Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

30949573 .. 30952307

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1242300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTTCCTTGTTTAAGGAGCAATCGAAGCTCTCGCAGTACTGGGATAGACGGTTTCCCGGTTCTCAGGAGGAATTTGAACAAGCCCTCCTGGCATCAACCACTGTTTACATTGGGAATATGTCCTTCTATACGACAGAAGAGCAAGTTTATGAGCTCTTCTCTCGCGCCGGAGAAATTAAGAAGATAATTATGGGCTTGGATAAGAATACAAAGACGCCTTGTGGTTTTTGTTTTGTTTTGTACTATTCTCGAGAGGATACTGAGGATGCTGTAAAATATATAAGCGGGACTATTCTTGATGATCGCCCTATTCGTGTGGATTTCGATTGGGGATTTCAAGAGGGAAGGCAATGGGGTCGTGGGCGAAGTGGTGGACAGGTGCGTGATGAATATCGTGGGTATGGTAAGTTAGTTCAAAAAGAGTTGGAAGCTCAAAGATCACTTGTTGATTATGGAACTGGATCATTGGGATCTTTCCCTCCAGTCATGCCACCTCACTCAAATTCGAAGAAAAACTTAGTGCTGGAAAATATAGACATTGGATTCATATTGCAAAATAGGTGGAATAGGGGGGGGGGGGGTGGGTGGAAAACTACTGATCTGTGTCTCACGGCTACAAATAGAACCTGGAGCTTCATGCATTGCATCAGGATTGAATGCAACTATCTGAAGGGACTACAAGCATTAGTAGCGATCCTGTTGAGATGCATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

240

Amino Acids

27.35

Weight (kDa)

