AT5G44170

Protein N-lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012406
Physical Location & Seq
Forward (+)
17780206 .. 17781364
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44170.1

Sequence Viewer

Length: 705 bp
ATGAAATTCACAGATTCTCCGGTGATCGATCTGACGGTGAACGGCACAAAACTCTCAATCCAACAAGACAATGGCTCTATGCACGTCGGAACTTCCGTCTGGCCTTGCTCACTAATCCTATCCAAATTCGCTGAACGCTGGTCAACACTAGACTCATCATCATCAACAACATCTCCAAATCCATACGCCGAACTCTTCGATTTCCGTCGCCGTCGAGGAATCGAGCTAGGAACAGGATGCGGAGTCGCCGGTATGGCTTTTTACTTACTAGGTCTAACGGAGATCGTACTCACAGACATAGCACCAGTCATGCCTGCGCTAAAACACAATCTGAAACGGAACAAAACGGCGTTAGGTAAATCTCTAAAAACCTCGATTGTTTATTGGAACAATCGAGATCAGATCTCGGCGTTGAAACCGCCGTTTGATTTGGTTATTGCGGCGGATGTTGTGTATATTGAGGAATCTGTAGGGCAATTAGTGACGGCGATGGAGTTGCTTGTGGCGGATGATGGTGCGGTGTTGTTAGGTTATCAGATTAGGTCACCGGAAGCTGATAAGTTGTTTTGGGAGTTATGCGACATCGTTTTTAAGATTGAGAAAGTTCCTCATGAGCATCTGCATTCTGATTATGCTTATGAAGAAACTGATGTTTATATCTTTAGGAAGAAGGTGAAGAAGAATGAAGCTGAATCAGTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

234

Amino Acids

26.12

Weight (kDa)

5.58

Isoelectric Point (pI)

