Rmu_sc0014193.1_g000003

Methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014193.1
OG0012406
Physical Location & Seq
Reverse (-)
3502 .. 5080
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014193.1_g000003.1.cds

Sequence Viewer

Length: 825 bp
atgtatggttctggccctatcatcgccagaaaaaggttggagcaacgccggcgcccgacctccacttttcgacccttgatgtgccatgcacggtggtttttgggttgtgtgaggggtcaggaatctaaacaaatcggcggcaaaggtatgaagttcacagactcgccggtgatagagctccccgtccgcgacgccgtcctctccttccaacaagacaacggctccctccatgtcggcaccaccgtctggccctgctccttagtcctcgtcaagttcgccgagcgctgggccccaccaagcaaccaccaaccccaaaacccctattccgacctcctcgacttccgcgccaagcgcgccgtcgagctcggcgccggatgcggagtcgccgccatggggctttacctcctcggcctgaccgacgtcgtcatcaccgacatccccgccgtgatgccggcgctgaagcgaaacctcaagcgcaacaaaccggtcctcggcaagaacctcaagcacgcgattctccactggaacaaggcggaccagatcgccgcgctcagccctccgtacgacgtcgttgtggcgaccgatgtggtttatattgaggagaccgtaggacccttgatctccaccatggaggcgatggtgaaggacgacggcgtcgttttgcttgggtaccaattgaggtcgccggaggcgcataagctcttctgggaaatgtgtgaaggggtttttgtgatcgagaaagttccgcaccaggatttgcacccggattatgcctatgaggagaccgatgtctatatcttgcgcaagaagaaaaaggaaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

274

Amino Acids

30.76

Weight (kDa)

