Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Reverse (-)

50283327 .. 50285020

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCACCTCAACCGCCAGCAGATCCATTTTCCGGTCATGCGCCTCAGCTGCGCGGTTCGCCACTGAAGCGAAAGCTGCTCGCTCACCGTTTCGCTTAGGAGCCAAGCAACGTACATCATCTCCCGCTTTCAGGTGTCGTGTTGAATTGAGCTTCTGTGTGGAGTCGATGCTGCCCTACCACACTGCCACAGCTTCGGCTTTGATGACTTGCATGCTTTCCATCACTCGCCGCAGTTATGGTTGGCTTCCAGAAGAGCGATCAGCAATAGGCTTGATCACACACTTTGCTAGTGGAGACAACCAGCTCGGAGACAGCGGGCTCTTTAAAAAGTTTATCAACATAAATATGTGCATGCCTGTTTTAAAGCAGGCTACGACAATTCTTGCCAAAACGTGGTTTGCGCTTCAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.14

Weight (kDa)

10.06

Isoelectric Point (pI)

71.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccII	CGCG	1 cut(s)	55
AciI	CCGC	5 cut(s)	15, 55, 126, 232, 318
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	3 cut(s)	33, 132, 396
AgsI	TTSAA	2 cut(s)	146, 410
AluBI	AGCT	5 cut(s)	50, 77, 153, 194, 307
AluI	AGCT	5 cut(s)	50, 77, 153, 194, 307
Alw26I	GTCTC	2 cut(s)	291, 306
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	50, 77, 172
AspLEI	GCGC	3 cut(s)	44, 55, 406
AsuHPI	GGTGA	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	37, 64, 159
BccI	CCATC	1 cut(s)	230
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	291, 306
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	4 cut(s)	51, 78, 173, 232
BlsI	GCNGC	4 cut(s)	52, 79, 174, 233
BmiI	GGNNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	159
Bpu10I	CCTNAGC	2 cut(s)	46, 97
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 132, 396
BseLI	CCNNNNNNNGG	3 cut(s)	33, 132, 396
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	37, 64, 159
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	33, 132, 396
BsmAI	GTCTC	2 cut(s)	291, 306
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	23, 260, 276
BspACI	CCGC	5 cut(s)	15, 55, 126, 232, 318
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	249
BssMI	GATC	3 cut(s)	23, 260, 276
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	6 cut(s)	19, 82, 215, 320, 356, 372
BstDEI	CTNAG	2 cut(s)	46, 97
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	3 cut(s)	44, 55, 406
BstKTI	GATC	3 cut(s)	26, 263, 279
BstMAI	GTCTC	2 cut(s)	291, 306
BstMBI	GATC	3 cut(s)	23, 260, 276
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 59, 68, 77, 410
BstNSI	RCATGY	2 cut(s)	217, 358
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	3 cut(s)	37, 64, 159
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	63, 183
Cac8I	GCNNGC	6 cut(s)	19, 82, 215, 320, 356, 372
CfoI	GCGC	3 cut(s)	44, 55, 406
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	3 cut(s)	39, 214, 355
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	2 cut(s)	46, 97
DpnI	GATC	3 cut(s)	25, 262, 278
DpnII	GATC	3 cut(s)	23, 260, 276
DraI	TTTAAA	2 cut(s)	328, 366
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	3 cut(s)	42, 217, 358
FaiI	YATR	7 cut(s)	40, 215, 240, 344, 350, 356, 415
FatI	CATG	3 cut(s)	38, 213, 354
FauI	CCCGC	2 cut(s)	133, 311
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	4 cut(s)	51, 78, 173, 232
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	4 cut(s)	51, 78, 173, 232
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	3 cut(s)	43, 54, 405
GluI	GCNGC	4 cut(s)	51, 78, 173, 232
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	34
HhaI	GCGC	3 cut(s)	44, 55, 406
Hin1II	CATG	3 cut(s)	42, 217, 358
Hin6I	GCGC	3 cut(s)	42, 53, 404
HinP1I	GCGC	3 cut(s)	42, 53, 404
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	311
Hpy188III	TCNNGA	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	2 cut(s)	112, 395
HpyCH4V	TGCA	2 cut(s)	213, 354
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 59, 68, 77, 410
HpyF3I	CTNAG	2 cut(s)	46, 97
HpySE526I	ACGT	2 cut(s)	112, 395
Hsp92II	CATG	3 cut(s)	42, 217, 358
HspAI	GCGC	3 cut(s)	42, 53, 404
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	23, 260, 276
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	7 cut(s)	31, 47, 118, 264, 317, 356, 372
Lsp1109I	GCAGC	3 cut(s)	37, 64, 159
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	112, 395
MalI	GATC	3 cut(s)	25, 262, 278
MboI	GATC	3 cut(s)	23, 260, 276
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	146, 381
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	19, 55
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	327, 365
MslI	CAYNNNNRTG	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	50, 318
MspI	CCGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	5 cut(s)	50, 59, 68, 77, 410
NdeII	GATC	3 cut(s)	23, 260, 276
NlaIII	CATG	3 cut(s)	42, 217, 358
NlaIV	GGNNCC	1 cut(s)	103
NspI	RCATGY	2 cut(s)	217, 358
PaeI	GCATGC	2 cut(s)	217, 358
PciSI	GCTCTTC	1 cut(s)	249
PflMI	CCANNNNNTGG	1 cut(s)	396
PkrI	GCNGC	4 cut(s)	52, 79, 174, 233
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	327, 365
SatI	GCNGC	4 cut(s)	51, 78, 173, 232
Sau3AI	GATC	3 cut(s)	23, 260, 276
SchI	GAGTC	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	9 cut(s)	11, 52, 79, 115, 137, 155, 196, 309, 398
SfaNI	GCATC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	347
SphI	GCATGC	2 cut(s)	217, 358
Sse9I	AATT	2 cut(s)	146, 381
SsiI	CCGC	5 cut(s)	15, 55, 126, 232, 318
SspMI	CTAG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	2 cut(s)	115, 398
TaqI	TCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	146, 381
TauI	GCSGC	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	327, 365
Tru9I	TTAA	2 cut(s)	327, 365
TscAI	CASTG	2 cut(s)	70, 190
TseI	GCWGC	3 cut(s)	50, 77, 172
TspRI	CASTG	2 cut(s)	70, 190
Van91I	CCANNNNNTGG	1 cut(s)	396
XceI	RCATGY	2 cut(s)	217, 358
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.