACAAGCTCTTCCTCCAACAACAAGTCCAGGAAGGACAATCTTTGGGGCTCCTGTTCATCATTCAGACACAAGTTTCCCCATTATAGCCATTGCCATAATAGGAATTATAGCCACAGCTTTCTTGCTTGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTTAATTGGCACCGTGTTGATCTTCTCAGACGATTCTCATTATCGCGAAATAGGCGCGATGAAGAGCAGCTAATGGCCTACTCTCCCGGGTTAGAGACTCGAGGGCTTGATGAGGCTGTGATCAGATCAATCCCATTGTTGCAATTCAAGAAAGATAGGAACAGAGGATTTGAAGAGGGAAGCTTTTGTGAGTGTGCAGTTTGCTTGAATGAGTTCCAAGAAGATGAGAAGCTGAGGATCATACCAAATTGCAGCCACATTTTTCACATTGATTGCATTGATGTTTGGCTTCAAAGCAATGCCAATTGCCCACTTTGCAGAACAAGCATTTCGACCACAACCCGGTTTCCATTCGATCGAATTGTTGCTCCAAGCTCTTCACCCCAAGATCCAAGTCCATATGCAGGTAGCCTAAGTGGCGGTGATGAAGACTACGTGGTGATCGAATTGAGTAACGATAATTCGATGGAGCAAACAATGCTTGGGAGGCAAGAAAGACTGAATTCAGGGGAGGCGTCAGTGATTTCTATTAGCCCTTCACCAAGGAAATTGGAAAACAGAAGTGTGCCCAAGAAATTAGCAAGAAAGTTTCACAACAAGGTTACAAGCATGGGGGATGAATGTATTGACATTAGAGGCAAAGATGAGCAGTTCTCAATCCAACCCATAAGGAGGTCTTTCTCAATGGACTCTTCAGCTGATAGGCAGCTCTATTTGGCAGTTCAAGAGGCTGTGCAGCAGCAGCAGCAGCAGCAGCAGCACAGGCAAGTCAGTGAGATGAGTCCCATTGAAGGTTGTAGTAGTAGTGGTAGGGTTAGAAGATCTTTCTTTTCTTTTGGAAATGGTAGGGGATCTAGGAGTGCAATTCTTCCTGTTTATTTGGAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

363

Amino Acids

40.78

Weight (kDa)

7.06

Isoelectric Point (pI)