8.86

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44170
fragaria_vesca FvH4_6g26750
malus_domestica MD03G1234000.v1.1 MD11G1254400.v1.1
prunus_persica Prupe.4G174700_v2.0.a1
pyrus_communis pycom03g18060
rosa_chinensis RchiOBHm_Chr0c19g0500101
rosa_laevigata RLG00000005980 RLG00000018989 RLG00000035646
rosa_multiflora Rmu_sc0014193.1_g000003
rosa_roxburghii Rroxscaffold_2G00115700 Rroxscaffold_2G00116140
rosa_rugosa Rorug02G0277800
rosa_samantha Rh2AG328900 Rh2BG338800 Rh2CG315800 Rh2DG355500
rosa_wichuraiana Rw2G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
AatII GACGTC 2 cut(s) 423, 570
Acc16I TGCGCA 1 cut(s) 803
Acc65I GGTACC 1 cut(s) 669
AccB1I GGYRCC 4 cut(s) 51, 236, 368, 669
AccB7I CCANNNNNTGG 1 cut(s) 246
AccII CGCG 5 cut(s) 189, 345, 354, 512, 548
AciI CCGC 9 cut(s) 138, 187, 343, 378, 387, 441, 533, 546, 746
AcuI CTGAAG 1 cut(s) 479
AcyI GRCGYC 6 cut(s) 52, 192, 369, 420, 567, 654
AfaI GTAC 2 cut(s) 563, 671
AfeI AGCGCT 1 cut(s) 284
AfiI CCNNNNNNNGG 5 cut(s) 33, 246, 285, 393, 491
AgeI ACCGGT 1 cut(s) 484
AjnI CCWGG 1 cut(s) 750
AluBI AGCT 3 cut(s) 178, 364, 700
AluI AGCT 3 cut(s) 178, 364, 700
Alw21I GWGCWC 2 cut(s) 180, 366
Alw26I GTCTC 2 cut(s) 596, 776
Aor51HI AGCGCT 1 cut(s) 284
AoxI GGCC 4 cut(s) 13, 248, 288, 409
ApaI GGGCCC 1 cut(s) 292
AsiGI ACCGGT 1 cut(s) 484
Asp718I GGTACC 1 cut(s) 669
AspS9I GGNCC 7 cut(s) 14, 249, 288, 289, 487, 535, 611
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 3 cut(s) 181, 421, 652
AvaII GGWCC 3 cut(s) 487, 535, 611
BaeGI GKGCMC 1 cut(s) 292
BanI GGYRCC 4 cut(s) 51, 236, 368, 669
BanII GRGCYC 3 cut(s) 180, 292, 366
Bbv12I GWGCWC 2 cut(s) 180, 366
BccI CCATC 1 cut(s) 631
BceAI ACGGC 5 cut(s) 179, 235, 341, 428, 667
BciT130I CCWGG 1 cut(s) 752
BcnI CCSGG 1 cut(s) 764
BcoDI GTCTC 2 cut(s) 596, 776
BfoI RGCGCY 4 cut(s) 55, 286, 372, 458
BisI GCNGC 3 cut(s) 139, 387, 546
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 3 cut(s) 140, 388, 547
Bme1390I CCNGG 2 cut(s) 752, 764
Bme18I GGWCC 3 cut(s) 487, 535, 611
BmgT120I GGNCC 7 cut(s) 14, 249, 288, 289, 487, 535, 611
BmiI GGNNCC 8 cut(s) 53, 223, 238, 290, 291, 370, 613, 671
BmrFI CCNGG 2 cut(s) 752, 764
BmsI GCATC 2 cut(s) 365, 438
BoxI GACNNNNGTC 2 cut(s) 419, 788
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 455, 488
BpuMI CCSGG 1 cut(s) 764
BsaHI GRCGYC 6 cut(s) 52, 192, 369, 420, 567, 654
BsaI GGTCTC 2 cut(s) 596, 776
BsaJI CCNNGG 4 cut(s) 390, 406, 490, 627
BsaWI WCCGGW 1 cut(s) 484
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 246, 285, 393, 491
Bse118I RCCGGY 4 cut(s) 48, 166, 451, 484
Bse1I ACTGG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 752
BseDI CCNNGG 4 cut(s) 390, 406, 490, 627