8.15

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	2.1e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	3 cut(s)	472, 481, 691
AcsI	RAATTY	2 cut(s)	74, 505
AcuI	CTGAAG	1 cut(s)	692
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	2 cut(s)	41, 245
AgsI	TTSAA	4 cut(s)	80, 341, 419, 659
AjnI	CCWGG	2 cut(s)	90, 629
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	4 cut(s)	31, 157, 434, 636
AluI	AGCT	4 cut(s)	31, 157, 434, 636
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	3 cut(s)	472, 481, 691
Ama87I	CYCGRG	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	74, 505
AspLEI	GCGC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	60
AsuII	TTCGAA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BceAI	ACGGC	1 cut(s)	630
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	2 cut(s)	92, 631
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	614
BfuI	GTATCC	1 cut(s)	253
BglI	GCCNNNNNGGC	1 cut(s)	92
BmcAI	AGTACT	1 cut(s)	41
Bme1390I	CCNGG	3 cut(s)	60, 92, 631
BmeT110I	CYCGRG	1 cut(s)	252
BmrFI	CCNGG	3 cut(s)	60, 92, 631
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	4 cut(s)	104, 259, 657, 698
BmuI	ACTGGG	1 cut(s)	52
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	2 cut(s)	468, 652
Bpu14I	TTCGAA	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse1I	ACTGG	3 cut(s)	47, 466, 485
Bse3DI	GCAATG	2 cut(s)	359, 643
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	92, 631
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	393
BseMI	GCAATG	2 cut(s)	359, 643
BseMII	CTCAG	2 cut(s)	80, 255
BseNI	ACTGG	3 cut(s)	47, 466, 485
Bsh1236I	CGCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	60, 171
BslFI	GGGAC	2 cut(s)	304, 690
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	2 cut(s)	304, 690
BsmI	GAATGC	1 cut(s)	665
BsoBI	CYCGRG	1 cut(s)	252
Bsp119I	TTCGAA	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	6 cut(s)	304, 440, 464, 473, 601, 696
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	79, 256
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	3 cut(s)	472, 481, 691
BspQI	GCTCTTC	2 cut(s)	135, 164
BspT104I	TTCGAA	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	359, 643
BsrI	ACTGG	3 cut(s)	47, 466, 485
BssMI	GATC	6 cut(s)	304, 440, 464, 473, 601, 696
BssNI	GRCGYC	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	92, 631
Bst4CI	ACNGT	2 cut(s)	54, 106
Bst6I	CTCTTC	2 cut(s)	135, 164
BstACI	GRCGYC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	509
BstDEI	CTNAG	3 cut(s)	66, 264, 520
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	6 cut(s)	307, 443, 467, 476, 604, 699
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	6 cut(s)	304, 440, 464, 473, 601, 696
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 92, 692
BstNI	CCWGG	2 cut(s)	92, 631
BstSCI	CCNGG	3 cut(s)	58, 90, 629
BstUI	CGCG	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	102
CfoI	GCGC	1 cut(s)	170
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	40, 244
CspCI	CAANNNNNGTGG	2 cut(s)	545, 580
CviAII	CATG	2 cut(s)	490, 640
CviJI	RGCY	8 cut(s)	5, 31, 86, 157, 198, 434, 617, 636
CviKI_1	RGCY	8 cut(s)	5, 31, 86, 157, 198, 434, 617, 636
CviQI	GTAC	2 cut(s)	40, 244
DdeI	CTNAG	3 cut(s)	66, 264, 520
DpnI	GATC	6 cut(s)	306, 442, 466, 475, 603, 698
DpnII	GATC	6 cut(s)	304, 440, 464, 473, 601, 696
Eam1104I	CTCTTC	2 cut(s)	135, 164
EarI	CTCTTC	2 cut(s)	135, 164
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	692
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	90, 629
EcoT22I	ATGCAT	2 cut(s)	645, 713
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	2 cut(s)	493, 643
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	2 cut(s)	304, 690
FatI	CATG	2 cut(s)	489, 639
FauI	CCCGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	159
GlaI	GCGC	1 cut(s)	169
GsuI	CTGGAG	2 cut(s)	468, 652
HapII	CCGG	2 cut(s)	60, 171
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	493, 643
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	546
HpaII	CCGG	2 cut(s)	60, 171
Hpy166II	GTNNAC	2 cut(s)	109, 377
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	6 cut(s)	68, 252, 254, 299, 341, 652
Hpy8I	GTNNAC	2 cut(s)	109, 377
HpyAV	CCTTC	3 cut(s)	136, 342, 667
HpyCH4III	ACNGT	2 cut(s)	54, 106
HpyCH4V	TGCA	5 cut(s)	556, 643, 648, 663, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 92, 692
HpyF3I	CTNAG	3 cut(s)	66, 264, 520
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	493, 643
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	6 cut(s)	304, 440, 464, 473, 601, 696
LguI	GCTCTTC	2 cut(s)	135, 164
LmnI	GCTCC	2 cut(s)	19, 633
LweI	GCATC	4 cut(s)	104, 259, 657, 698
MalI	GATC	6 cut(s)	306, 442, 466, 475, 603, 698
MboI	GATC	6 cut(s)	304, 440, 464, 473, 601, 696
MboII	GAAGA	4 cut(s)	151, 152, 196, 523
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	74, 177, 189, 505
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	7 cut(s)	64, 98, 250, 259, 337, 492, 507
Mph1103I	ATGCAT	2 cut(s)	645, 713
MseI	TTAA	2 cut(s)	15, 180
MspI	CCGG	2 cut(s)	60, 171
MspR9I	CCNGG	3 cut(s)	60, 92, 631
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	2 cut(s)	92, 631
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	28, 92, 692
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	6 cut(s)	304, 440, 464, 473, 601, 696
NlaIII	CATG	2 cut(s)	493, 643
NsiI	ATGCAT	2 cut(s)	645, 713
NspV	TTCGAA	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	252
PciSI	GCTCTTC	2 cut(s)	135, 164
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	90, 629
PspGI	CCWGG	2 cut(s)	90, 629
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	2 cut(s)	41, 245
RsaNI	GTAC	2 cut(s)	40, 244
SacI	GAGCTC	1 cut(s)	159
SapI	GCTCTTC	2 cut(s)	135, 164
SaqAI	TTAA	2 cut(s)	15, 180
Sau3AI	GATC	6 cut(s)	304, 440, 464, 473, 601, 696
ScaI	AGTACT	1 cut(s)	41
ScrFI	CCNGG	3 cut(s)	60, 92, 631
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	8 cut(s)	33, 159, 384, 436, 499, 566, 632, 638
SfaNI	GCATC	4 cut(s)	104, 259, 657, 698
Sfr274I	CTCGAG	1 cut(s)	252
SfuI	TTCGAA	1 cut(s)	509
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	4 cut(s)	74, 177, 189, 505
SsiI	CCGC	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	58, 90, 629
TaaI	ACNGT	2 cut(s)	54, 106
TaqI	TCGA	4 cut(s)	26, 253, 327, 509
TasI	AATT	4 cut(s)	74, 177, 189, 505
TatI	WGTACW	2 cut(s)	39, 243
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	2 cut(s)	15, 180
Tru9I	TTAA	2 cut(s)	15, 180
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	405, 538, 628
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	2 cut(s)	74, 505
XhoI	CTCGAG	1 cut(s)	252
ZrmI	AGTACT	1 cut(s)	41
Zsp2I	ATGCAT	2 cut(s)	645, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.