Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Reverse (-)

22953490 .. 22955090

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCCACCTCAACAGCTGGCAGATCCATTTTCCGGTCATGCGCCGGCCGAAGCTGCGGCTCAGCGGCACGGTTCGCCACTGAAGCGAAAGCTGCTGGCTCACCGTTTCGCATCGGAGCCAAGCAACCTACATCATCTCCCGCTCTCAGGTGTCCTGTTGAATTGAGCTTCTGTGTGGAGTCGATGCTGCCCTACCACACTGCCACAGCTTCGGCTTTGATGACTTGCATGCTTTCCATAACACGCAGCAGTTACGGTTGGCTTCCAGAAGCTTGCAATAATGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.04

Weight (kDa)

8.91

Isoelectric Point (pI)

81.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	3 cut(s)	57, 65, 141
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	2 cut(s)	3, 46
AcuI	CTGAAG	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	33, 147
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	6 cut(s)	17, 54, 92, 168, 209, 272
AluI	AGCT	6 cut(s)	17, 54, 92, 168, 209, 272
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	2 cut(s)	3, 46
ApeKI	GCWGC	4 cut(s)	54, 92, 187, 246
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	93
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	41, 79, 174, 258
BisI	GCNGC	6 cut(s)	55, 58, 66, 93, 188, 247
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	6 cut(s)	56, 59, 67, 94, 189, 248
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	3 cut(s)	120, 174, 274
Bpu1102I	GCTNAGC	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 147
Bse118I	RCCGGY	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	33, 147
BseMII	CTCAG	2 cut(s)	75, 160
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	4 cut(s)	41, 79, 174, 258
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	5, 48
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	34, 45
BslI	CCNNNNNNNGG	2 cut(s)	33, 147
BsnI	GGCC	2 cut(s)	5, 48
Bsp143I	GATC	1 cut(s)	23
Bsp1720I	GCTNAGC	1 cut(s)	61
BspACI	CCGC	3 cut(s)	57, 65, 141
BspANI	GGCC	2 cut(s)	5, 48
BspCNI	CTCAG	2 cut(s)	74, 159
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	1 cut(s)	23
Bst4CI	ACNGT	3 cut(s)	72, 105, 257
BstC8I	GCNNGC	5 cut(s)	19, 46, 97, 230, 274
BstDEI	CTNAG	2 cut(s)	61, 146
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 74, 83, 92
BstNSI	RCATGY	1 cut(s)	232
BstV1I	GCAGC	4 cut(s)	41, 79, 174, 258
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	5, 48
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	78, 198
Cac8I	GCNNGC	5 cut(s)	19, 46, 97, 230, 274
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	44
CviAII	CATG	3 cut(s)	39, 229, 288
DdeI	CTNAG	2 cut(s)	61, 146
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	2 cut(s)	3, 46
EagI	CGGCCG	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	46
Eco52I	CGGCCG	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	3 cut(s)	42, 232, 291
FaiI	YATR	4 cut(s)	40, 230, 239, 289
FatI	CATG	3 cut(s)	38, 228, 287
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	6 cut(s)	55, 58, 66, 93, 188, 247
Fsp4HI	GCNGC	6 cut(s)	55, 58, 66, 93, 188, 247
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	6 cut(s)	55, 58, 66, 93, 188, 247
HaeIII	GGCC	2 cut(s)	5, 48
HapII	CCGG	2 cut(s)	34, 45
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	42, 232, 291
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	34, 45
HphI	GGTGA	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	1 cut(s)	266
HpyCH4III	ACNGT	3 cut(s)	72, 105, 257
HpyCH4V	TGCA	3 cut(s)	228, 276, 287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 74, 83, 92
HpyF3I	CTNAG	2 cut(s)	61, 146
Hsp92II	CATG	3 cut(s)	42, 232, 291
HspAI	GCGC	1 cut(s)	42
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	3, 47, 58, 81, 133, 168, 279
Lsp1109I	GCAGC	4 cut(s)	41, 79, 174, 258
LweI	GCATC	3 cut(s)	120, 174, 274
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	25
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	19
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	289
MroNI	GCCGGC	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	17, 65
MspI	CCGG	2 cut(s)	34, 45
MwoI	GCNNNNNNNGC	4 cut(s)	54, 74, 83, 92
NaeI	GCCGGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	23
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	42, 232, 291
NlaIV	GGNNCC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	6 cut(s)	56, 59, 67, 94, 189, 248
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	17
SatI	GCNGC	6 cut(s)	55, 58, 66, 93, 188, 247
Sau3AI	GATC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	188
SetI	ASST	9 cut(s)	11, 19, 56, 94, 130, 152, 170, 211, 274
SfaNI	GCATC	3 cut(s)	120, 174, 274
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	57, 65, 141
TaaI	ACNGT	3 cut(s)	72, 105, 257
TaqI	TCGA	1 cut(s)	182
TasI	AATT	1 cut(s)	161
TauI	GCSGC	2 cut(s)	60, 68
TscAI	CASTG	2 cut(s)	85, 205
TseI	GCWGC	4 cut(s)	54, 92, 187, 246
TspRI	CASTG	2 cut(s)	85, 205
XceI	RCATGY	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.