BseGI GGATG 2 cut(s) 380, 435
BseLI CCNNNNNNNGG 5 cut(s) 33, 246, 285, 393, 491
BseMII CTCAG 1 cut(s) 565
BseNI ACTGG 1 cut(s) 527
BsePI GCGCGC 1 cut(s) 352
BseRI GAGGAG 4 cut(s) 323, 395, 614, 794
BseSI GKGCMC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 285
Bsh1236I CGCG 5 cut(s) 189, 345, 354, 512, 548
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 4 cut(s) 15, 250, 290, 411
BshNI GGYRCC 4 cut(s) 51, 236, 368, 669
BshTI ACCGGT 1 cut(s) 484
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 2 cut(s) 180, 366
BsiSI CCGG 7 cut(s) 49, 167, 372, 452, 485, 686, 764
BsiWI CGTACG 1 cut(s) 561
BslI CCNNNNNNNGG 5 cut(s) 33, 246, 285, 393, 491
BsmAI GTCTC 2 cut(s) 596, 776
BsnI GGCC 4 cut(s) 15, 250, 290, 411
Bso31I GGTCTC 2 cut(s) 596, 776
Bsp120I GGGCCC 1 cut(s) 288
Bsp1286I GDGCHC 3 cut(s) 180, 292, 366
Bsp143I GATC 3 cut(s) 540, 618, 732
Bsp1720I GCTNAGC 1 cut(s) 551
Bsp19I CCATGG 2 cut(s) 390, 627
BspACI CCGC 9 cut(s) 138, 187, 343, 378, 387, 441, 533, 546, 746
BspANI GGCC 4 cut(s) 15, 250, 290, 411
BspCNI CTCAG 1 cut(s) 564
BspFNI CGCG 5 cut(s) 189, 345, 354, 512, 548
BspLI GGNNCC 8 cut(s) 53, 223, 238, 290, 291, 370, 613, 671
BspQI GCTCTTC 1 cut(s) 707
BspT107I GGYRCC 4 cut(s) 51, 236, 368, 669
BspTNI GGTCTC 2 cut(s) 596, 776
BsrFI RCCGGY 4 cut(s) 48, 166, 451, 484
BsrI ACTGG 1 cut(s) 527
BssAI RCCGGY 4 cut(s) 48, 166, 451, 484
BssECI CCNNGG 4 cut(s) 390, 406, 490, 627
BssHII GCGCGC 1 cut(s) 352
BssMI GATC 3 cut(s) 540, 618, 732
BssNI GRCGYC 6 cut(s) 52, 192, 369, 420, 567, 654
BssT1I CCWWGG 2 cut(s) 390, 627
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 3 cut(s) 93, 244, 607
Bst6I CTCTTC 1 cut(s) 707
BstACI GRCGYC 6 cut(s) 52, 192, 369, 420, 567, 654
BstC8I GCNNGC 4 cut(s) 50, 354, 453, 510
BstDEI CTNAG 2 cut(s) 259, 551
BstDSI CCRYGG 2 cut(s) 390, 627
BstF5I GGATG 2 cut(s) 380, 435
BstFNI CGCG 5 cut(s) 189, 345, 354, 512, 548
BstH2I RGCGCY 4 cut(s) 55, 286, 372, 458
BstKTI GATC 3 cut(s) 543, 621, 735
BstMAI GTCTC 2 cut(s) 596, 776
BstMBI GATC 3 cut(s) 540, 618, 732
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 5 cut(s) 49, 351, 353, 375, 691
BstNI CCWGG 1 cut(s) 752
BstPAI GACNNNNGTC 2 cut(s) 419, 788
BstSCI CCNGG 2 cut(s) 750, 762
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 5 cut(s) 189, 345, 354, 512, 548
BsuRI GGCC 4 cut(s) 15, 250, 290, 411
BtgI CCRYGG 2 cut(s) 390, 627
BtgZI GCGATG 2 cut(s) 7, 650
BtsCI GGATG 2 cut(s) 380, 435
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 4 cut(s) 50, 354, 453, 510
Cfr10I RCCGGY 4 cut(s) 48, 166, 451, 484
Cfr13I GGNCC 7 cut(s) 14, 249, 288, 289, 487, 535, 611
CseI GACGC 2 cut(s) 200, 643
Csp6I GTAC 2 cut(s) 562, 670
CspAI ACCGGT 1 cut(s) 484
