Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Forward (+)

49526830 .. 49530237

Gene Structure 3408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCCGCCTCAACCGCCGCCAGATCCATTTTCCGGTCCTGCGCAGGCCGAAGCTGCGCCTCAGCGGTTCGGTTCGCCACTGAAGCGAAAGCTGCTCGCTCACCGTTTCGCATCGGAGCCAAGCAACCTACATCATCCCCCGCTCTCAGGTGTCCTGTTGAATTGAGCTTCTGTGTGGAGTCGATGCTGCCCTACCACACTGCCACGGCTTCGGCTTTGATGACTTCCATGCTTTCCATCACTCGCCGCAGTTACGGTTGGCTTCCGGAAGGTGATTTTCTTAACTTTATTCACTCAATTTGTGTGTGTGTGTGTTTCAAATTTATTTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.01

Weight (kDa)

9.39

Isoelectric Point (pI)

70.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	6 cut(s)	6, 15, 18, 65, 141, 247
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	33, 147
AgsI	TTSAA	2 cut(s)	161, 319
AluBI	AGCT	3 cut(s)	54, 92, 168
AluI	AGCT	3 cut(s)	54, 92, 168
AlwI	GGATC	1 cut(s)	18
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	2 cut(s)	3, 46
ApeKI	GCWGC	3 cut(s)	54, 92, 187
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	44, 59
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	93, 284
AvaII	GGWCC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	41, 79, 174
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	222
BisI	GCNGC	6 cut(s)	6, 18, 55, 93, 188, 247
BlsI	GCNGC	6 cut(s)	7, 19, 56, 94, 189, 248
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	2 cut(s)	120, 174
Bpu10I	CCTNAGC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	2 cut(s)	33, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 147
BseAI	TCCGGA	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	2 cut(s)	33, 147
BseMII	CTCAG	2 cut(s)	75, 160
BseXI	GCAGC	3 cut(s)	41, 79, 174
BshFI	GGCC	2 cut(s)	5, 48
BsiSI	CCGG	2 cut(s)	34, 266
BslI	CCNNNNNNNGG	2 cut(s)	33, 147
BsnI	GGCC	2 cut(s)	5, 48
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	6 cut(s)	6, 15, 18, 65, 141, 247
BspANI	GGCC	2 cut(s)	5, 48
BspCNI	CTCAG	2 cut(s)	74, 159
BspEI	TCCGGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	105, 257
BstC8I	GCNNGC	2 cut(s)	46, 97
BstDEI	CTNAG	2 cut(s)	61, 146
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	44, 59
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 54, 83, 92
BstV1I	GCAGC	3 cut(s)	41, 79, 174
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	5, 48
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	78, 198
Cac8I	GCNNGC	2 cut(s)	46, 97
CfoI	GCGC	2 cut(s)	44, 59
Cfr13I	GGNCC	1 cut(s)	36
CviAII	CATG	2 cut(s)	229, 333
CviJI	RGCY	9 cut(s)	5, 48, 54, 92, 119, 168, 209, 215, 262
CviKI_1	RGCY	9 cut(s)	5, 48, 54, 92, 119, 168, 209, 215, 262
DdeI	CTNAG	2 cut(s)	61, 146
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	102
FaeI	CATG	2 cut(s)	232, 336
FaiI	YATR	2 cut(s)	230, 334
FatI	CATG	2 cut(s)	228, 332
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	6 cut(s)	6, 18, 55, 93, 188, 247
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	6 cut(s)	6, 18, 55, 93, 188, 247
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	2 cut(s)	43, 58
GluI	GCNGC	6 cut(s)	6, 18, 55, 93, 188, 247
HaeIII	GGCC	2 cut(s)	5, 48
HapII	CCGG	2 cut(s)	34, 266
HhaI	GCGC	2 cut(s)	44, 59
Hin1II	CATG	2 cut(s)	232, 336
Hin6I	GCGC	2 cut(s)	42, 57
HinP1I	GCGC	2 cut(s)	42, 57
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	34, 266
HphI	GGTGA	2 cut(s)	93, 284
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	105, 257
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 54, 83, 92
HpyF3I	CTNAG	2 cut(s)	61, 146
Hsp92II	CATG	2 cut(s)	232, 336
HspAI	GCGC	2 cut(s)	42, 57
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	30, 34, 47, 52, 133, 168, 279
Lsp1109I	GCAGC	3 cut(s)	41, 79, 174
LweI	GCATC	2 cut(s)	120, 174
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	25
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MluCI	AATT	3 cut(s)	161, 297, 320
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	2 cut(s)	19, 70
MroI	TCCGGA	1 cut(s)	265
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	34, 266
MwoI	GCNNNNNNNGC	4 cut(s)	14, 54, 83, 92
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	232, 336
NlaIV	GGNNCC	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	43
PkrI	GCNGC	6 cut(s)	7, 19, 56, 94, 189, 248
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	6 cut(s)	6, 18, 55, 93, 188, 247
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	188
SetI	ASST	6 cut(s)	56, 94, 130, 152, 170, 274
SfaNI	GCATC	2 cut(s)	120, 174
SinI	GGWCC	1 cut(s)	36
Sse9I	AATT	3 cut(s)	161, 297, 320
SsiI	CCGC	6 cut(s)	6, 15, 18, 65, 141, 247
TaaI	ACNGT	2 cut(s)	105, 257
TaqI	TCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	161, 297, 320
TauI	GCSGC	3 cut(s)	8, 20, 249
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	2 cut(s)	85, 205
TseI	GCWGC	3 cut(s)	54, 92, 187
TspRI	CASTG	2 cut(s)	85, 205
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.