Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014022

Physical Location & Seq

Genomic Coordinates Reverse (-)

14543682 .. 14545139

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAGCAGAGAGGTGAATTTTTCCTTCGCTTATAAGTTTCAAGATCTAGGAAGAAAACCCCATTTAGTTTTATTGTTCATATCTCATTTTTTTTTCATGGATCTTGGAAGCAAAAGCTACTTGATCCACGTGTCACAAGCTCTTCCTCCAACAACTCCGGGAAGCTCCATTTTTGGAACTCCGATTCACCATTCCGACACAAGCTTCCCAATTATAGCGGTTGTCGTTATAGGAATTATAGCCACAGCTTTCTTGCTCGTCAGCTACTACATCTTTGTTATCAAATGCTGCCTCAACTGGCACCGAGTCGATATCCTCGGACGATTCTCATTGTCGCGTAATACGCGGGACGAAGACCAGCTAATGGTGTACTCCCCTGGGATAGAGACCCGGGGGCTTGACGAGGCGGTGATCAGATCAATCCCATTGTTGCAATTCAAGAAAGACGGAAATTACAGAGGACTTGGAGAGGGAAGCTTTCACGAATGTGCGGTTTGCTTGAATGAGTTTCATGAAGACGAGAAGCTTCGCATCATACCAAACTGCAGCCACGTTTTCCACATTGATTGCATTGATGTTTGGCTTCAAAGCAATGCCAATTGCCCACTTTGTAGAACAAGCATTTCAACTGCACCCCGATATCCTTTCGGTCCAACTGTCGCTCCAAGCTCTTCTCCCCGAGATCCAAGTCCAAACGCAGGTAGCCTCAGTGGCGGTGATGAAGACTACGTGGTGATCGAATTGAGCAACGATAACTCGATGGATCAACCAATGCTTGGAAGACAAGAAATATTGAATTCCGGGGAGTTATCACTATCACTAAGGGCTATTAGTCCTTCACCAAGGAAATTGGAACATAAAGTTTTGCCCAAGAAATTTGGAAGAAAGTTTCACAGCAAGGTTACAAGCATGGGGGATGAATGCATTGATATTAGAGGGAAGGATGAGCAGTTTTCGATCCAACCAATAAGGAGGTCTTTCTCAATGGACTCATCAGCTGATAGGCAGCTTTATTTGGCAGTTCAAGAGGCAATGCAGCAGCAAAGGCAAGTCAATGAGGTCAGTCCCATTGAAGGTTGCAGTAGTACTGGTAGTGGTAGAGTTAGAAGATCTTTCTTTTCTTTTGGCAATGGTAGGGGAACCCGAAATGCAATTCTGCCTGTTTATTTGGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

393

Amino Acids

43.86

Weight (kDa)

