RLG00000005980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012406
Physical Location & Seq
Forward (+)
3270305 .. 3271323
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005980

Sequence Viewer

Length: 633 bp
ATGTCAGACCTTCGTTCCAGTGGGGAAGCACTTATTGAAAAAGCAATCCTTGCCCATCTTTTTTCTAACCACAGACATTTCTTCTGTTGCTCCAAGAAGTTGAAGTTTCCTTCCGGTCATCAACAATGGCGGTTCGTCAAGGCCTCCATTCGGGGTTGGAAATGTCAGACCTCTGTTCCCGATCTCTCTATTTCTTCATTCTTCTATTCCTCCAAGAAGCTTTCTTTCGATCATCAATGGCAGTTCGTAAAGTCAGTTAAGCGTTGGAAATGTCAGACCTTCGTTCCCGGTGGGGAGATCGGGAACGGAGAAATTTTAATCTATGCCTCCGGCGACTCTGCTAGCCCACCAGTGCGCCTTCGCCGTCAATGTCGGCACCACCGTCTGGCTTTGCTCTCATCAAGTCGTCAAGTTAGTCGAGTGTTGAGACCCACCCCCAAAACCCCTACTCCAACCTCATTGATTTCCCAGCCAAACGCGACGACGAGCTCGGCGCCGGATGCGGAGTCGCTACCATTGGGCTTCATCGACATCTCCGCCCCCATGCCGGCGCTGAAGCGAAACCTTAGACGCAACAAACTGGTTCATAGCAAGAACTTCAAGCACTCCGGTAGGGAAGTAACAAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.68

Weight (kDa)

