RLG00000035646

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012406
Physical Location & Seq
Forward (+)
69686209 .. 69686660
452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035646

Sequence Viewer

Length: 342 bp
ATGTCGGCACCACTGTCTGCCTTTGCTCTCGTCAACTCGTCAAGTTCGCCGAGCACTGGGCTCCACCCATCAACCACCCCCAAAACCCCTACTCCGACCTCTTCGATTTCCCAGCCAAATGTGACGTCGAGCTCGATGCCGGATACGGAGTCGCCGCCATTGGGCTTTACCTCCATGGCCTGCGTCGTCATCACCGAAATCTCCGCCGCCATGCCGACATTGAAGCGAAACCTCATGCGCAACAAACTGGTTCGCAGCAAGAACTTCAATCACACTGATCGGGAAGCAACAAAGAGGAAAGGAATTACTACCAACACTATTGATAAAATGGTTGAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.04

Weight (kDa)

9.89

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44170
fragaria_vesca FvH4_6g26750
malus_domestica MD03G1234000.v1.1 MD11G1254400.v1.1
prunus_persica Prupe.4G174700_v2.0.a1
pyrus_communis pycom03g18060
rosa_chinensis RchiOBHm_Chr0c19g0500101
rosa_laevigata RLG00000005980 RLG00000018989 RLG00000035646
rosa_multiflora Rmu_sc0014193.1_g000003
rosa_roxburghii Rroxscaffold_2G00115700 Rroxscaffold_2G00116140
rosa_rugosa Rorug02G0277800
rosa_samantha Rh2AG328900 Rh2BG338800 Rh2CG315800 Rh2DG355500
rosa_wichuraiana Rw2G026660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 128
Acc16I TGCGCA 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 7
AciI CCGC 3 cut(s) 155, 204, 207
AcyI GRCGYC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 56, 161
AgsI TTSAA 2 cut(s) 223, 268
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw21I GWGCWC 2 cut(s) 56, 134
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 255
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspLEI GCGC 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 184
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 2 cut(s) 63, 134
Bbv12I GWGCWC 2 cut(s) 56, 134
BbvI GCAGC 1 cut(s) 267
BccI CCATC 1 cut(s) 76
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciVI GTATCC 1 cut(s) 136
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 3 cut(s) 155, 207, 256
BlsI GCNGC 3 cut(s) 156, 208, 257
BmiI GGNNCC 2 cut(s) 9, 62
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 161
Bse1I ACTGG 2 cut(s) 61, 252
BseDI CCNNGG 1 cut(s) 174
BseLI CCNNNNNNNGG 2 cut(s) 56, 161
BseNI ACTGG 2 cut(s) 61, 252
BseXI GCAGC 1 cut(s) 267
BseYI CCCAGC 1 cut(s) 111
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 2 cut(s) 56, 134
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 56, 161
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 56, 63, 134
Bsp143I GATC 1 cut(s) 277
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 3 cut(s) 155, 204, 207
BspANI GGCC 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 9, 62
BspT107I GGYRCC 1 cut(s) 7
BsrI ACTGG 2 cut(s) 61, 252
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 277
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 106
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 267
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 174
BtsIMutI CAGTG 3 cut(s) 11, 54, 273
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 240
CseI GACGC 1 cut(s) 172
CviAII CATG 3 cut(s) 175, 211, 235
CviJI RGCY 5 cut(s) 61, 115, 132, 165, 179
CviKI_1 RGCY 5 cut(s) 61, 115, 132, 165, 179
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 2 cut(s) 63, 134
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 2 cut(s) 63, 134
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 178, 214, 238
FaiI YATR 4 cut(s) 176, 212, 236, 340
FatI CATG 3 cut(s) 174, 210, 234
Fnu4HI GCNGC 3 cut(s) 155, 207, 256
FriOI GRGCYC 2 cut(s) 63, 134
Fsp4HI GCNGC 3 cut(s) 155, 207, 256
FspI TGCGCA 1 cut(s) 239
GlaI GCGC 1 cut(s) 239
GluI GCNGC 3 cut(s) 155, 207, 256
GsaI CCCAGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 172
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 3 cut(s) 178, 214, 238
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 1 cut(s) 149
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 2 cut(s) 130, 188
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 3 cut(s) 178, 214, 238
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 5 cut(s) 42, 125, 153, 193, 233
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 1 cut(s) 126
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 93
MhlI GDGCHC 3 cut(s) 56, 63, 134
MluCI AATT 1 cut(s) 303
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 5 cut(s) 109, 181, 242, 288, 328
MspI CCGG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 174
NdeII GATC 1 cut(s) 277
NlaIII CATG 3 cut(s) 178, 214, 238
NlaIV GGNNCC 2 cut(s) 9, 62
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 121
NsbI TGCGCA 1 cut(s) 239
PcsI WCGNNNNNNNCGW 2 cut(s) 131, 192
PkrI GCNGC 3 cut(s) 156, 208, 257
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 9, 62
SacI GAGCTC 1 cut(s) 134
SatI GCNGC 3 cut(s) 155, 207, 256
Sau3AI GATC 1 cut(s) 277
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 3 cut(s) 56, 63, 134
SetI ASST 5 cut(s) 101, 128, 134, 173, 234
SfaNI GCATC 1 cut(s) 126
Sse9I AATT 1 cut(s) 303
SsiI CCGC 3 cut(s) 155, 204, 207
SstI GAGCTC 1 cut(s) 134
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 1 cut(s) 128
TaqI TCGA 3 cut(s) 104, 128, 134
TasI AATT 1 cut(s) 303
TauI GCSGC 2 cut(s) 157, 209
TscAI CASTG 3 cut(s) 18, 61, 280
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 3 cut(s) 18, 61, 280
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.