Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Reverse (-)

29454920 .. 29458978

Gene Structure 4059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0275100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATAGGTACCAGAGGGTGGAGAAGCCCAAGGCAGAGGCCACGCCTATAAACGAGAATGAGATTCGCATCACCGCTCAAGGTAGAATGAGGAACTATATTACTTACGCCACCACTCTCCTTCAGGACAAAGGGTCTAGTGAAATTGTCCTCAAGGCAATGGGCAGAGCTATCAATAAAACTGTGATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGCCTCCATCAGAATACTTCTATTGGATCAACTGATATAACTGACGTGTGGGAGCCCCTGGAAGAAGGCCTGCTTCCTCTAGAGACTACTCGGCATGTTTCAATGATCACGATTACTCTGTCAAAGACAGAGCTGAAGACAACCTCTACAGGCTACCAACCCCCTATTCCGGCTGATCAAGTGAAACCATTGAATGATTTTGAGGATGATGGAGAGGGTTCACCTAGATTCCGAGGCAGGGGACGTGGTGGCCGAGGAAGAAGCAGGGGTAGAGGGAGCTACAATGGAGTTGTTGATTATAATGGAGATGGTTGGGATGGTGGGCGTGGCTATGGTGGCAGAGGTAGGGGCCGTGCGAGAGGTGGTTCTTTTAGGGGTCGAGGACGAGGTTATGGTCAGCAAGGTGGATACTATGATTATGCTGAAGGTGCACCTATCCAAGGTCGCGGGCGCGGCCGAGGAAGGGGAAGGGGCCGTGGGCGTGGTCGTAGTACTCGACTGGATGGCCAAGCACCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

247

Amino Acids

27.02

Weight (kDa)