51.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 15 - 191 1.3e-27 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44170
fragaria_vesca FvH4_6g26750
malus_domestica MD03G1234000.v1.1 MD11G1254400.v1.1
prunus_persica Prupe.4G174700_v2.0.a1
pyrus_communis pycom03g18060
rosa_chinensis RchiOBHm_Chr0c19g0500101
rosa_laevigata RLG00000005980 RLG00000018989 RLG00000035646
rosa_multiflora Rmu_sc0014193.1_g000003
rosa_roxburghii Rroxscaffold_2G00115700 Rroxscaffold_2G00116140
rosa_rugosa Rorug02G0277800
rosa_samantha Rh2AG328900 Rh2BG338800 Rh2CG315800 Rh2DG355500
rosa_wichuraiana Rw2G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 240, 419, 440, 443, 506, 518
AcsI RAATTY 2 cut(s) 5, 125
AfaI GTAC 1 cut(s) 288
AgsI TTSAA 1 cut(s) 415
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 3 cut(s) 226, 554, 689
AluI AGCT 3 cut(s) 226, 554, 689
AoxI GGCC 1 cut(s) 101
ApoI RAATTY 2 cut(s) 5, 125
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 4 cut(s) 34, 49, 537, 685
BccI CCATC 2 cut(s) 484, 506
BceAI ACGGC 5 cut(s) 58, 195, 363, 406, 501
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BfaI CTAG 3 cut(s) 149, 227, 269
BfmI CTRYAG 1 cut(s) 468
BglI GCCNNNNNGGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 402
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
BmgBI CACGTC 1 cut(s) 85
BmsI GCATC 2 cut(s) 227, 625
Bsa29I ATCGAT 1 cut(s) 27
BsaWI WCCGGW 2 cut(s) 19, 547
BsaXI ACNNNNNCTCC 3 cut(s) 31, 157, 187
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 27
BseGI GGATG 3 cut(s) 242, 451, 514
BseNI ACTGG 1 cut(s) 305
BshFI GGCC 1 cut(s) 103
BshVI ATCGAT 1 cut(s) 27
BsiSI CCGG 3 cut(s) 20, 249, 548
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 5 cut(s) 24, 28, 282, 397, 402
BspACI CCGC 6 cut(s) 240, 419, 440, 443, 506, 518
BspANI GGCC 1 cut(s) 103
BspDI ATCGAT 1 cut(s) 27
BspHI TCATGA 2 cut(s) 610, 701
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 248
BssMI GATC 5 cut(s) 24, 28, 282, 397, 402
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 543
BstF5I GGATG 3 cut(s) 242, 451, 514
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 5 cut(s) 27, 31, 285, 400, 405
BstMBI GATC 5 cut(s) 24, 28, 282, 397, 402
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 543
BstSFI CTRYAG 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
Bsu15I ATCGAT 1 cut(s) 27
BsuRI GGCC 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 503
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 3 cut(s) 242, 451, 514
BtsIMutI CAGTG 1 cut(s) 702
Cac8I GCNNGC 1 cut(s) 315
CciI TCATGA 2 cut(s) 610, 701
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 248
ClaI ATCGAT 1 cut(s) 27
Csp6I GTAC 1 cut(s) 287
CviAII CATG 3 cut(s) 310, 611, 702
CviJI RGCY 6 cut(s) 75, 103, 226, 257, 554, 689
CviKI_1 RGCY 6 cut(s) 75, 103, 226, 257, 554, 689
CviQI GTAC 1 cut(s) 287
DpnI GATC 5 cut(s) 26, 30, 284, 399, 404
DpnII GATC 5 cut(s) 24, 28, 282, 397, 402
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 2 cut(s) 458, 521
Eco91I GGTNACC 1 cut(s) 543
EcoO65I GGTNACC 1 cut(s) 543
FaeI CATG 3 cut(s) 313, 614, 705
FatI CATG 3 cut(s) 309, 610, 701
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 3 cut(s) 249, 458, 521
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 3 cut(s) 149, 227, 269
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 441
HaeIII GGCC 1 cut(s) 103
HapII CCGG 3 cut(s) 20, 249, 548
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 313, 614, 705
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 6 cut(s) 14, 152, 219, 243, 464, 692
HpaII CCGG 3 cut(s) 20, 249, 548
HphI GGTGA 4 cut(s) 34, 49, 537, 685
Hpy166II GTNNAC 2 cut(s) 40, 144
Hpy188I TCNGA 6 cut(s) 33, 89, 333, 402, 537, 628
Hpy188III TCNNGA 3 cut(s) 395, 611, 702
Hpy8I GTNNAC 2 cut(s) 40, 144
Hpy99I CGWCG 3 cut(s) 89, 210, 216
HpyAV CCTTC 1 cut(s) 664
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 82, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 3 cut(s) 313, 614, 705
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 5 cut(s) 24, 28, 282, 397, 402
LpnPI CCDG 8 cut(s) 33, 85, 124, 219, 262, 318, 327, 561
LweI GCATC 2 cut(s) 227, 625
MaeI CTAG 3 cut(s) 149, 227, 269
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 481, 543
MalI GATC 5 cut(s) 26, 30, 284, 399, 404
MboI GATC 5 cut(s) 24, 28, 282, 397, 402
MboII GAAGA 5 cut(s) 187, 653, 679, 688, 691
MflI RGATCY 1 cut(s) 402
MluCI AATT 3 cut(s) 5, 125, 476
MlyI GAGTC 2 cut(s) 146, 252
MmeI TCCRAC 2 cut(s) 67, 85
MnlI CCTC 4 cut(s) 209, 382, 454, 618
MseI TTAA 1 cut(s) 591
MspI CCGG 3 cut(s) 20, 249, 548
Mva1269I GAATGC 1 cut(s) 622
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 5 cut(s) 24, 28, 282, 397, 402
NlaIII CATG 3 cut(s) 313, 614, 705
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 2 cut(s) 481, 543
PagI TCATGA 2 cut(s) 610, 701
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 4 cut(s) 14, 219, 464, 692
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 2 cut(s) 146, 251
PpsI GAGTC 2 cut(s) 146, 251
PspEI GGTNACC 1 cut(s) 543
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 5 cut(s) 24, 28, 282, 397, 402
SchI GAGTC 2 cut(s) 146, 252
SfaNI GCATC 2 cut(s) 227, 625
SfcI CTRYAG 1 cut(s) 468
Sse9I AATT 3 cut(s) 5, 125, 476
SsiI CCGC 6 cut(s) 240, 419, 440, 443, 506, 518
SspMI CTAG 3 cut(s) 149, 227, 269
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 87
TaqI TCGA 6 cut(s) 27, 198, 214, 222, 374, 394
TasI AATT 3 cut(s) 5, 125, 476
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 4 cut(s) 14, 219, 464, 692
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 1 cut(s) 702
TseFI GTSAC 2 cut(s) 481, 543
Tsp45I GTSAC 2 cut(s) 481, 543
TspDTI ATGAA 3 cut(s) 17, 654, 699
TspGWI ACGGA 4 cut(s) 85, 194, 293, 352
TspRI CASTG 1 cut(s) 702
XapI RAATTY 2 cut(s) 5, 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
XspI CTAG 3 cut(s) 149, 227, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.