10.63

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44170
fragaria_vesca FvH4_6g26750
malus_domestica MD03G1234000.v1.1 MD11G1254400.v1.1
prunus_persica Prupe.4G174700_v2.0.a1
pyrus_communis pycom03g18060
rosa_chinensis RchiOBHm_Chr0c19g0500101
rosa_laevigata RLG00000005980 RLG00000018989 RLG00000035646
rosa_multiflora Rmu_sc0014193.1_g000003
rosa_roxburghii Rroxscaffold_2G00115700 Rroxscaffold_2G00116140
rosa_rugosa Rorug02G0277800
rosa_samantha Rh2AG328900 Rh2BG338800 Rh2CG315800 Rh2DG355500
rosa_wichuraiana Rw2G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 375, 493
AccB7I CCANNNNNTGG 1 cut(s) 385
AccII CGCG 1 cut(s) 479
AciI CCGC 3 cut(s) 130, 503, 537
AcsI RAATTY 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 575
AcyI GRCGYC 1 cut(s) 494
AfiI CCNNNNNNNGG 3 cut(s) 150, 385, 547
AgsI TTSAA 3 cut(s) 38, 103, 601
AluBI AGCT 2 cut(s) 220, 489
AluI AGCT 2 cut(s) 220, 489
Alw21I GWGCWC 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 421
AoxI GGCC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 312
AspLEI GCGC 3 cut(s) 357, 496, 553
AsuC2I CCSGG 1 cut(s) 288
AsuNHI GCTAGC 1 cut(s) 341
BanI GGYRCC 2 cut(s) 375, 493
BanII GRGCYC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 491
BccI CCATC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 348
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 342
BfoI RGCGCY 2 cut(s) 497, 554
Bme1390I CCNGG 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 377, 495
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 490
BmtI GCTAGC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 421
BsaWI WCCGGW 2 cut(s) 113, 608
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bsc4I CCNNNNNNNGG 3 cut(s) 150, 385, 547
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 3 cut(s) 18, 350, 585
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 3 cut(s) 150, 385, 547
BseNI ACTGG 3 cut(s) 18, 350, 585
BseYI CCCAGC 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 2 cut(s) 375, 493
BsiHKAI GWGCWC 1 cut(s) 491
BsiSI CCGG 6 cut(s) 114, 288, 330, 497, 548, 609
BslI CCNNNNNNNGG 3 cut(s) 150, 385, 547
BsmAI GTCTC 1 cut(s) 421
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 491
Bsp143I GATC 3 cut(s) 181, 229, 297
BspACI CCGC 3 cut(s) 130, 503, 537
BspANI GGCC 1 cut(s) 143
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 2 cut(s) 377, 495
BspOI GCTAGC 1 cut(s) 345
BspT107I GGYRCC 2 cut(s) 375, 493
BspTNI GGTCTC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 3 cut(s) 18, 350, 585
BssAI RCCGGY 1 cut(s) 547
BssMI GATC 3 cut(s) 181, 229, 297
BssNI GRCGYC 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 494
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 343, 549
BstDEI CTNAG 1 cut(s) 566
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 1 cut(s) 479
BstH2I RGCGCY 2 cut(s) 497, 554
BstHHI GCGC 3 cut(s) 357, 496, 553
BstKTI GATC 3 cut(s) 184, 232, 300
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 3 cut(s) 181, 229, 297
BstMWI GCNNNNNNNGC 2 cut(s) 50, 500
BstSCI CCNGG 1 cut(s) 286
BstUI CGCG 1 cut(s) 479
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 2 cut(s) 25, 357
Cac8I GCNNGC 2 cut(s) 343, 549
CfoI GCGC 3 cut(s) 357, 496, 553
Cfr10I RCCGGY 1 cut(s) 547
CseI GACGC 1 cut(s) 579
CviAII CATG 1 cut(s) 544
CviJI RGCY 7 cut(s) 143, 220, 345, 389, 472, 489, 522
CviKI_1 RGCY 7 cut(s) 143, 220, 345, 389, 472, 489, 522
DdeI CTNAG 1 cut(s) 566
DinI GGCGCC 1 cut(s) 495
DpnI GATC 3 cut(s) 183, 231, 299
DpnII GATC 3 cut(s) 181, 229, 297
EciI GGCGGA 1 cut(s) 526
Ecl136II GAGCTC 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 489
Eco57I CTGAAG 1 cut(s) 575
EcoICRI GAGCTC 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 491
EgeI GGCGCC 1 cut(s) 495
EheI GGCGCC 1 cut(s) 495
FaeI CATG 1 cut(s) 547
FaiI YATR 3 cut(s) 324, 545, 588
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FatI CATG 1 cut(s) 543
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 491
FspBI CTAG 1 cut(s) 342
GlaI GCGC 3 cut(s) 356, 495, 552
GsaI CCCAGC 1 cut(s) 472
HaeII RGCGCY 2 cut(s) 497, 554
HaeIII GGCC 1 cut(s) 143
HapII CCGG 6 cut(s) 114, 288, 330, 497, 548, 609
HgaI GACGC 1 cut(s) 579
HhaI GCGC 3 cut(s) 357, 496, 553
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 3 cut(s) 355, 494, 551
HinP1I GCGC 3 cut(s) 355, 494, 551
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 2 cut(s) 335, 506
HpaII CCGG 6 cut(s) 114, 288, 330, 497, 548, 609
Hpy188I TCNGA 4 cut(s) 7, 168, 276, 632
Hpy188III TCNNGA 2 cut(s) 179, 301
Hpy99I CGWCG 2 cut(s) 484, 487
HpyAV CCTTC 4 cut(s) 20, 120, 289, 368
HpyCH4III ACNGT 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 500
HpyF3I CTNAG 1 cut(s) 566
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 3 cut(s) 355, 494, 551
KasI GGCGCC 1 cut(s) 493
KroI GCCGGC 1 cut(s) 547
KroNI GCCGGC 1 cut(s) 549
Kzo9I GATC 3 cut(s) 181, 229, 297
LmnI GCTCC 1 cut(s) 95
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 619
MalI GATC 3 cut(s) 183, 231, 299
MboI GATC 3 cut(s) 181, 229, 297
MboII GAAGA 3 cut(s) 73, 186, 193
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 1 cut(s) 312
Mly113I GGCGCC 1 cut(s) 494
MlyI GAGTC 2 cut(s) 329, 515
MmeI TCCRAC 3 cut(s) 137, 245, 476
MnlI CCTC 5 cut(s) 154, 181, 220, 337, 466
MroNI GCCGGC 1 cut(s) 547
MseI TTAA 2 cut(s) 258, 317
MspI CCGG 6 cut(s) 114, 288, 330, 497, 548, 609
MspR9I CCNGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 2 cut(s) 50, 500
NaeI GCCGGC 1 cut(s) 549
NarI GGCGCC 1 cut(s) 494
NciI CCSGG 1 cut(s) 288
NdeII GATC 3 cut(s) 181, 229, 297
NgoMIV GCCGGC 1 cut(s) 547
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 2 cut(s) 377, 495
NmeAIII GCCGAG 1 cut(s) 470
PceI AGGCCT 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PdiI GCCGGC 1 cut(s) 549
PflMI CCANNNNNTGG 1 cut(s) 385
PleI GAGTC 2 cut(s) 329, 514
PluTI GGCGCC 1 cut(s) 497
PpsI GAGTC 2 cut(s) 329, 514
Psp124BI GAGCTC 1 cut(s) 491
PspFI CCCAGC 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 377, 495
SacI GAGCTC 1 cut(s) 491
SaqAI TTAA 2 cut(s) 258, 317
Sau3AI GATC 3 cut(s) 181, 229, 297
SchI GAGTC 2 cut(s) 329, 515
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 491
SetI ASST 8 cut(s) 12, 173, 222, 281, 458, 491, 567, 630
SfaNI GCATC 1 cut(s) 490
SfoI GGCGCC 1 cut(s) 495
Sse9I AATT 1 cut(s) 312
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 3 cut(s) 130, 503, 537
SspDI GGCGCC 1 cut(s) 493
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 491
StuI AGGCCT 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 383
TaqI TCGA 3 cut(s) 228, 418, 528
TasI AATT 1 cut(s) 312
Tru1I TTAA 2 cut(s) 258, 317
Tru9I TTAA 2 cut(s) 258, 317
TscAI CASTG 2 cut(s) 25, 357
TspDTI ATGAA 3 cut(s) 186, 514, 575
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 2 cut(s) 25, 357
Van91I CCANNNNNTGG 1 cut(s) 385
XapI RAATTY 1 cut(s) 312
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.