7.17

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43420
fragaria_vesca	FvH4_4g03440
malus_domestica	MD13G1212600.v1.1 MD16G1216300.v1.1
prunus_persica	Prupe.1G037600_v2.0.a1
pyrus_communis	pycom13g18440 pycom16g18090
rosa_chinensis	RchiOBHm_Chr4g0392431
rosa_laevigata	RLG00000009807
rosa_multiflora	Rmu_sc0001800.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337650
rosa_rugosa	Rorug03G0338800
rosa_samantha	Rh4AG042800 Rh4BG037800 Rh4CG045800 Rh4DG039900
rosa_wichuraiana	Rw4G003340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
Acc36I	ACCTGC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	300
AccB7I	CCANNNNNTGG	2 cut(s)	364, 776
AccII	CGCG	2 cut(s)	337, 346
AciI	CCGC	5 cut(s)	218, 346, 407, 491, 714
AclWI	GGATC	5 cut(s)	108, 118, 677, 771, 952
AcsI	RAATTY	3 cut(s)	16, 796, 875
AcvI	CACGTG	1 cut(s)	130
AfaI	GTAC	2 cut(s)	371, 1087
AfiI	CCNNNNNNNGG	4 cut(s)	364, 698, 776, 1073
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	8 cut(s)	41, 439, 502, 587, 627, 796, 1025, 1073
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	486
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	5 cut(s)	108, 118, 677, 771, 952
Ama87I	CYCGRG	2 cut(s)	390, 678
ApeKI	GCWGC	5 cut(s)	288, 546, 1006, 1036, 1039
ApoI	RAATTY	3 cut(s)	16, 796, 875
AspS9I	GGNCC	1 cut(s)	650
AsuC2I	CCSGG	4 cut(s)	159, 391, 392, 802
AsuHPI	GGTGA	6 cut(s)	25, 179, 421, 728, 745, 831
AvaI	CYCGRG	2 cut(s)	390, 678
AvaII	GGWCC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	300
BbrPI	CACGTG	1 cut(s)	130
BbsI	GAAGAC	4 cut(s)	360, 522, 729, 787
BbvI	GCAGC	5 cut(s)	275, 558, 1018, 1048, 1051
BccI	CCATC	1 cut(s)	754
BciT130I	CCWGG	1 cut(s)	378
BclI	TGATCA	1 cut(s)	411
BcnI	CCSGG	4 cut(s)	159, 391, 392, 802
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	544
BfuAI	ACCTGC	1 cut(s)	689
BglI	GCCNNNNNGGC	1 cut(s)	711
BglII	AGATCT	2 cut(s)	43, 1109
BisI	GCNGC	5 cut(s)	289, 547, 1007, 1037, 1040
BlsI	GCNGC	5 cut(s)	290, 548, 1008, 1038, 1041
BmcAI	AGTACT	1 cut(s)	1087
Bme1390I	CCNGG	5 cut(s)	159, 378, 391, 392, 802
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	2 cut(s)	390, 678
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	3 cut(s)	302, 1141, 1173
BmrFI	CCNGG	5 cut(s)	159, 378, 391, 392, 802
BmsI	GCATC	1 cut(s)	540
BpiI	GAAGAC	4 cut(s)	360, 522, 729, 787
BpuMI	CCSGG	4 cut(s)	159, 391, 392, 802
BsaAI	YACGTR	2 cut(s)	130, 730
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	7 cut(s)	316, 376, 377, 390, 391, 801, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	364, 698, 776, 1073
Bse1I	ACTGG	2 cut(s)	302, 1093
Bse3DI	GCAATG	3 cut(s)	598, 1038, 1135
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	7 cut(s)	316, 376, 377, 390, 391, 801, 842
BseGI	GGATG	2 cut(s)	922, 949
BseLI	CCNNNNNNNGG	4 cut(s)	364, 698, 776, 1073
BseMI	GCAATG	3 cut(s)	598, 1038, 1135
BseMII	CTCAG	1 cut(s)	721
BseNI	ACTGG	2 cut(s)	302, 1093
BseXI	GCAGC	5 cut(s)	275, 558, 1018, 1048, 1051
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	2 cut(s)	337, 346
BshNI	GGYRCC	1 cut(s)	300
BsiHKCI	CYCGRG	2 cut(s)	390, 678
BsiSI	CCGG	3 cut(s)	158, 391, 801
BslFI	GGGAC	2 cut(s)	362, 1050
BslI	CCNNNNNNNGG	4 cut(s)	364, 698, 776, 1073
