Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

43723596 .. 43727552

Gene Structure 3957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018966

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCTTCCTTATTCAAGGATCAAGCCAAGCTTTCACAATATCGGGATAGAAGATTTCCTGGATCGCAAGAGGAATTTGAACAAGCACTTCTGGCATCAACGACTGTTTATATTGGGAATATGTCTTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTCTCTCGTGCTGGAGAAATTAAGAAGATAATTATGGGCTTGGATAAGAATACAAAAACGCCTTGTGGCTTTTGTTTTGTCCTATTCTATTCTCGAGAAGATACTGAGGATGCTGTAAAATATATAAGCGGGACTATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTCCAAGAAGGAAGGCAATGGGGCCGAGGGCGAAGTGGTGGGCAGGTTCGCGATGAATATCGTACTGATTATGATCCAGATATCCTTTTGCCACTTTGGAATTTGGAAGCTCAGAGAACACTTGTAGATTATGGTACTGGATCATTGGGTTCTTTCCCTCCAGTCATGCCACCTCCTCACTATGGTAGACAAGGGGGAGGCAATAATCATGGCGGTTCTCATCGGCATGGTAGAGATTTTCATCGGAAACGACACCGTGATGATGACCGCCAGTCATATGAGACCTCAAAGAGAAACTCAAATTATGAACCGCGGAAGAACTCTGATCTTGACTCTAGACCGGAGAAAAATCCACGGTTTCGTGAGAGTGGTGACTCTGATGATGAGGAAGAAGATGGCAAAAAGCGGCGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

251

Amino Acids

29.03

Weight (kDa)