CviAII CATG 4 cut(s) 86, 230, 391, 628
CviQI GTAC 2 cut(s) 562, 670
DdeI CTNAG 2 cut(s) 259, 551
DinI GGCGCC 2 cut(s) 53, 370
DpnI GATC 3 cut(s) 542, 620, 734
DpnII GATC 3 cut(s) 540, 618, 732
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
EciI GGCGGA 1 cut(s) 548
Ecl136II GAGCTC 2 cut(s) 178, 364
Eco130I CCWWGG 2 cut(s) 390, 627
Eco24I GRGCYC 3 cut(s) 180, 292, 366
Eco31I GGTCTC 2 cut(s) 596, 776
Eco47I GGWCC 3 cut(s) 487, 535, 611
Eco47III AGCGCT 1 cut(s) 284
Eco53kI GAGCTC 2 cut(s) 178, 364
Eco57I CTGAAG 1 cut(s) 479
EcoICRI GAGCTC 2 cut(s) 178, 364
EcoO109I RGGNCCY 2 cut(s) 289, 611
EcoRII CCWGG 1 cut(s) 750
EcoT14I CCWWGG 2 cut(s) 390, 627
EcoT38I GRGCYC 3 cut(s) 180, 292, 366
EgeI GGCGCC 2 cut(s) 53, 370
EheI GGCGCC 2 cut(s) 53, 370
ErhI CCWWGG 2 cut(s) 390, 627
FaeI CATG 4 cut(s) 89, 233, 394, 631
FatI CATG 4 cut(s) 85, 229, 390, 627
FauI CCCGC 1 cut(s) 448
Fnu4HI GCNGC 3 cut(s) 139, 387, 546
FokI GGATG 2 cut(s) 387, 422
FriOI GRGCYC 3 cut(s) 180, 292, 366
Fsp4HI GCNGC 3 cut(s) 139, 387, 546
FspI TGCGCA 1 cut(s) 803
GluI GCNGC 3 cut(s) 139, 387, 546
GsaI CCCAGC 1 cut(s) 289
HaeII RGCGCY 4 cut(s) 55, 286, 372, 458
HaeIII GGCC 4 cut(s) 15, 250, 290, 411
HapII CCGG 7 cut(s) 49, 167, 372, 452, 485, 686, 764
HgaI GACGC 2 cut(s) 200, 643
Hin1I GRCGYC 6 cut(s) 52, 192, 369, 420, 567, 654
Hin1II CATG 4 cut(s) 89, 233, 394, 631
HinfI GANTC 4 cut(s) 122, 161, 381, 514
HpaII CCGG 7 cut(s) 49, 167, 372, 452, 485, 686, 764
HphI GGTGA 3 cut(s) 181, 421, 652
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 2 cut(s) 119, 736
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 8 cut(s) 194, 362, 422, 425, 569, 572, 653, 659
HpyAV CCTTC 3 cut(s) 214, 637, 713
HpyCH4III ACNGT 3 cut(s) 93, 244, 607
HpyCH4IV ACGT 2 cut(s) 420, 567
HpyCH4V TGCA 2 cut(s) 89, 760
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 351, 353, 375, 691
HpyF3I CTNAG 2 cut(s) 259, 551
HpySE526I ACGT 2 cut(s) 420, 567
Hsp92I GRCGYC 6 cut(s) 52, 192, 369, 420, 567, 654
Hsp92II CATG 4 cut(s) 89, 233, 394, 631
KasI GGCGCC 2 cut(s) 51, 368
KpnI GGTACC 1 cut(s) 673
KroI GCCGGC 2 cut(s) 48, 451
KroNI GCCGGC 2 cut(s) 50, 453
Kzo9I GATC 3 cut(s) 540, 618, 732
LguI GCTCTTC 1 cut(s) 707
LmnI GCTCC 4 cut(s) 40, 183, 227, 260
LweI GCATC 2 cut(s) 365, 438
MaeII ACGT 2 cut(s) 420, 567
MalI GATC 3 cut(s) 542, 620, 734
MboI GATC 3 cut(s) 540, 618, 732
MboII GAAGA 2 cut(s) 694, 820
MfeI CAATTG 1 cut(s) 674
MhlI GDGCHC 3 cut(s) 180, 292, 366
MluCI AATT 1 cut(s) 674
Mly113I GGCGCC 2 cut(s) 52, 369
MlyI GAGTC 2 cut(s) 155, 390
MmeI TCCRAC 3 cut(s) 18, 232, 351
MreI CGCCGGCG 1 cut(s) 48
MroNI GCCGGC 2 cut(s) 48, 451
MspI CCGG 7 cut(s) 49, 167, 372, 452, 485, 686, 764
MspR9I CCNGG 2 cut(s) 752, 764
