Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

17801737 .. 17804203

Gene Structure 2467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTTCTTTGTTCAAGGAGCAAGCAAAGCTATCAGCTTATCGTGATAGAAGATTTTCAGGAACACAAGAGGAGTTTGATGAAGCGCTAAGAGCATCTACAACGGTTTACATTGGCAATGTGTCTTTTTACACTACTGAAGAACAGCTTTACGAGCTTTTCTCTAGAGCTGGAGAAATCAAAAAGATCATCATGGGTTTGGATAAGAACACTAAAACACCTTGTGGCTTTTGTTTCGTCCTGTTCTACTCTAGAGAGGATACTGAAGATGCAGTCAAGTATATAAGTGGGACTATTCTCGATGACCGGCCTATTCGTGTGGATTTTGATTGGGGATTCCAAGAAGGAAGACAATGGGGCCGTGGTAGAAGCGGTGGCCAGGTTCGTGATGAATACCGTACAGATTACGATCCTGCTAGAGGTGGTTATGGGAAATTAGTTCAGAAGGAACTCGAAGCACAAAGGCAGCTCGTGGATTACGGTACTGGCTCATTGGGAGCTTATCCTCAAGCTGCGCCAACGAATTATGGAAATGGAAGGCGTGGTGGTGGAAACTATGGTCAAGGAGGACAAAATCGCCATGGAAGAGGAGACTACCATCGGAAACGACAAAGAGACGATGATCGCTATGGCCGCGATAACTCAAGAAGAAACACAGATCATGAGTCTAGGAGAGACACTGATAGTGACATGAGACCGGAGAAGAACCCACGATTCCGTGAGAGCGGTGACTCCGATGACGATGGTGAAGATGATCGGAAGAGAAGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

257

Amino Acids

29.61

Weight (kDa)