68.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43420
fragaria_vesca	FvH4_4g03440
malus_domestica	MD13G1212600.v1.1 MD16G1216300.v1.1
prunus_persica	Prupe.1G037600_v2.0.a1
pyrus_communis	pycom13g18440 pycom16g18090
rosa_chinensis	RchiOBHm_Chr4g0392431
rosa_laevigata	RLG00000009807
rosa_multiflora	Rmu_sc0001800.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337650
rosa_rugosa	Rorug03G0338800
rosa_samantha	Rh4AG042800 Rh4BG037800 Rh4CG045800 Rh4DG039900
rosa_wichuraiana	Rw4G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	207
AccII	CGCG	2 cut(s)	244, 255
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	5 cut(s)	12, 22, 443, 581, 1057
AcsI	RAATTY	1 cut(s)	700
AcuI	CTGAAG	1 cut(s)	876
AcyI	GRCGYC	1 cut(s)	713
AfiI	CCNNNNNNNGG	4 cut(s)	540, 602, 870, 989
AgsI	TTSAA	6 cut(s)	346, 371, 406, 491, 923, 989
AjnI	CCWGG	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	287, 1076
AlwI	GGATC	5 cut(s)	12, 22, 443, 581, 1057
Ama87I	CYCGRG	2 cut(s)	284, 297
AoxI	GGCC	1 cut(s)	273
ApoI	RAATTY	1 cut(s)	700
Asp700I	GAANNNNTTC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	255
AsuC2I	CCSGG	3 cut(s)	285, 286, 541
AsuHPI	GGTGA	4 cut(s)	570, 632, 649, 729
AvaI	CYCGRG	2 cut(s)	284, 297
BaeGI	GKGCMC	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	633
BbvCI	CCTCAGC	1 cut(s)	431
BccI	CCATC	1 cut(s)	658
BciT130I	CCWGG	1 cut(s)	66
BclI	TGATCA	2 cut(s)	186, 318
BcnI	CCSGG	3 cut(s)	285, 286, 541
BcoDI	GTCTC	2 cut(s)	287, 1076
BfaI	CTAG	1 cut(s)	1053
BfuAI	ACCTGC	1 cut(s)	593
BglI	GCCNNNNNGGC	1 cut(s)	615
BglII	AGATCT	1 cut(s)	1019
Bme1390I	CCNGG	4 cut(s)	66, 285, 286, 541
BmeT110I	CYCGRG	2 cut(s)	284, 297
BmiI	GGNNCC	2 cut(s)	87, 209
BmrFI	CCNGG	4 cut(s)	66, 285, 286, 541
BpiI	GAAGAC	1 cut(s)	633
BplI	GAGNNNNNCTC	2 cut(s)	836, 868
Bpu10I	CCTNAGC	1 cut(s)	431
BpuMI	CCSGG	3 cut(s)	285, 286, 541
BsaAI	YACGTR	1 cut(s)	634
BsaHI	GRCGYC	1 cut(s)	713
BsaJI	CCNNGG	2 cut(s)	284, 740
Bsc4I	CCNNNNNNNGG	4 cut(s)	540, 602, 870, 989
Bse3DI	GCAATG	2 cut(s)	126, 502
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	284, 740
BseGI	GGATG	1 cut(s)	820
BseLI	CCNNNNNNNGG	4 cut(s)	540, 602, 870, 989
BseMI	GCAATG	2 cut(s)	126, 502
BseMII	CTCAG	2 cut(s)	238, 422
BseSI	GKGCMC	1 cut(s)	768
BsgI	GTGCAG	2 cut(s)	414, 953
Bsh1236I	CGCG	2 cut(s)	244, 255
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	556
BsiHKCI	CYCGRG	2 cut(s)	284, 297
BsiSI	CCGG	2 cut(s)	285, 541
BslFI	GGGAC	1 cut(s)	966
BslI	CCNNNNNNNGG	4 cut(s)	540, 602, 870, 989
BsmAI	GTCTC	2 cut(s)	287, 1076
BsmFI	GGGAC	1 cut(s)	966
BsnI	GGCC	1 cut(s)	275
BsoBI	CYCGRG	2 cut(s)	284, 297
Bsp1286I	GDGCHC	2 cut(s)	88, 768
Bsp68I	TCGCGA	1 cut(s)	244
BspACI	CCGC	1 cut(s)	618
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	2 cut(s)	237, 423
BspFNI	CGCG	2 cut(s)	244, 255
BspLI	GGNNCC	2 cut(s)	87, 209
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	5 cut(s)	12, 22, 443, 581, 1057
BspQI	GCTCTTC	3 cut(s)	51, 255, 580
BspT107I	GGYRCC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	126, 502
BssECI	CCNNGG	2 cut(s)	284, 740
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	740
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	5 cut(s)	51, 255, 366, 580, 895
BstACI	GRCGYC	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	676
BstBAI	YACGTR	1 cut(s)	634
BstDEI	CTNAG	3 cut(s)	224, 431, 611
BstF5I	GGATG	1 cut(s)	820
BstFNI	CGCG	2 cut(s)	244, 255
BstHHI	GCGC	1 cut(s)	255
BstMAI	GTCTC	2 cut(s)	287, 1076
BstMCI	CGRYCG	1 cut(s)	556
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	4 cut(s)	64, 283, 284, 539
BstSLI	GKGCMC	1 cut(s)	768
BstUI	CGCG	2 cut(s)	244, 255
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	4 cut(s)	4, 586, 1019, 1049
BstYI	RGATCY	4 cut(s)	4, 586, 1019, 1049
BsuRI	GGCC	1 cut(s)	275
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	820