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	362, 1050
BsmI	GAATGC	1 cut(s)	926
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	390, 678
BspACI	CCGC	5 cut(s)	218, 346, 407, 491, 714
BspCNI	CTCAG	1 cut(s)	720
BspFNI	CGCG	2 cut(s)	337, 346
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	3 cut(s)	302, 1141, 1173
BspMAI	CTGCAG	1 cut(s)	548
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	5 cut(s)	108, 118, 677, 771, 952
BspQI	GCTCTTC	2 cut(s)	147, 676
BspT107I	GGYRCC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	380
BsrDI	GCAATG	3 cut(s)	598, 1038, 1135
BsrI	ACTGG	2 cut(s)	302, 1093
BssECI	CCNNGG	7 cut(s)	316, 376, 377, 390, 391, 801, 842
BssT1I	CCWWGG	1 cut(s)	842
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	2 cut(s)	147, 676
BstBAI	YACGTR	2 cut(s)	130, 730
BstDEI	CTNAG	2 cut(s)	707, 821
BstF5I	GGATG	2 cut(s)	922, 949
BstFNI	CGCG	2 cut(s)	337, 346
BstMAI	GTCTC	1 cut(s)	380
BstMWI	GCNNNNNNNGC	3 cut(s)	343, 711, 1045
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	5 cut(s)	157, 376, 389, 390, 800
BstSFI	CTRYAG	1 cut(s)	544
BstUI	CGCG	2 cut(s)	337, 346
BstV1I	GCAGC	5 cut(s)	275, 558, 1018, 1048, 1051
BstV2I	GAAGAC	4 cut(s)	360, 522, 729, 787
BstX2I	RGATCY	4 cut(s)	43, 100, 682, 1109
BstYI	RGATCY	4 cut(s)	43, 100, 682, 1109
BtsCI	GGATG	2 cut(s)	922, 949
BtsIMutI	CAGTG	1 cut(s)	715
BveI	ACCTGC	1 cut(s)	689
CciI	TCATGA	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	650
Cfr9I	CCCGGG	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	370, 1086
CspCI	CAANNNNNGTGG	2 cut(s)	548, 583
CviAII	CATG	3 cut(s)	97, 512, 910
CviQI	GTAC	2 cut(s)	370, 1086
DdeI	CTNAG	2 cut(s)	707, 821
Eam1104I	CTCTTC	2 cut(s)	147, 676
EarI	CTCTTC	2 cut(s)	147, 676
Eco130I	CCWWGG	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	380
Eco32I	GATATC	2 cut(s)	313, 641
Eco47I	GGWCC	1 cut(s)	650
Eco72I	CACGTG	1 cut(s)	130
Eco88I	CYCGRG	2 cut(s)	390, 678
EcoRI	GAATTC	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	376
EcoRV	GATATC	2 cut(s)	313, 641
EcoT14I	CCWWGG	1 cut(s)	842
EcoT22I	ATGCAT	1 cut(s)	926
ErhI	CCWWGG	1 cut(s)	842
FaeI	CATG	3 cut(s)	100, 515, 913
FalI	AAGNNNNNCTT	2 cut(s)	961, 993
FaqI	GGGAC	2 cut(s)	362, 1050
FatI	CATG	3 cut(s)	96, 511, 909
FauI	CCCGC	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	5 cut(s)	289, 547, 1007, 1037, 1040
FokI	GGATG	2 cut(s)	929, 956
Fsp4HI	GCNGC	5 cut(s)	289, 547, 1007, 1037, 1040
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	5 cut(s)	289, 547, 1007, 1037, 1040
HapII	CCGG	3 cut(s)	158, 391, 801
Hin1II	CATG	3 cut(s)	100, 515, 913
HindIII	AAGCTT	3 cut(s)	202, 475, 524
HinfI	GANTC	4 cut(s)	184, 306, 324, 989
HpaII	CCGG	3 cut(s)	158, 391, 801
HphI	GGTGA	6 cut(s)	25, 179, 421, 728, 745, 831
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	4 cut(s)	183, 196, 320, 416
Hpy188III	TCNNGA	5 cut(s)	41, 439, 482, 512, 1025
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	4 cut(s)	34, 846, 934, 1067
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	3 cut(s)	129, 552, 729
HpyCH4V	TGCA	8 cut(s)	433, 546, 570, 632, 924, 1036, 1080, 1151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	343, 711, 1045