10.39

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	20 - 84	1.4e-18	Alba
Rpp20	PF12328	42 - 111	1.5e-06	Rpp20 subunit of nuclear RNase MRP and P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccBSI	CCGCTC	1 cut(s)	77
AccII	CGCG	2 cut(s)	666, 672
AciI	CCGC	3 cut(s)	75, 666, 672
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	3 cut(s)	469, 673, 724
AcuI	CTGAAG	3 cut(s)	107, 374, 663
AfaI	GTAC	2 cut(s)	11, 712
AfiI	CCNNNNNNNGG	5 cut(s)	19, 388, 457, 659, 682
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	2 cut(s)	321, 412
AhdI	GACNNNNNGTC	1 cut(s)	133
AjiI	CACGTC	2 cut(s)	265, 464
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	4 cut(s)	170, 352, 498, 737
AluI	AGCT	4 cut(s)	170, 352, 498, 737
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	1 cut(s)	296
Alw44I	GTGCAC	1 cut(s)	648
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	8 cut(s)	39, 220, 286, 469, 568, 673, 691, 724
ApaLI	GTGCAC	1 cut(s)	648
ApeKI	GCWGC	1 cut(s)	737
Asp718I	GGTACC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	2 cut(s)	568, 691
AsuHPI	GGTGA	2 cut(s)	64, 432
BaeGI	GKGCMC	1 cut(s)	652
BalI	TGGCCA	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	1 cut(s)	724
BccI	CCATC	5 cut(s)	234, 422, 521, 530, 716
BceAI	ACGGC	2 cut(s)	555, 678
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	620
BclI	TGATCA	3 cut(s)	201, 324, 394
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	3 cut(s)	138, 299, 444
BfmI	CTRYAG	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	620
BisI	GCNGC	2 cut(s)	673, 738
BlsI	GCNGC	2 cut(s)	674, 739
BmcAI	AGTACT	1 cut(s)	712
Bme1390I	CCNGG	1 cut(s)	278
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmgBI	CACGTC	2 cut(s)	265, 464
BmgT120I	GGNCC	2 cut(s)	568, 691
BmiI	GGNNCC	4 cut(s)	11, 273, 569, 692
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	63, 137
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	7 cut(s)	30, 276, 451, 472, 658, 676, 694
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 388, 457, 659, 682
Bse1I	ACTGG	1 cut(s)	723
Bse3DI	GCAATG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	7 cut(s)	30, 276, 451, 472, 658, 676, 694
BseGI	GGATG	3 cut(s)	430, 541, 727
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	5 cut(s)	19, 388, 457, 659, 682
BseMI	GCAATG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	723
BseSI	GKGCMC	1 cut(s)	652
BseX3I	CGGCCG	1 cut(s)	673
BseXI	GCAGC	1 cut(s)	724
Bsh1236I	CGCG	2 cut(s)	666, 672
Bsh1285I	CGRYCG	1 cut(s)	676
BshFI	GGCC	8 cut(s)	41, 222, 288, 471, 570, 675, 693, 726
BshNI	GGYRCC	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	652
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	5 cut(s)	19, 388, 457, 659, 682
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	8 cut(s)	41, 222, 288, 471, 570, 675, 693, 726
Bsp1286I	GDGCHC	2 cut(s)	276, 652
Bsp143I	GATC	4 cut(s)	201, 245, 324, 394
BspACI	CCGC	3 cut(s)	75, 666, 672
BspANI	GGCC	8 cut(s)	41, 222, 288, 471, 570, 675, 693, 726
BspFNI	CGCG	2 cut(s)	666, 672
BspLI	GGNNCC	4 cut(s)	11, 273, 569, 692
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	9
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	723
BssECI	CCNNGG	7 cut(s)	30, 276, 451, 472, 658, 676, 694
BssMI	GATC	4 cut(s)	201, 245, 324, 394
BssT1I	CCWWGG	2 cut(s)	30, 658
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	290, 668
BstDSI	CCRYGG	1 cut(s)	694
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	430, 541, 727
BstFNI	CGCG	2 cut(s)	666, 672
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	4 cut(s)	204, 248, 327, 397
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	201, 245, 324, 394
BstMCI	CGRYCG	1 cut(s)	676
BstMWI	GCNNNNNNNGC	4 cut(s)	555, 647, 672, 737
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	652
BstUI	CGCG	2 cut(s)	666, 672
BstV1I	GCAGC	1 cut(s)	724
BstV2I	GAAGAC	1 cut(s)	362
BstZI	CGGCCG	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	8 cut(s)	41, 222, 288, 471, 570, 675, 693, 726
BtgI	CCRYGG	1 cut(s)	694
BtrI	CACGTC	2 cut(s)	265, 464
BtsCI	GGATG	3 cut(s)	430, 541, 727
Cac8I	GCNNGC	2 cut(s)	290, 668
CfoI	GCGC	1 cut(s)	672
Cfr13I	GGNCC	2 cut(s)	568, 691
Csp6I	GTAC	2 cut(s)	10, 711
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	2 cut(s)	10, 711
DpnI	GATC	4 cut(s)	203, 247, 326, 396
DpnII	GATC	4 cut(s)	201, 245, 324, 394
DriI	GACNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	3 cut(s)	469, 673, 724
EagI	CGGCCG	1 cut(s)	673
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EclXI	CGGCCG	1 cut(s)	673
Eco130I	CCWWGG	2 cut(s)	30, 658
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	276
Eco52I	CGGCCG	1 cut(s)	673
Eco57I	CTGAAG	3 cut(s)	107, 374, 663
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	30, 658
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	30, 658
FaeI	CATG	1 cut(s)	317
FaiI	YATR	9 cut(s)	50, 99, 257, 315, 519, 552, 612, 633, 639
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	1 cut(s)	313
FauI	CCCGC	1 cut(s)	659
FbaI	TGATCA	3 cut(s)	201, 324, 394
Fnu4HI	GCNGC	2 cut(s)	673, 738
FokI	GGATG	3 cut(s)	437, 548, 734
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	673, 738
FspBI	CTAG	3 cut(s)	138, 299, 444
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	2 cut(s)	673, 738
HaeIII	GGCC	8 cut(s)	41, 222, 288, 471, 570, 675, 693, 726
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	1 cut(s)	672
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HinfI	GANTC	2 cut(s)	64, 447
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	2 cut(s)	64, 432
Hpy166II	GTNNAC	2 cut(s)	440, 650
Hpy188I	TCNGA	2 cut(s)	231, 452
Hpy188III	TCNNGA	4 cut(s)	125, 205, 299, 328
Hpy8I	GTNNAC	2 cut(s)	440, 650
HpyAV	CCTTC	6 cut(s)	131, 204, 278, 638, 675, 681
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	2 cut(s)	264, 463
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	555, 647, 672, 737
HpySE526I	ACGT	2 cut(s)	264, 463
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	670
KpnI	GGTACC	1 cut(s)	13
Ksp22I	TGATCA	3 cut(s)	201, 324, 394
Kzo9I	GATC	4 cut(s)	201, 245, 324, 394
LmnI	GCTCC	2 cut(s)	271, 495
Lsp1109I	GCAGC	1 cut(s)	724
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	3 cut(s)	138, 299, 444
MaeII	ACGT	2 cut(s)	264, 463
MalI	GATC	4 cut(s)	203, 247, 326, 396
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	4 cut(s)	201, 245, 324, 394
MboII	GAAGA	3 cut(s)	293, 367, 489
MhlI	GDGCHC	2 cut(s)	276, 652
MlsI	TGGCCA	1 cut(s)	726
MluCI	AATT	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	726
Mox20I	TGGCCA	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	726
Msp20I	TGGCCA	1 cut(s)	726
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	666, 672
MwoI	GCNNNNNNNGC	4 cut(s)	555, 647, 672, 737
NdeII	GATC	4 cut(s)	201, 245, 324, 394
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	4 cut(s)	11, 273, 569, 692
NmeAIII	GCCGAG	3 cut(s)	289, 497, 701
NspI	RCATGY	1 cut(s)	317
PceI	AGGCCT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	2 cut(s)	469, 712
PfeI	GAWTC	2 cut(s)	64, 447
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	674, 739
PsiI	TTATAA	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	4 cut(s)	11, 273, 569, 692
PspPI	GGNCC	2 cut(s)	568, 691
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	2 cut(s)	11, 712
RsaNI	GTAC	2 cut(s)	10, 711
SatI	GCNGC	2 cut(s)	673, 738
Sau3AI	GATC	4 cut(s)	201, 245, 324, 394
Sau96I	GGNCC	2 cut(s)	568, 691
ScaI	AGTACT	1 cut(s)	712
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	276, 652
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	78, 152
SmoI	CTYRAG	2 cut(s)	78, 152
Sse9I	AATT	1 cut(s)	144
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	3 cut(s)	75, 666, 672
SspMI	CTAG	3 cut(s)	138, 299, 444
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	30, 658
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	2 cut(s)	267, 466
TaqI	TCGA	2 cut(s)	598, 715
TasI	AATT	1 cut(s)	144
TatI	WGTACW	1 cut(s)	710
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	2 cut(s)	64, 447
TseI	GCWGC	1 cut(s)	737
Van91I	CCANNNNNTGG	1 cut(s)	19
VneI	GTGCAC	1 cut(s)	648
XagI	CCTNNNNNAGG	1 cut(s)	657
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	3 cut(s)	138, 299, 444
ZrmI	AGTACT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.