6.12

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	1.2e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	523
AccII	CGCG	2 cut(s)	387, 649
AciI	CCGC	6 cut(s)	288, 549, 604, 647, 649, 742
AclWI	GGATC	4 cut(s)	27, 70, 404, 484
AcsI	RAATTY	2 cut(s)	74, 436
AfaI	GTAC	2 cut(s)	400, 472
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	16, 80
AhdI	GACNNNNNGTC	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	31, 157, 446
AluI	AGCT	3 cut(s)	31, 157, 446
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	4 cut(s)	27, 70, 404, 484
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	358
ApoI	RAATTY	2 cut(s)	74, 436
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	719
AvaI	CYCGRG	1 cut(s)	252
BauI	CACGAG	1 cut(s)	165
BccI	CCATC	1 cut(s)	725
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	611
BfaI	CTAG	1 cut(s)	672
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	1 cut(s)	743
BlsI	GCNGC	1 cut(s)	744
Bme1390I	CCNGG	1 cut(s)	60
BmeRI	GACNNNNNGTC	1 cut(s)	607
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	104, 259
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	2 cut(s)	192, 480
BsaBI	GATNNNNATC	3 cut(s)	393, 408, 576
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	3 cut(s)	361, 647, 689
BsaWI	WCCGGW	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	3 cut(s)	478, 497, 607
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	3 cut(s)	393, 408, 576
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	3 cut(s)	361, 647, 689
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	3 cut(s)	393, 408, 576
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	255, 461
BseNI	ACTGG	3 cut(s)	478, 497, 607
BseRI	GAGGAG	1 cut(s)	501
Bsh1236I	CGCG	2 cut(s)	387, 649
BshFI	GGCC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	677
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	1 cut(s)	611
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	19, 62, 304, 409, 476, 661
Bsp68I	TCGCGA	1 cut(s)	387
BspACI	CCGC	6 cut(s)	288, 549, 604, 647, 649, 742
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	256, 460
BspFNI	CGCG	2 cut(s)	387, 649
BspLI	GGNNCC	1 cut(s)	359
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	4 cut(s)	27, 70, 404, 484
BspQI	GCTCTTC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	478, 497, 607
BssECI	CCNNGG	3 cut(s)	361, 647, 689
BssMI	GATC	6 cut(s)	19, 62, 304, 409, 476, 661
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	106, 593, 693
Bst6I	CTCTTC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	264, 447
BstDSI	CCRYGG	2 cut(s)	647, 689
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	2 cut(s)	387, 649
BstKTI	GATC	6 cut(s)	22, 65, 307, 412, 479, 664
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	6 cut(s)	19, 62, 304, 409, 476, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstUI	CGCG	2 cut(s)	387, 649
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	2 cut(s)	647, 689
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	274
BtuMI	TCGCGA	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	358
Cfr42I	CCGCGG	1 cut(s)	650
Csp6I	GTAC	2 cut(s)	399, 471
CviAII	CATG	3 cut(s)	502, 545, 563
CviJI	RGCY	8 cut(s)	5, 26, 31, 157, 198, 228, 360, 446
CviKI_1	RGCY	8 cut(s)	5, 26, 31, 157, 198, 228, 360, 446
CviQI	GTAC	2 cut(s)	399, 471
DdeI	CTNAG	2 cut(s)	264, 447
DpnI	GATC	6 cut(s)	21, 64, 306, 411, 478, 663
DpnII	GATC	6 cut(s)	19, 62, 304, 409, 476, 661
DriI	GACNNNNNGTC	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	418
FaeI	CATG	3 cut(s)	505, 548, 566
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	501, 544, 562
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	743
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	743
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	1 cut(s)	743
GsuI	CTGGAG	2 cut(s)	192, 480
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	677
Hin1II	CATG	3 cut(s)	505, 548, 566
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	336, 668, 710
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	4 cut(s)	450, 582, 661, 715
Hpy188III	TCNNGA	9 cut(s)	44, 252, 254, 299, 386, 413, 665, 672, 698
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	2 cut(s)	338, 342
HpyCH4III	ACNGT	3 cut(s)	106, 593, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	264, 447
Hsp92II	CATG	3 cut(s)	505, 548, 566
KspI	CCGCGG	1 cut(s)	650
Kzo9I	GATC	6 cut(s)	19, 62, 304, 409, 476, 661
LguI	GCTCTTC	1 cut(s)	135
LweI	GCATC	2 cut(s)	104, 259
MaeI	CTAG	1 cut(s)	672
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	6 cut(s)	21, 64, 306, 411, 478, 663
MboI	GATC	6 cut(s)	19, 62, 304, 409, 476, 661
MboII	GAAGA	7 cut(s)	63, 152, 196, 269, 664, 737, 740
MluCI	AATT	5 cut(s)	74, 177, 189, 436, 637
MlyI	GAGTC	2 cut(s)	662, 704
MnlI	CCTC	9 cut(s)	64, 259, 356, 504, 519, 522, 527, 631, 715
MseI	TTAA	2 cut(s)	180, 751
MslI	CAYNNNNRTG	2 cut(s)	561, 594
MspA1I	CMGCKG	1 cut(s)	649
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	2 cut(s)	387, 649
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	6 cut(s)	19, 62, 304, 409, 476, 661
NlaIII	CATG	3 cut(s)	505, 548, 566
NlaIV	GGNNCC	1 cut(s)	359
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	707
NruI	TCGCGA	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	336
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	744
PleI	GAGTC	2 cut(s)	662, 704
PpsI	GAGTC	2 cut(s)	662, 704
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	358
RruI	TCGCGA	1 cut(s)	387
RsaI	GTAC	2 cut(s)	400, 472
RsaNI	GTAC	2 cut(s)	399, 471
RseI	CAYNNNNRTG	2 cut(s)	561, 594
SacII	CCGCGG	1 cut(s)	650
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	180, 751
SatI	GCNGC	1 cut(s)	743
Sau3AI	GATC	6 cut(s)	19, 62, 304, 409, 476, 661
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	662, 704
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	7 cut(s)	33, 159, 384, 448, 511, 623, 751
SfaNI	GCATC	2 cut(s)	104, 259
Sfr274I	CTCGAG	1 cut(s)	252
Sfr303I	CCGCGG	1 cut(s)	650
SgrBI	CCGCGG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	561, 594
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	5 cut(s)	74, 177, 189, 436, 637
SsiI	CCGC	6 cut(s)	288, 549, 604, 647, 649, 742
SspMI	CTAG	1 cut(s)	672
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	106, 593, 693
TaqI	TCGA	1 cut(s)	253
TasI	AATT	5 cut(s)	74, 177, 189, 436, 637
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	2 cut(s)	180, 751
Tru9I	TTAA	2 cut(s)	180, 751
TseFI	GTSAC	1 cut(s)	707
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	3 cut(s)	405, 566, 657
XapI	RAATTY	2 cut(s)	74, 436
XbaI	TCTAGA	1 cut(s)	671
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	523
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.