Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

22084076 .. 22085581

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTTCGTTATTTAAGGACCAATCAAAGCTGTCGCAGTACCGGGATAGAAGGTTTCCGGGGTCACAAGAGGAGTTTGAACAAGCACTCTTGGCATCAACAACTGTTTACATTGGGAATATGTCCTTCTACACGACAGAAGAGCAAGTTTACGAGCTCTTCTCTCGCGCCGGAGAAATTAAGAAGATAATTATGGGCTTGGATAAGAATACCAAAACCCCTTGTGGTTTTTGTTTTGTCCTATACTATTCTCGAGAGGATACTGAGGATGCTGTAAAGTATATTAGCGGGACTATTCTTGATGATCGCCCTATTCGTGTGGATTTTGATTGGGGATTTCAAGAGGGAAGGCAATGGGGTCGTGGGCGAAGTGGTGGACAGGTGCGCGATGAGTATCGTACTGATTATGATCCTGATATCCTTTTGATTAGTTTGGAATGTCTGGAAAAGCTTTCTTTAGTATGGTTTATAAATTATAGTGTTGCTTGTTCCTCTGAGATTAAAAGTGGTGCCAAGCTTTTATTTTTCTTGCAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

180

Amino Acids

20.74

Weight (kDa)

4.93

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	1.2e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	509
AccII	CGCG	2 cut(s)	168, 387
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	404
AfaI	GTAC	2 cut(s)	41, 400
AgsI	TTSAA	2 cut(s)	80, 341
AluBI	AGCT	4 cut(s)	31, 157, 451, 517
AluI	AGCT	4 cut(s)	31, 157, 451, 517
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	170, 387
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	2 cut(s)	44, 60
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	44, 60
BfaI	CTAG	1 cut(s)	538
BfuI	GTATCC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	44, 60
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	44, 60
BmsI	GCATC	2 cut(s)	104, 259
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpuMI	CCSGG	2 cut(s)	44, 60
BsaBI	GATNNNNATC	2 cut(s)	393, 408
BsaJI	CCNNGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	2 cut(s)	393, 408
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	2 cut(s)	393, 408
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	255, 486
BseRI	GAGGAG	1 cut(s)	86
Bsh1236I	CGCG	2 cut(s)	168, 387
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	43, 59, 171
BslFI	GGGAC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	304, 409
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	256, 487
BspFNI	CGCG	2 cut(s)	168, 387
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	2 cut(s)	135, 164
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	304, 409
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	2 cut(s)	135, 164
BstDEI	CTNAG	2 cut(s)	264, 495
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	2 cut(s)	168, 387
BstHHI	GCGC	2 cut(s)	170, 387
BstKTI	GATC	2 cut(s)	307, 412
BstMBI	GATC	2 cut(s)	304, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	42, 58
BstUI	CGCG	2 cut(s)	168, 387
BsuI	GTATCC	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	274
CfoI	GCGC	2 cut(s)	170, 387
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	40, 399
CviJI	RGCY	6 cut(s)	5, 31, 157, 198, 451, 517
CviKI_1	RGCY	6 cut(s)	5, 31, 157, 198, 451, 517
CviQI	GTAC	2 cut(s)	40, 399
DdeI	CTNAG	2 cut(s)	264, 495
DpnI	GATC	2 cut(s)	306, 411
DpnII	GATC	2 cut(s)	304, 409
Eam1104I	CTCTTC	2 cut(s)	135, 164
EarI	CTCTTC	2 cut(s)	135, 164
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	159
FaiI	YATR	8 cut(s)	122, 194, 244, 282, 408, 463, 470, 477
FaqI	GGGAC	1 cut(s)	304
FauI	CCCGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	538
GlaI	GCGC	2 cut(s)	169, 386
HapII	CCGG	3 cut(s)	43, 59, 171
HhaI	GCGC	2 cut(s)	170, 387
Hin6I	GCGC	2 cut(s)	168, 385
HinP1I	GCGC	2 cut(s)	168, 385
HindIII	AAGCTT	2 cut(s)	449, 515
HpaII	CCGG	3 cut(s)	43, 59, 171
Hpy166II	GTNNAC	3 cut(s)	109, 151, 377
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	6 cut(s)	252, 254, 299, 341, 413, 443
Hpy8I	GTNNAC	3 cut(s)	109, 151, 377
HpyAV	CCTTC	3 cut(s)	45, 136, 342
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	264, 495
HspAI	GCGC	2 cut(s)	168, 385
Kzo9I	GATC	2 cut(s)	304, 409
LguI	GCTCTTC	2 cut(s)	135, 164
LpnPI	CCDG	6 cut(s)	56, 72, 184, 365, 426, 428
LweI	GCATC	2 cut(s)	104, 259
MaeI	CTAG	1 cut(s)	538
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	2 cut(s)	306, 411
MboI	GATC	2 cut(s)	304, 409
MboII	GAAGA	3 cut(s)	151, 152, 196
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	177, 189, 472
MnlI	CCTC	5 cut(s)	64, 250, 259, 337, 502
MseI	TTAA	3 cut(s)	15, 180, 501
MspI	CCGG	3 cut(s)	43, 59, 171
MspR9I	CCNGG	2 cut(s)	44, 60
MvnI	CGCG	2 cut(s)	168, 387
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	2 cut(s)	44, 60
NdeII	GATC	2 cut(s)	304, 409
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	252
PciSI	GCTCTTC	2 cut(s)	135, 164
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	19
RsaI	GTAC	2 cut(s)	41, 400
RsaNI	GTAC	2 cut(s)	40, 399
SacI	GAGCTC	1 cut(s)	159
SapI	GCTCTTC	2 cut(s)	135, 164
SaqAI	TTAA	3 cut(s)	15, 180, 501
Sau3AI	GATC	2 cut(s)	304, 409
Sau96I	GGNCC	1 cut(s)	19
ScrFI	CCNGG	2 cut(s)	44, 60
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	6 cut(s)	33, 56, 159, 384, 453, 519
SfaNI	GCATC	2 cut(s)	104, 259
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	177, 189, 472
SsiI	CCGC	1 cut(s)	288
SspMI	CTAG	1 cut(s)	538
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	42, 58
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	177, 189, 472
Tru1I	TTAA	3 cut(s)	15, 180, 501
Tru9I	TTAA	3 cut(s)	15, 180, 501
TseFI	GTSAC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	19
XhoI	CTCGAG	1 cut(s)	252
XspI	CTAG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.