BtsIMutI	CAGTG	2 cut(s)	723, 976
BtuMI	TCGCGA	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	593
CfoI	GCGC	1 cut(s)	255
Cfr9I	CCCGGG	1 cut(s)	284
CseI	GACGC	1 cut(s)	702
CviAII	CATG	1 cut(s)	808
DdeI	CTNAG	3 cut(s)	224, 431, 611
Eam1104I	CTCTTC	5 cut(s)	51, 255, 366, 580, 895
EarI	CTCTTC	5 cut(s)	51, 255, 366, 580, 895
Eco130I	CCWWGG	1 cut(s)	740
Eco24I	GRGCYC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	876
Eco88I	CYCGRG	2 cut(s)	284, 297
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	740
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	740
FaeI	CATG	1 cut(s)	811
FaiI	YATR	9 cut(s)	122, 134, 146, 440, 598, 600, 809, 866, 1087
FalI	AAGNNNNNCTT	2 cut(s)	859, 891
FaqI	GGGAC	1 cut(s)	966
FatI	CATG	1 cut(s)	807
FauNDI	CATATG	1 cut(s)	598
FbaI	TGATCA	2 cut(s)	186, 318
FokI	GGATG	1 cut(s)	827
FriOI	GRGCYC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	1053
GlaI	GCGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	2 cut(s)	285, 541
HgaI	GACGC	1 cut(s)	702
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	1 cut(s)	811
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	4 cut(s)	231, 295, 887, 979
HpaII	CCGG	2 cut(s)	285, 541
HphI	GGTGA	4 cut(s)	570, 632, 649, 729
Hpy188I	TCNGA	3 cut(s)	103, 227, 323
Hpy188III	TCNNGA	3 cut(s)	243, 346, 923
HpyAV	CCTTC	3 cut(s)	63, 744, 983
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	633
HpyCH4V	TGCA	8 cut(s)	340, 395, 450, 474, 516, 602, 934, 1061
HpyF3I	CTNAG	3 cut(s)	224, 431, 611
HpySE526I	ACGT	1 cut(s)	633
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	1 cut(s)	811
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	2 cut(s)	186, 318
LguI	GCTCTTC	3 cut(s)	51, 255, 580
LmnI	GCTCC	3 cut(s)	91, 571, 667
LpnPI	CCDG	9 cut(s)	51, 78, 102, 298, 554, 588, 690, 946, 1083
MaeI	CTAG	1 cut(s)	1053
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	3 cut(s)	36, 650, 799
MfeI	CAATTG	1 cut(s)	502
MflI	RGATCY	4 cut(s)	4, 586, 1019, 1049
MhlI	GDGCHC	2 cut(s)	88, 768
MlyI	GAGTC	3 cut(s)	289, 881, 988
MmeI	TCCRAC	2 cut(s)	77, 883
MroXI	GAANNNNTTC	1 cut(s)	410
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	2 cut(s)	285, 541
MspR9I	CCNGG	4 cut(s)	66, 285, 286, 541
MunI	CAATTG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	2 cut(s)	244, 255
NciI	CCSGG	3 cut(s)	285, 286, 541
NdeI	CATATG	1 cut(s)	598
NlaIII	CATG	1 cut(s)	811
NlaIV	GGNNCC	2 cut(s)	87, 209
NmuCI	GTSAC	1 cut(s)	36
NruI	TCGCGA	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	297
PciSI	GCTCTTC	3 cut(s)	51, 255, 580
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	231
PfoI	TCCNGGA	1 cut(s)	64
Ple19I	CGATCG	1 cut(s)	556
PleI	GAGTC	3 cut(s)	289, 881, 987
PpsI	GAGTC	3 cut(s)	289, 881, 987
Ppu21I	YACGTR	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	87, 209
PspXI	VCTCGAGB	1 cut(s)	297
PsuI	RGATCY	4 cut(s)	4, 586, 1019, 1049
PvuI	CGATCG	1 cut(s)	556
PvuII	CAGCTG	1 cut(s)	896
RruI	TCGCGA	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	3 cut(s)	51, 255, 580
SaqAI	TTAA	1 cut(s)	201
SchI	GAGTC	3 cut(s)	289, 881, 988
ScrFI	CCNGG	4 cut(s)	66, 285, 286, 541
SduI	GDGCHC	2 cut(s)	88, 768
Sfr274I	CTCGAG	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	297
SmaI	CCCGGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
SsiI	CCGC	1 cut(s)	618
SspMI	CTAG	1 cut(s)	1053
StyD4I	CCNGG	4 cut(s)	64, 283, 284, 539
StyI	CCWWGG	1 cut(s)	740
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	6 cut(s)	298, 530, 552, 556, 642, 662
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	723, 976
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	4 cut(s)	83, 273, 639, 831
TspMI	CCCGGG	1 cut(s)	284
TspRI	CASTG	2 cut(s)	723, 976
XapI	RAATTY	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	297
XmaI	CCCGGG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.