Rh2CG314000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001863
Physical Location & Seq
Forward (+)
39720984 .. 39725182
4199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG314000.1

Sequence Viewer

Length: 408 bp
ATGGCCGCCTCAACCGCCGCCAGATCCATTTTCCGGTCCTGCGCCGGCCGAAGCTGCGCCTCAGCGGCCCGGTTCGCCACTGAAGCGAAAGCTGCTCGCTCACCGTTTCGCATCGGAGCCAAGCAACCTACATCATCCCCCGCTCTCAGGTCTCCTGTTGAATTGAGCTTCTGTGTGGAGTCGATGCTGCCCTACCACACTGCCACGGCTTCGGCTTTGATGACTTCCATGCTTTCCATCACTCGCCGCAGTTACGGTTGGCTTCCGGAAGGGAGCTGTCAAAACTCAAGAAGATATGCATTTCTTGCAGCTGCAATTGTCTTTAAGGAAATTGCAACAGCCGCTATGGTTCATACAAATGCAAACAGATATAATGTACAAGATAGGATTATTCTTGAACATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.65

Weight (kDa)

10.15

Isoelectric Point (pI)

77.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 7 cut(s) 6, 15, 18, 65, 141, 247, 342
AclWI GGATC 1 cut(s) 18
AcoI YGGCCR 2 cut(s) 3, 46
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 2 cut(s) 33, 147
AgsI TTSAA 2 cut(s) 161, 398
AluBI AGCT 5 cut(s) 54, 92, 168, 276, 311
AluI AGCT 5 cut(s) 54, 92, 168, 276, 311
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 1 cut(s) 18
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 3 cut(s) 3, 46, 66
ApeKI GCWGC 5 cut(s) 54, 92, 187, 308, 311
AspLEI GCGC 2 cut(s) 44, 59
AspS9I GGNCC 2 cut(s) 36, 67
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 93
AvaII GGWCC 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 61
BbvI GCAGC 5 cut(s) 41, 79, 174, 298, 320
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 222
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 156
BglI GCCNNNNNGGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 36, 67
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 120, 174
Bpu10I CCTNAGC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 2 cut(s) 33, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 147
Bse118I RCCGGY 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 33, 147
BseMII CTCAG 2 cut(s) 75, 160
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 5 cut(s) 41, 79, 174, 298, 320
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 3 cut(s) 5, 48, 68
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 4 cut(s) 34, 45, 70, 266
BslI CCNNNNNNNGG 2 cut(s) 33, 147
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 3 cut(s) 5, 48, 68
Bso31I GGTCTC 1 cut(s) 156
Bsp13I TCCGGA 1 cut(s) 265
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 1 cut(s) 23
BspACI CCGC 7 cut(s) 6, 15, 18, 65, 141, 247, 342
BspANI GGCC 3 cut(s) 5, 48, 68
BspCNI CTCAG 2 cut(s) 74, 159
BspEI TCCGGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 105, 257
BstAPI GCANNNNNTGC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 376
BstC8I GCNNGC 2 cut(s) 46, 97
BstDEI CTNAG 2 cut(s) 61, 146
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 134
BstHHI GCGC 2 cut(s) 44, 59
BstKTI GATC 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 23
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 8 cut(s) 14, 54, 65, 74, 83, 92, 305, 341
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 5 cut(s) 41, 79, 174, 298, 320
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 3 cut(s) 5, 48, 68
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 78, 198
Cac8I GCNNGC 2 cut(s) 46, 97
CfoI GCGC 2 cut(s) 44, 59
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 36, 67
Csp6I GTAC 1 cut(s) 377
CviAII CATG 1 cut(s) 229
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 2 cut(s) 61, 146
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
EaeI YGGCCR 2 cut(s) 3, 46
EagI CGGCCG 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 36
Eco52I CGGCCG 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 301
FaeI CATG 1 cut(s) 232
FaiI YATR 8 cut(s) 230, 297, 347, 354, 372, 402, 404, 406
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 148
FokI GGATG 1 cut(s) 121
GlaI GCGC 2 cut(s) 43, 58
HaeIII GGCC 3 cut(s) 5, 48, 68
HapII CCGG 4 cut(s) 34, 45, 70, 266
HhaI GCGC 2 cut(s) 44, 59
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 2 cut(s) 42, 57
HinP1I GCGC 2 cut(s) 42, 57
HinfI GANTC 1 cut(s) 179
HpaII CCGG 4 cut(s) 34, 45, 70, 266
HphI GGTGA 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 3 cut(s) 266, 288, 395
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 2 cut(s) 105, 257
HpyCH4V TGCA 5 cut(s) 299, 308, 314, 335, 362
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 54, 65, 74, 83, 92, 305, 341
HpyF3I CTNAG 2 cut(s) 61, 146
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 2 cut(s) 42, 57
Kpn2I TCCGGA 1 cut(s) 265
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 116, 273
LpnPI CCDG 8 cut(s) 34, 47, 52, 58, 83, 133, 168, 279
Lsp1109I GCAGC 5 cut(s) 41, 79, 174, 298, 320
LweI GCATC 2 cut(s) 120, 174
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 25
MbiI CCGCTC 1 cut(s) 143
MboI GATC 1 cut(s) 23
MboII GAAGA 1 cut(s) 303
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 1 cut(s) 23
MluCI AATT 3 cut(s) 161, 315, 330
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 19, 70
Mph1103I ATGCAT 1 cut(s) 301
MroI TCCGGA 1 cut(s) 265
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 2 cut(s) 65, 311
MspI CCGG 4 cut(s) 34, 45, 70, 266
MspR9I CCNGG 1 cut(s) 70
MunI CAATTG 1 cut(s) 315
MwoI GCNNNNNNNGC 8 cut(s) 14, 54, 65, 74, 83, 92, 305, 341
NaeI GCCGGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 70
NdeII GATC 1 cut(s) 23
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 301
PdiI GCCGGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 36, 67
PsuI RGATCY 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 1 cut(s) 324
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 2 cut(s) 36, 67
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 70
SetI ASST 7 cut(s) 56, 94, 130, 152, 170, 278, 313
SfaNI GCATC 2 cut(s) 120, 174
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 161, 315, 330
SsiI CCGC 7 cut(s) 6, 15, 18, 65, 141, 247, 342
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 105, 257
TaqI TCGA 1 cut(s) 182
TasI AATT 3 cut(s) 161, 315, 330
TatI WGTACW 1 cut(s) 376
TauI GCSGC 5 cut(s) 8, 20, 68, 249, 344
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 2 cut(s) 85, 205
TseI GCWGC 5 cut(s) 54, 92, 187, 308, 311
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 2 cut(s) 85, 205
VpaK11BI GGWCC 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.