Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001903.1

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Reverse (-)

62160 .. 62617

Gene Structure 458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001903.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggccacctcaaccgccgccagatcttttttccggtcatgcgccggccgaagctgcgcctcagcggcacggttctccactgaagcgaaaactgctcgcccaccgtttcgcatcggagccaagcaacctacatcatctcccgctctgaggtgtcctgttgaattgagcttctgtgtggagtcgatgctgccttaccacactgccacagcttcggctttgatgacttgcatgctttccatcactcgccgcagttacggttggcttccagaaggtgatttcctttactcaattttcattctttcccatttgttatgtttgttttgttccctggcgaatgctgcattgtttggagttccaattctagtgtcaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.4

Weight (kDa)

9.2

Isoelectric Point (pI)

70.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	5 cut(s)	15, 18, 65, 141, 247
AcoI	YGGCCR	2 cut(s)	3, 46
AcuI	CTGAAG	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	3 cut(s)	54, 168, 209
AluI	AGCT	3 cut(s)	54, 168, 209
AoxI	GGCC	2 cut(s)	3, 46
ApeKI	GCWGC	3 cut(s)	54, 187, 338
AspLEI	GCGC	2 cut(s)	44, 59
AsuHPI	GGTGA	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	41, 174, 325
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	329
BfaI	CTAG	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	65
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	6 cut(s)	18, 55, 66, 188, 247, 339
BlsI	GCNGC	6 cut(s)	19, 56, 67, 189, 248, 340
Bme1390I	CCNGG	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	120, 174
Bpu10I	CCTNAGC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	75, 137
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	3 cut(s)	41, 174, 325
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	5, 48
BsiEI	CGRYCG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	34, 45
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	5, 48
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	5 cut(s)	15, 18, 65, 141, 247
BspANI	GGCC	2 cut(s)	5, 48
BspCNI	CTCAG	2 cut(s)	74, 138
BspLI	GGNNCC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	72, 105, 257
BstC8I	GCNNGC	3 cut(s)	46, 97, 230
BstDEI	CTNAG	2 cut(s)	61, 146
BstHHI	GCGC	2 cut(s)	44, 59
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 65, 92, 338
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	41, 174, 325
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	5, 48
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	78, 198
Cac8I	GCNNGC	3 cut(s)	46, 97, 230
CfoI	GCGC	2 cut(s)	44, 59
Cfr10I	RCCGGY	1 cut(s)	44
CviAII	CATG	2 cut(s)	39, 229
CviJI	RGCY	8 cut(s)	5, 48, 54, 119, 168, 209, 215, 262
CviKI_1	RGCY	8 cut(s)	5, 48, 54, 119, 168, 209, 215, 262
DdeI	CTNAG	2 cut(s)	61, 146
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	2 cut(s)	3, 46
EagI	CGGCCG	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	46
Eco52I	CGGCCG	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	42, 232
FaiI	YATR	3 cut(s)	40, 230, 313
FatI	CATG	2 cut(s)	38, 228
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	6 cut(s)	18, 55, 66, 188, 247, 339
Fsp4HI	GCNGC	6 cut(s)	18, 55, 66, 188, 247, 339
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	2 cut(s)	43, 58
GluI	GCNGC	6 cut(s)	18, 55, 66, 188, 247, 339
HaeIII	GGCC	2 cut(s)	5, 48
HapII	CCGG	2 cut(s)	34, 45
HhaI	GCGC	2 cut(s)	44, 59
Hin1II	CATG	2 cut(s)	42, 232
Hin6I	GCGC	2 cut(s)	42, 57
HinP1I	GCGC	2 cut(s)	42, 57
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	34, 45
HphI	GGTGA	1 cut(s)	284
Hpy188I	TCNGA	2 cut(s)	116, 147
Hpy188III	TCNNGA	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	3 cut(s)	72, 105, 257
HpyCH4V	TGCA	2 cut(s)	228, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 65, 92, 338
HpyF3I	CTNAG	2 cut(s)	61, 146
Hsp92II	CATG	2 cut(s)	42, 232
HspAI	GCGC	2 cut(s)	42, 57
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	34, 47, 58, 168, 279, 314, 341
Lsp1109I	GCAGC	3 cut(s)	41, 174, 325
LweI	GCATC	2 cut(s)	120, 174
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	25
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	161, 288, 357, 370
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	3 cut(s)	19, 70, 141
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	34, 45
MspR9I	CCNGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	4 cut(s)	54, 65, 92, 338
NaeI	GCCGGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	23
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	42, 232
NlaIV	GGNNCC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PctI	GAATGC	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	46
PkrI	GCNGC	6 cut(s)	19, 56, 67, 189, 248, 340
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	23
SatI	GCNGC	6 cut(s)	18, 55, 66, 188, 247, 339
Sau3AI	GATC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	329
SetI	ASST	7 cut(s)	11, 56, 130, 152, 170, 211, 274
SfaNI	GCATC	2 cut(s)	120, 174
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	4 cut(s)	161, 288, 357, 370
SsiI	CCGC	5 cut(s)	15, 18, 65, 141, 247
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	72, 105, 257
TaqI	TCGA	1 cut(s)	182
TasI	AATT	4 cut(s)	161, 288, 357, 370
TauI	GCSGC	3 cut(s)	20, 68, 249
TscAI	CASTG	2 cut(s)	85, 205
TseI	GCWGC	3 cut(s)	54, 187, 338
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	2 cut(s)	85, 205
XceI	RCATGY	1 cut(s)	232
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.