Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Forward (+)

16180110 .. 16180511

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCCACCTCAGCAGCCGCCAGATCCATTTTCCGCTCCTGCGCCGCCCGCAGCTCTGGCTGTGCGGCGCGGCTCGCCCCCGAAGCCAAAGCCGCCCGTTCCCCGTTCCGCATGGCCGGGAAGCGGCCTTCCTCTTCTTCTCCTTTTCCCGCTCTCCGGTCTCCTGTTCAATTGAGCTTCTGCGTGGAGTCCATGCTGCCCTACCACACTGCAACAGCTTCGGCTTTGATGAACTCAATGCTCTCTGTCACTCGCCACAGTTATGGCTGGCTTTCAGAAGGTACTCTCACTCTCACTTTCACCAATTTCTTCCTGAATTTGTGTATTTTTCTTTGGGTTTGTTGGAAATTGGAGCCGATGCTGCCCTCATCCTTGCACTTTTGGCTTTTTTTTTCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.77

Weight (kDa)

9.97

Isoelectric Point (pI)

74.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	36, 152
AccII	CGCG	1 cut(s)	70
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	2 cut(s)	3, 114
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	2 cut(s)	123, 156
AgsI	TTSAA	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	3 cut(s)	54, 177, 218
AluI	AGCT	3 cut(s)	54, 177, 218
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	3 cut(s)	3, 114, 125
ApeKI	GCWGC	4 cut(s)	14, 51, 196, 361
ApoI	RAATTY	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	44, 70
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	10
BbvI	GCAGC	4 cut(s)	26, 63, 183, 348
BcgI	CGANNNNNNTGC	2 cut(s)	201, 235
BciT130I	CCWGG	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	118, 397
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	118, 397
BmsI	GCATC	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	10
BpuMI	CCSGG	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 156
BseBI	CCWGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	2 cut(s)	123, 156
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	26, 63, 183, 348
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	3 cut(s)	5, 116, 127
BsiSI	CCGG	2 cut(s)	117, 157
BslI	CCNNNNNNNGG	2 cut(s)	123, 156
BsmAI	GTCTC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	5, 116, 127
Bso31I	GGTCTC	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	23
BspANI	GGCC	3 cut(s)	5, 116, 127
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	165
BsrBI	CCGCTC	2 cut(s)	36, 152
BssMI	GATC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	49, 75, 269
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	44, 70
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 48, 57, 74, 83, 92, 361, 382
BstNI	CCWGG	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	116, 395
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	4 cut(s)	26, 63, 183, 348
BstX2I	RGATCY	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	5, 116, 127
BtsCI	GGATG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	3 cut(s)	49, 75, 269
CfoI	GCGC	2 cut(s)	44, 70
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	2 cut(s)	112, 193
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	2 cut(s)	3, 114
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	395
FaeI	CATG	2 cut(s)	115, 196
FaiI	YATR	3 cut(s)	113, 194, 264
FatI	CATG	2 cut(s)	111, 192
FauI	CCCGC	2 cut(s)	56, 157
FokI	GGATG	1 cut(s)	355
GlaI	GCGC	2 cut(s)	43, 69
HaeIII	GGCC	3 cut(s)	5, 116, 127
HapII	CCGG	2 cut(s)	117, 157
HhaI	GCGC	2 cut(s)	44, 70
Hin1II	CATG	2 cut(s)	115, 196
Hin6I	GCGC	2 cut(s)	42, 68
HinP1I	GCGC	2 cut(s)	42, 68
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	2 cut(s)	117, 157
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	138, 272
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	212, 376
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 48, 57, 74, 83, 92, 361, 382
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	115, 196
HspAI	GCGC	2 cut(s)	42, 68
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	2 cut(s)	41, 352
LpnPI	CCDG	9 cut(s)	34, 42, 52, 130, 170, 177, 253, 326, 382
Lsp1109I	GCAGC	4 cut(s)	26, 63, 183, 348
LweI	GCATC	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	25
MbiI	CCGCTC	2 cut(s)	36, 152
MboI	GATC	1 cut(s)	23
MboII	GAAGA	3 cut(s)	126, 129, 301
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	170, 304, 316, 347
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	3 cut(s)	19, 142, 376
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	117, 157
MspR9I	CCNGG	2 cut(s)	118, 397
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	397
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	8 cut(s)	11, 48, 57, 74, 83, 92, 361, 382
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	115, 196
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	247
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	118, 397
SetI	ASST	5 cut(s)	11, 56, 179, 220, 283
SfaNI	GCATC	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	4 cut(s)	170, 304, 316, 347
StyD4I	CCNGG	2 cut(s)	116, 395
TaaI	ACNGT	1 cut(s)	260
TasI	AATT	4 cut(s)	170, 304, 316, 347
TauI	GCSGC	6 cut(s)	20, 47, 68, 73, 95, 127
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	4 cut(s)	14, 51, 196, 361
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.