HpyF3I	CTNAG	2 cut(s)	707, 821
HpySE526I	ACGT	3 cut(s)	129, 552, 729
Hsp92II	CATG	3 cut(s)	100, 515, 913
Ksp22I	TGATCA	1 cut(s)	411
LguI	GCTCTTC	2 cut(s)	147, 676
LmnI	GCTCC	3 cut(s)	170, 667, 1171
Lsp1109I	GCAGC	5 cut(s)	275, 558, 1018, 1048, 1051
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	3 cut(s)	129, 552, 729
MaeIII	GTNAC	2 cut(s)	132, 901
MboII	GAAGA	9 cut(s)	63, 134, 365, 527, 663, 734, 792, 894, 1119
MfeI	CAATTG	1 cut(s)	598
MflI	RGATCY	4 cut(s)	43, 100, 682, 1109
MlyI	GAGTC	2 cut(s)	315, 983
MmeI	TCCRAC	4 cut(s)	173, 219, 677, 985
Mph1103I	ATGCAT	1 cut(s)	926
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	998
MspI	CCGG	3 cut(s)	158, 391, 801
MspR9I	CCNGG	5 cut(s)	159, 378, 391, 392, 802
MunI	CAATTG	1 cut(s)	598
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	2 cut(s)	337, 346
MwoI	GCNNNNNNNGC	3 cut(s)	343, 711, 1045
NciI	CCSGG	4 cut(s)	159, 391, 392, 802
NlaIII	CATG	3 cut(s)	100, 515, 913
NlaIV	GGNNCC	3 cut(s)	302, 1141, 1173
NmuCI	GTSAC	1 cut(s)	132
NsiI	ATGCAT	1 cut(s)	926
OliI	CACNNNNGTG	1 cut(s)	486
PagI	TCATGA	1 cut(s)	511
PasI	CCCWGGG	1 cut(s)	377
PciSI	GCTCTTC	2 cut(s)	147, 676
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PctI	GAATGC	1 cut(s)	926
PfeI	GAWTC	2 cut(s)	184, 324
PflMI	CCANNNNNTGG	2 cut(s)	364, 776
PfoI	TCCNGGA	1 cut(s)	157
PkrI	GCNGC	5 cut(s)	290, 548, 1008, 1038, 1041
PleI	GAGTC	2 cut(s)	314, 983
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	2 cut(s)	314, 983
Ppu21I	YACGTR	2 cut(s)	130, 730
PsiI	TTATAA	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	376
PspCI	CACGTG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	3 cut(s)	302, 1141, 1173
PspPI	GGNCC	1 cut(s)	650
PstI	CTGCAG	1 cut(s)	548
PsuI	RGATCY	4 cut(s)	43, 100, 682, 1109
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	2 cut(s)	371, 1087
RsaNI	GTAC	2 cut(s)	370, 1086
RseI	CAYNNNNRTG	1 cut(s)	486
SapI	GCTCTTC	2 cut(s)	147, 676
SatI	GCNGC	5 cut(s)	289, 547, 1007, 1037, 1040
Sau96I	GGNCC	1 cut(s)	650
ScaI	AGTACT	1 cut(s)	1087
SchI	GAGTC	2 cut(s)	315, 983
ScrFI	CCNGG	5 cut(s)	159, 378, 391, 392, 802
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	544
SinI	GGWCC	1 cut(s)	650
SmaI	CCCGGG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	486
SsiI	CCGC	5 cut(s)	218, 346, 407, 491, 714
SspI	AATATT	1 cut(s)	792
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	5 cut(s)	157, 376, 389, 390, 800
StyI	CCWWGG	1 cut(s)	842
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	3 cut(s)	132, 555, 732
TaqI	TCGA	4 cut(s)	309, 738, 758, 956
TaqII	GACCGA	1 cut(s)	638
TatI	WGTACW	2 cut(s)	369, 1085
TfiI	GAWTC	2 cut(s)	184, 324
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	1 cut(s)	132
TseI	GCWGC	5 cut(s)	288, 546, 1006, 1036, 1039
Tsp45I	GTSAC	1 cut(s)	132
TspDTI	ATGAA	6 cut(s)	67, 85, 500, 528, 735, 933
TspGWI	ACGGA	1 cut(s)	462
TspMI	CCCGGG	1 cut(s)	390
TspRI	CASTG	1 cut(s)	715
Van91I	CCANNNNNTGG	2 cut(s)	364, 776
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	3 cut(s)	16, 796, 875
XmaI	CCCGGG	1 cut(s)	390
XspI	CTAG	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	1087
Zsp2I	ATGCAT	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.