MunI CAATTG 1 cut(s) 674
MvaI CCWGG 1 cut(s) 752
MvnI CGCG 5 cut(s) 189, 345, 354, 512, 548
MwoI GCNNNNNNNGC 5 cut(s) 49, 351, 353, 375, 691
NaeI GCCGGC 2 cut(s) 50, 453
NarI GGCGCC 2 cut(s) 52, 369
NciI CCSGG 1 cut(s) 764
NcoI CCATGG 2 cut(s) 390, 627
NdeII GATC 3 cut(s) 540, 618, 732
NgoMIV GCCGGC 2 cut(s) 48, 451
NlaIII CATG 4 cut(s) 89, 233, 394, 631
NlaIV GGNNCC 8 cut(s) 53, 223, 238, 290, 291, 370, 613, 671
NmeAIII GCCGAG 4 cut(s) 304, 345, 387, 471
NsbI TGCGCA 1 cut(s) 803
PauI GCGCGC 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 707
PcsI WCGNNNNNNNCGW 4 cut(s) 240, 414, 429, 654
PdiI GCCGGC 2 cut(s) 50, 453
PfeI GAWTC 2 cut(s) 122, 514
Pfl23II CGTACG 1 cut(s) 561
PflFI GACNNNGTC 3 cut(s) 194, 422, 653
PflMI CCANNNNNTGG 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 484
PkrI GCNGC 3 cut(s) 140, 388, 547
PleI GAGTC 2 cut(s) 155, 389
PluTI GGCGCC 2 cut(s) 55, 372
PpsI GAGTC 2 cut(s) 155, 389
PpuMI RGGWCCY 1 cut(s) 611
PshAI GACNNNNGTC 2 cut(s) 419, 788
Psp124BI GAGCTC 2 cut(s) 180, 366
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 1 cut(s) 750
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 1 cut(s) 750
PspLI CGTACG 1 cut(s) 561
PspN4I GGNNCC 8 cut(s) 53, 223, 238, 290, 291, 370, 613, 671
PspOMI GGGCCC 1 cut(s) 288
PspPI GGNCC 7 cut(s) 14, 249, 288, 289, 487, 535, 611
PspPPI RGGWCCY 1 cut(s) 611
PsyI GACNNNGTC 3 cut(s) 194, 422, 653
PteI GCGCGC 1 cut(s) 352
RsaI GTAC 2 cut(s) 563, 671
RsaNI GTAC 2 cut(s) 562, 670
SacI GAGCTC 2 cut(s) 180, 366
SapI GCTCTTC 1 cut(s) 707
SatI GCNGC 3 cut(s) 139, 387, 546
Sau3AI GATC 3 cut(s) 540, 618, 732
Sau96I GGNCC 7 cut(s) 14, 249, 288, 289, 487, 535, 611
SchI GAGTC 2 cut(s) 155, 390
ScrFI CCNGG 2 cut(s) 752, 764
SduI GDGCHC 3 cut(s) 180, 292, 366
SfaNI GCATC 2 cut(s) 365, 438
SfoI GGCGCC 2 cut(s) 53, 370
SgrAI CRCCGGYG 2 cut(s) 48, 166
SinI GGWCC 3 cut(s) 487, 535, 611
SmlI CTYRAG 2 cut(s) 470, 503
SmoI CTYRAG 2 cut(s) 470, 503
Sse9I AATT 1 cut(s) 674
SsiI CCGC 9 cut(s) 138, 187, 343, 378, 387, 441, 533, 546, 746
SspDI GGCGCC 2 cut(s) 51, 368
SstI GAGCTC 2 cut(s) 180, 366
StyD4I CCNGG 2 cut(s) 750, 762
StyI CCWWGG 2 cut(s) 390, 627
TaaI ACNGT 3 cut(s) 93, 244, 607
TaiI ACGT 2 cut(s) 423, 570
TaqI TCGA 4 cut(s) 70, 336, 360, 735
TaqII GACCGA 3 cut(s) 431, 596, 800
TasI AATT 1 cut(s) 674
TauI GCSGC 3 cut(s) 141, 389, 548
TfiI GAWTC 2 cut(s) 122, 514
TscAI CASTG 1 cut(s) 527
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 549
TspRI CASTG 1 cut(s) 527
Tth111I GACNNNGTC 3 cut(s) 194, 422, 653
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 3 cut(s) 487, 535, 611
XcmI CCANNNNNNNNNTGG 2 cut(s) 34, 634
ZraI GACGTC 2 cut(s) 421, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.