6.87

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	1.3e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	726
AccII	CGCG	1 cut(s)	636
AciI	CCGC	3 cut(s)	372, 634, 726
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	2 cut(s)	376, 631
AcuI	CTGAAG	2 cut(s)	159, 285
AdeI	CACNNNGTG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	400, 484
AfeI	AGCGCT	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	8 cut(s)	31, 38, 148, 157, 170, 469, 500, 512
AluI	AGCT	8 cut(s)	31, 38, 148, 157, 170, 469, 500, 512
Alw26I	GTCTC	4 cut(s)	585, 609, 669, 688
AlwI	GGATC	1 cut(s)	404
Aor51HI	AGCGCT	1 cut(s)	87
AoxI	GGCC	4 cut(s)	308, 358, 376, 631
ApeKI	GCWGC	2 cut(s)	466, 512
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	88, 517
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	740, 758
BalI	TGGCCA	1 cut(s)	378
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	478, 499
BccI	CCATC	2 cut(s)	606, 737
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	380
BciVI	GTATCC	1 cut(s)	253
BcoDI	GTCTC	4 cut(s)	585, 609, 669, 688
BfaI	CTAG	4 cut(s)	165, 252, 417, 669
BfoI	RGCGCY	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	253
BglII	AGATCT	1 cut(s)	767
BisI	GCNGC	3 cut(s)	467, 513, 634
BlsI	GCNGC	3 cut(s)	468, 514, 635
Bme1390I	CCNGG	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	104, 259
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	492, 628
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	361, 580
BsaWI	WCCGGW	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	361, 580
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	2 cut(s)	86, 603
BseXI	GCAGC	2 cut(s)	478, 499
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	4 cut(s)	310, 360, 378, 633
BsiSI	CCGG	2 cut(s)	307, 698
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	4 cut(s)	585, 609, 669, 688
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	310, 360, 378, 633
Bso31I	GGTCTC	1 cut(s)	688
Bsp143I	GATC	6 cut(s)	186, 409, 622, 658, 754, 767
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	3 cut(s)	372, 634, 726
BspANI	GGCC	4 cut(s)	310, 360, 378, 633
BspFNI	CGCG	1 cut(s)	636
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	688
BsrBI	CCGCTC	1 cut(s)	726
BsrDI	GCAATG	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	361, 580
BssMI	GATC	6 cut(s)	186, 409, 622, 658, 754, 767
BssSI	CACGAG	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	3 cut(s)	106, 398, 482
Bst6I	CTCTTC	2 cut(s)	580, 755
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	2 cut(s)	361, 580
BstENI	CCTNNNNNAGG	1 cut(s)	417
BstFNI	CGCG	1 cut(s)	636
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	2 cut(s)	88, 517
BstKTI	GATC	6 cut(s)	189, 412, 625, 661, 757, 770
BstMAI	GTCTC	4 cut(s)	585, 609, 669, 688
BstMBI	GATC	6 cut(s)	186, 409, 622, 658, 754, 767
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 92, 154, 633
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	2 cut(s)	478, 499
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	767
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	4 cut(s)	310, 360, 378, 633
BtgI	CCRYGG	2 cut(s)	361, 580
BtsIMutI	CAGTG	1 cut(s)	678
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	2 cut(s)	88, 517
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	399, 483
CviAII	CATG	4 cut(s)	193, 581, 662, 691
CviQI	GTAC	2 cut(s)	399, 483
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	6 cut(s)	188, 411, 624, 660, 756, 769
DpnII	GATC	6 cut(s)	186, 409, 622, 658, 754, 767
DraIII	CACNNNGTG	1 cut(s)	224
EaeI	YGGCCR	2 cut(s)	376, 631
Eam1104I	CTCTTC	2 cut(s)	580, 755
EarI	CTCTTC	2 cut(s)	580, 755
Eco130I	CCWWGG	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	688
Eco47III	AGCGCT	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	159, 285
EcoNI	CCTNNNNNAGG	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
Esp3I	CGTCTC	1 cut(s)	609
FaeI	CATG	4 cut(s)	196, 584, 665, 694
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	4 cut(s)	192, 580, 661, 690
Fnu4HI	GCNGC	3 cut(s)	467, 513, 634
Fsp4HI	GCNGC	3 cut(s)	467, 513, 634
FspBI	CTAG	4 cut(s)	165, 252, 417, 669
GlaI	GCGC	2 cut(s)	87, 516
GluI	GCNGC	3 cut(s)	467, 513, 634
GsuI	CTGGAG	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	4 cut(s)	310, 360, 378, 633
HapII	CCGG	2 cut(s)	307, 698
HhaI	GCGC	2 cut(s)	88, 517
Hin1II	CATG	4 cut(s)	196, 584, 665, 694
Hin6I	GCGC	2 cut(s)	86, 515
HinP1I	GCGC	2 cut(s)	86, 515
HinfI	GANTC	4 cut(s)	336, 665, 714, 731
HpaII	CCGG	2 cut(s)	307, 698
HphI	GGTGA	2 cut(s)	740, 758
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	444, 603, 736, 759
Hpy188III	TCNNGA	8 cut(s)	44, 60, 165, 252, 299, 386, 645, 662
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	3 cut(s)	338, 439, 531
HpyCH4III	ACNGT	3 cut(s)	106, 398, 482
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 92, 154, 633
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	4 cut(s)	196, 584, 665, 694
HspAI	GCGC	2 cut(s)	86, 515
Kzo9I	GATC	6 cut(s)	186, 409, 622, 658, 754, 767
LmnI	GCTCC	2 cut(s)	19, 497
LpnPI	CCDG	9 cut(s)	45, 156, 254, 320, 365, 392, 426, 471, 711
Lsp1109I	GCAGC	2 cut(s)	478, 499
LweI	GCATC	2 cut(s)	104, 259
MaeI	CTAG	4 cut(s)	165, 252, 417, 669
MaeIII	GTNAC	2 cut(s)	686, 728
MalI	GATC	6 cut(s)	188, 411, 624, 660, 756, 769
MbiI	CCGCTC	1 cut(s)	726
MboI	GATC	6 cut(s)	186, 409, 622, 658, 754, 767
MboII	GAAGA	9 cut(s)	63, 152, 278, 360, 597, 660, 715, 761, 772
MflI	RGATCY	1 cut(s)	767
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	2 cut(s)	434, 523
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	674, 725
MnlI	CCTC	6 cut(s)	64, 250, 413, 516, 560, 581
Mox20I	TGGCCA	1 cut(s)	378
MroXI	GAANNNNTTC	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	1 cut(s)	772
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	2 cut(s)	307, 698
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	4 cut(s)	28, 92, 154, 633
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	6 cut(s)	186, 409, 622, 658, 754, 767
NlaIII	CATG	4 cut(s)	196, 584, 665, 694
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	2 cut(s)	686, 728
PagI	TCATGA	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	336, 714
PkrI	GCNGC	3 cut(s)	468, 514, 635
PleI	GAGTC	2 cut(s)	673, 725
PpsI	GAGTC	2 cut(s)	673, 725
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	767
RsaI	GTAC	2 cut(s)	400, 484
RsaNI	GTAC	2 cut(s)	399, 483
SaqAI	TTAA	1 cut(s)	772
SatI	GCNGC	3 cut(s)	467, 513, 634
Sau3AI	GATC	6 cut(s)	186, 409, 622, 658, 754, 767
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	674, 725
ScrFI	CCNGG	1 cut(s)	380
SfaNI	GCATC	2 cut(s)	104, 259
SmlI	CTYRAG	2 cut(s)	507, 643
SmoI	CTYRAG	2 cut(s)	507, 643
Sse9I	AATT	2 cut(s)	434, 523
SsiI	CCGC	3 cut(s)	372, 634, 726
SspMI	CTAG	4 cut(s)	165, 252, 417, 669
StyD4I	CCNGG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	3 cut(s)	106, 398, 482
TaqI	TCGA	2 cut(s)	300, 453
TasI	AATT	2 cut(s)	434, 523
TauI	GCSGC	1 cut(s)	636
TfiI	GAWTC	2 cut(s)	336, 714
Tru1I	TTAA	1 cut(s)	772
Tru9I	TTAA	1 cut(s)	772
TscAI	CASTG	1 cut(s)	685
TseFI	GTSAC	2 cut(s)	686, 728
TseI	GCWGC	2 cut(s)	466, 512
Tsp45I	GTSAC	2 cut(s)	686, 728
TspDTI	ATGAA	2 cut(s)	96, 405
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	1 cut(s)	685
XagI	CCTNNNNNAGG	1 cut(s)	417
XbaI	TCTAGA	2 cut(s)	164, 251
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	4 cut(s)	165, 252, 417, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.