Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

20318068 .. 20322931

Gene Structure 4864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTTCCTTGTTCAAGGATCAAGCGAAGCTTTCACAATATCGGGATAGAAGATTTCCTGGATCACAAGAGGAATTTGAACAAGCACTTCTGTCATCAACAACCGTTTATATTGGGAATATGTCTTTTTATACAACAGAAGAGCAAGTGTATGAGCTTTTCTCTCGTGCTGGAGAAATTAAGAAGATAATTATGGGCTTGGATAAGAATACAAAAACACCTTGTGGCTTTTGTTTTGTCCTATTCTATTCTCGAGAAGATACTGAGGATGCCGTAAAATATATAAGCGGGACTATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTCCAAGAAGGAAGGCAATGGGGCCGAGGGCGAAGTGGTGGACAGGTTCGTGATGAATATCGTACTGATTATGATCCAGGTAGAGGTGGATATGGCAAATTAGTTCAACGGGAGTTGGAAGCTCAGAGAACACTGGTTGATTATGGTACTGGATCATTGGGTACTTTTCCTCCGGTCATGCCACCTCCTCACTATGGTAGACAAGGGGGAGGCAATAATCATGGTGGTTCTCATCGGCATGGTAGAGCTGATTTTCATCGGAAACGACACCGTGATGATGACCGCCAGTCATATGAGAATTCAAAGAGGAGCTCAAATTATGAATCACGGAAGAACTCTGATCATGACTCTAGACCGGAGAAAAATCCACGGTTTCGTGAGAGTGGTGACTCTGATGACGAGGAAGAAGATGACAAAAAGCGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

255

Amino Acids

29.37

Weight (kDa)

