Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Forward (+)

36177080 .. 36177851

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43343.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCACTTCAACCGTCGCCAGATCCATTTTCCGTTCATGTGCCGGCCGAAGTTGCGCCTCTAAAGCCAAAGCTGCTCGCTCACCATTTCACATCGGAGCCAAGAAACCCACTTCTTCTCTGGCTCTCAGACCTTCTCCGCAACTGGCCAACACAACCCAGGTCTTCGCCGACTTCATCGATCGTATTCGACTCGACCCATCCAAACTTTCTGATTTTCCTTCGTCTTCAACGATTACGACATCCATCCACGTCGATCTCTTGGAAATAGCGAAGAAGCTCGAGCTCTCCGACTTCAAGCAATTCGTCTGTACCAGATCCTTTAATTCCTTGCAGATCGGCCTCGCAAATGGCAGAGCAACTGGAAATTGGGTATCGACCCCAATCGCGATACGCCAGCAATCCCCAAAAGTGGTCTTCATTTGTGTTCTGGTGTGTTTTGTATCATTGTATGCAATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase

Protein Analysis

155

Amino Acids

16.67

Weight (kDa)

10.05

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	389
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	18, 312
AcoI	YGGCCR	3 cut(s)	3, 46, 147
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	3 cut(s)	12, 231, 298
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	3 cut(s)	74, 280, 286
AluI	AGCT	3 cut(s)	74, 280, 286
Alw21I	GWGCWC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	18, 312
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	4 cut(s)	3, 46, 147, 340
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	281
BalI	TGGCCA	2 cut(s)	5, 149
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	3 cut(s)	157, 219, 409
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	208, 254
BciT130I	CCWGG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	161
BpiI	GAAGAC	3 cut(s)	157, 219, 409
Bsa29I	ATCGAT	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	150, 367
BseBI	CCWGG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	3 cut(s)	200, 242, 246
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	2 cut(s)	150, 367
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	389
Bsh1285I	CGRYCG	2 cut(s)	49, 184
BshFI	GGCC	4 cut(s)	5, 48, 149, 342
BshVI	ATCGAT	1 cut(s)	180
BsiEI	CGRYCG	2 cut(s)	49, 184
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	412
BsnI	GGCC	4 cut(s)	5, 48, 149, 342
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	5 cut(s)	23, 181, 256, 317, 336
Bsp68I	TCGCGA	1 cut(s)	389
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	4 cut(s)	5, 48, 149, 342
BspCNI	CTCAG	1 cut(s)	141
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	389
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	18, 312
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	150, 367
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	5 cut(s)	23, 181, 256, 317, 336
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	46, 79, 398
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	3 cut(s)	200, 242, 246
BstFNI	CGCG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	5 cut(s)	26, 184, 259, 320, 339
BstMBI	GATC	5 cut(s)	23, 181, 256, 317, 336
BstMCI	CGRYCG	2 cut(s)	49, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 65, 74
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	3 cut(s)	157, 219, 409
BstX2I	RGATCY	2 cut(s)	23, 317
BstYI	RGATCY	2 cut(s)	23, 317
BstZI	CGGCCG	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	4 cut(s)	5, 48, 149, 342
BsuTUI	ATCGAT	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	200, 242, 246
BtuMI	TCGCGA	1 cut(s)	389
Cac8I	GCNNGC	3 cut(s)	46, 79, 398
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	1 cut(s)	39
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	5 cut(s)	25, 183, 258, 319, 338
DpnII	GATC	5 cut(s)	23, 181, 256, 317, 336
EaeI	YGGCCR	3 cut(s)	3, 46, 147
EagI	CGGCCG	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	286
EclXI	CGGCCG	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	288
Eco52I	CGGCCG	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	1 cut(s)	42
FaiI	YATR	2 cut(s)	40, 453
FatI	CATG	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	3 cut(s)	187, 229, 233
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	1 cut(s)	75
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	5, 48, 149, 342
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	75
Hpy188I	TCNGA	4 cut(s)	98, 131, 214, 292
Hpy188III	TCNNGA	1 cut(s)	388
Hpy99I	CGWCG	2 cut(s)	20, 257
HpyAV	CCTTC	2 cut(s)	144, 231
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	334, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 65, 74
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	57
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	5 cut(s)	23, 181, 256, 317, 336
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	1 cut(s)	61
MaeII	ACGT	1 cut(s)	252
MalI	GATC	5 cut(s)	25, 183, 258, 319, 338
MboI	GATC	5 cut(s)	23, 181, 256, 317, 336
MboII	GAAGA	5 cut(s)	108, 157, 219, 286, 409
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	2 cut(s)	23, 317
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	2 cut(s)	5, 149
MluCI	AATT	4 cut(s)	302, 325, 367, 456
MluNI	TGGCCA	2 cut(s)	5, 149
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	2 cut(s)	70, 353
Mox20I	TGGCCA	2 cut(s)	5, 149
MroNI	GCCGGC	1 cut(s)	44
MscI	TGGCCA	2 cut(s)	5, 149
MseI	TTAA	1 cut(s)	324
Msp20I	TGGCCA	2 cut(s)	5, 149
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	3 cut(s)	54, 65, 74
NaeI	GCCGGC	1 cut(s)	46
NdeII	GATC	5 cut(s)	23, 181, 256, 317, 336
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	1 cut(s)	100
NruI	TCGCGA	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	2 cut(s)	230, 288
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	76
Ple19I	CGATCG	1 cut(s)	184
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	23, 317
PvuI	CGATCG	1 cut(s)	184
RruI	TCGCGA	1 cut(s)	389
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	5 cut(s)	23, 181, 256, 317, 336
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	6 cut(s)	76, 136, 165, 255, 282, 288
Sfr274I	CTCGAG	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	4 cut(s)	302, 325, 367, 456
SsiI	CCGC	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	6 cut(s)	180, 190, 195, 255, 282, 377
TasI	AATT	4 cut(s)	302, 325, 367, 456
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	27, 166, 409
TspGWI	ACGGA	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.