6.41

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	1.2e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	3 cut(s)	288, 619, 757
AclWI	GGATC	4 cut(s)	27, 70, 404, 496
AcsI	RAATTY	2 cut(s)	74, 634
AdeI	CACNNNGTG	1 cut(s)	224
AfaI	GTAC	3 cut(s)	400, 484, 499
AfiI	CCNNNNNNNGG	2 cut(s)	419, 530
AgsI	TTSAA	4 cut(s)	16, 80, 443, 639
AhdI	GACNNNNNGTC	1 cut(s)	622
AjnI	CCWGG	2 cut(s)	58, 412
AluBI	AGCT	5 cut(s)	31, 157, 458, 584, 648
AluI	AGCT	5 cut(s)	31, 157, 458, 584, 648
Alw21I	GWGCWC	1 cut(s)	650
AlwI	GGATC	4 cut(s)	27, 70, 404, 496
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	358, 758
ApoI	RAATTY	2 cut(s)	74, 634
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	734
AvaI	CYCGRG	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	650
BauI	CACGAG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	650
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	2 cut(s)	60, 414
BclI	TGATCA	1 cut(s)	676
BfaI	CTAG	1 cut(s)	687
BisI	GCNGC	1 cut(s)	758
BlsI	GCNGC	1 cut(s)	759
Bme1390I	CCNGG	2 cut(s)	60, 414
BmeRI	GACNNNNNGTC	1 cut(s)	622
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	2 cut(s)	60, 414
BmsI	GCATC	1 cut(s)	259
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	1 cut(s)	192
BsaBI	GATNNNNATC	3 cut(s)	393, 408, 591
BsaJI	CCNNGG	2 cut(s)	361, 704
BsaWI	WCCGGW	2 cut(s)	508, 691
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 530
Bse1I	ACTGG	3 cut(s)	474, 490, 622
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	3 cut(s)	393, 408, 591
BseBI	CCWGG	2 cut(s)	60, 414
BseDI	CCNNGG	2 cut(s)	361, 704
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	3 cut(s)	393, 408, 591
BseLI	CCNNNNNNNGG	2 cut(s)	419, 530
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	255, 473
BseNI	ACTGG	3 cut(s)	474, 490, 622
BseRI	GAGGAG	2 cut(s)	513, 658
BshFI	GGCC	2 cut(s)	360, 760
BsiHKAI	GWGCWC	1 cut(s)	650
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	509, 692
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	419, 530
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	360, 760
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp143I	GATC	6 cut(s)	19, 62, 304, 409, 488, 676
BspACI	CCGC	3 cut(s)	288, 619, 757
BspANI	GGCC	2 cut(s)	360, 760
BspCNI	CTCAG	2 cut(s)	256, 472
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	4 cut(s)	27, 70, 404, 496
BspQI	GCTCTTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	474, 490, 622
BssECI	CCNNGG	2 cut(s)	361, 704
BssMI	GATC	6 cut(s)	19, 62, 304, 409, 488, 676
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	60, 414
Bst4CI	ACNGT	3 cut(s)	106, 608, 708
Bst6I	CTCTTC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	264, 459
BstDSI	CCRYGG	1 cut(s)	704
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	6 cut(s)	22, 65, 307, 412, 491, 679
BstMBI	GATC	6 cut(s)	19, 62, 304, 409, 488, 676
BstNI	CCWGG	2 cut(s)	60, 414
BstSCI	CCNGG	2 cut(s)	58, 412
BsuRI	GGCC	2 cut(s)	360, 760
BtgI	CCRYGG	1 cut(s)	704
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	467
CciI	TCATGA	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	399, 483, 498
CviAII	CATG	4 cut(s)	514, 557, 575, 680
CviQI	GTAC	3 cut(s)	399, 483, 498
DdeI	CTNAG	2 cut(s)	264, 459
DpnI	GATC	6 cut(s)	21, 64, 306, 411, 490, 678
DpnII	GATC	6 cut(s)	19, 62, 304, 409, 488, 676
DraIII	CACNNNGTG	1 cut(s)	224
DriI	GACNNNNNGTC	1 cut(s)	622
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	650
Eco53kI	GAGCTC	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	634
EcoRII	CCWGG	2 cut(s)	58, 412
EcoT38I	GRGCYC	1 cut(s)	650
FaeI	CATG	4 cut(s)	517, 560, 578, 683
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	4 cut(s)	513, 556, 574, 679
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	758
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	1 cut(s)	758
FspBI	CTAG	1 cut(s)	687
GluI	GCNGC	1 cut(s)	758
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	2 cut(s)	360, 760
HapII	CCGG	2 cut(s)	509, 692
Hin1II	CATG	4 cut(s)	517, 560, 578, 683
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	4 cut(s)	336, 659, 683, 725
HpaII	CCGG	2 cut(s)	509, 692
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	2 cut(s)	377, 536
Hpy188I	TCNGA	4 cut(s)	462, 597, 676, 730
Hpy188III	TCNNGA	8 cut(s)	44, 252, 254, 299, 386, 680, 687, 713
Hpy8I	GTNNAC	2 cut(s)	377, 536
HpyAV	CCTTC	2 cut(s)	338, 342
HpyCH4III	ACNGT	3 cut(s)	106, 608, 708
HpyF3I	CTNAG	2 cut(s)	264, 459
Hsp92II	CATG	4 cut(s)	517, 560, 578, 683
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	6 cut(s)	19, 62, 304, 409, 488, 676
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	645
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	1 cut(s)	722
MalI	GATC	6 cut(s)	21, 64, 306, 411, 490, 678
MboI	GATC	6 cut(s)	19, 62, 304, 409, 488, 676
MboII	GAAGA	7 cut(s)	63, 152, 196, 269, 679, 752, 755
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	6 cut(s)	74, 177, 189, 434, 634, 652
MlyI	GAGTC	2 cut(s)	677, 719
MmeI	TCCRAC	1 cut(s)	432
MseI	TTAA	2 cut(s)	180, 763
MslI	CAYNNNNRTG	2 cut(s)	573, 609
MspI	CCGG	2 cut(s)	509, 692
MspR9I	CCNGG	2 cut(s)	60, 414
MvaI	CCWGG	2 cut(s)	60, 414
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	6 cut(s)	19, 62, 304, 409, 488, 676
NlaIII	CATG	4 cut(s)	517, 560, 578, 683
NlaIV	GGNNCC	1 cut(s)	359
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	722
PaeR7I	CTCGAG	1 cut(s)	252
PagI	TCATGA	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	336, 659
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	759
PleI	GAGTC	2 cut(s)	677, 719
PpsI	GAGTC	2 cut(s)	677, 719
Psp124BI	GAGCTC	1 cut(s)	650
Psp6I	CCWGG	2 cut(s)	58, 412
PspGI	CCWGG	2 cut(s)	58, 412
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	358
RsaI	GTAC	3 cut(s)	400, 484, 499
RsaNI	GTAC	3 cut(s)	399, 483, 498
RseI	CAYNNNNRTG	2 cut(s)	573, 609
SacI	GAGCTC	1 cut(s)	650
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	180, 763
SatI	GCNGC	1 cut(s)	758
Sau3AI	GATC	6 cut(s)	19, 62, 304, 409, 488, 676
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	677, 719
ScrFI	CCNGG	2 cut(s)	60, 414
SduI	GDGCHC	1 cut(s)	650
SfaNI	GCATC	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	573, 609
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	6 cut(s)	74, 177, 189, 434, 634, 652
SsiI	CCGC	3 cut(s)	288, 619, 757
SspMI	CTAG	1 cut(s)	687
SstI	GAGCTC	1 cut(s)	650
StyD4I	CCNGG	2 cut(s)	58, 412
TaaI	ACNGT	3 cut(s)	106, 608, 708
TaqI	TCGA	1 cut(s)	253
TasI	AATT	6 cut(s)	74, 177, 189, 434, 634, 652
TauI	GCSGC	1 cut(s)	760
TfiI	GAWTC	2 cut(s)	336, 659
Tru1I	TTAA	2 cut(s)	180, 763
Tru9I	TTAA	2 cut(s)	180, 763
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	3 cut(s)	405, 581, 672
TspGWI	ACGGA	1 cut(s)	679
TspRI	CASTG	1 cut(s)	474
XapI	RAATTY	2 cut(s)	74, 634
XbaI	TCTAGA	1 cut(s)	686
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.