Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Forward (+)

47685323 .. 47687633

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG378800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCCACCTCAACAGCCGGCAGATCCATTTTCCGGTCATGCGCCGGCCGAAGCTGCGGCTCAGCGGCACGGTTCGCCACTGAAGCGAAAGCTGCTGGCTCACCGTTTCGCATCGGAGCCAAGCAACCTACATCATCTCCCGCTCTCAGATTCTTGAGGAATGCAGATCCGTCCCTTTCAATCCTGAGCTCATTTCAAACATCATCCGTTTCATTTGGTCACCTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

7.85

Weight (kDa)

11.62

Isoelectric Point (pI)

79.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	3 cut(s)	57, 65, 141
AclWI	GGATC	2 cut(s)	18, 161
AcoI	YGGCCR	2 cut(s)	3, 46
AcuI	CTGAAG	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	180, 197
AluBI	AGCT	3 cut(s)	54, 92, 189
AluI	AGCT	3 cut(s)	54, 92, 189
Alw21I	GWGCWC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	18, 161
AoxI	GGCC	2 cut(s)	3, 46
ApeKI	GCWGC	2 cut(s)	54, 92
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	93, 212
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	41, 79
BisI	GCNGC	4 cut(s)	55, 58, 66, 93
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	4 cut(s)	56, 59, 67, 94
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse118I	RCCGGY	2 cut(s)	17, 44
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	3 cut(s)	75, 160, 176
BseX3I	CGGCCG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	41, 79
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	5, 48
BsiEI	CGRYCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	18, 34, 45
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	5, 48
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	23, 166
Bsp1720I	GCTNAGC	1 cut(s)	61
BspACI	CCGC	3 cut(s)	57, 65, 141
BspANI	GGCC	2 cut(s)	5, 48
BspCNI	CTCAG	3 cut(s)	74, 159, 177
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	18, 161
BsrBI	CCGCTC	1 cut(s)	143
BsrFI	RCCGGY	2 cut(s)	17, 44
BssAI	RCCGGY	2 cut(s)	17, 44
BssMI	GATC	2 cut(s)	23, 166
Bst4CI	ACNGT	2 cut(s)	72, 105
BstC8I	GCNNGC	3 cut(s)	19, 46, 97
BstDEI	CTNAG	3 cut(s)	61, 146, 185
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	26, 169
BstMBI	GATC	2 cut(s)	23, 166
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 74, 83, 92
BstPI	GGTNACC	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	41, 79
BstX2I	RGATCY	2 cut(s)	23, 166
BstYI	RGATCY	2 cut(s)	23, 166
BstZI	CGGCCG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	5, 48
BtsCI	GGATG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	19, 46, 97
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	2 cut(s)	17, 44
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	9 cut(s)	5, 17, 48, 54, 60, 92, 99, 119, 189
CviKI_1	RGCY	9 cut(s)	5, 17, 48, 54, 60, 92, 99, 119, 189
DdeI	CTNAG	3 cut(s)	61, 146, 185
DpnI	GATC	2 cut(s)	25, 168
DpnII	GATC	2 cut(s)	23, 166
EaeI	YGGCCR	2 cut(s)	3, 46
EagI	CGGCCG	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	189
EclXI	CGGCCG	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	191
Eco52I	CGGCCG	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	102
Eco91I	GGTNACC	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	189
EcoO65I	GGTNACC	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	1 cut(s)	42
FaiI	YATR	1 cut(s)	40
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	1 cut(s)	38
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	55, 58, 66, 93
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	4 cut(s)	55, 58, 66, 93
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	4 cut(s)	55, 58, 66, 93
HaeIII	GGCC	2 cut(s)	5, 48
HapII	CCGG	3 cut(s)	18, 34, 45
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	150
HpaII	CCGG	3 cut(s)	18, 34, 45
HphI	GGTGA	2 cut(s)	93, 212
Hpy188I	TCNGA	2 cut(s)	116, 149
Hpy188III	TCNNGA	2 cut(s)	154, 184
HpyCH4III	ACNGT	2 cut(s)	72, 105
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 74, 83, 92
HpyF3I	CTNAG	3 cut(s)	61, 146, 185
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	42
KroI	GCCGGC	2 cut(s)	17, 44
KroNI	GCCGGC	2 cut(s)	19, 46
Kzo9I	GATC	2 cut(s)	23, 166
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	5 cut(s)	31, 47, 58, 81, 197
Lsp1109I	GCAGC	2 cut(s)	41, 79
LweI	GCATC	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	25, 168
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	2 cut(s)	23, 166
MflI	RGATCY	2 cut(s)	23, 166
MhlI	GDGCHC	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	19, 150
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	2 cut(s)	17, 44
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	3 cut(s)	18, 34, 45
Mva1269I	GAATGC	1 cut(s)	166
MwoI	GCNNNNNNNGC	4 cut(s)	54, 74, 83, 92
NaeI	GCCGGC	2 cut(s)	19, 46
NdeII	GATC	2 cut(s)	23, 166
NgoMIV	GCCGGC	2 cut(s)	17, 44
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	218
PctI	GAATGC	1 cut(s)	166
PdiI	GCCGGC	2 cut(s)	19, 46
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	56, 59, 67, 94
Psp124BI	GAGCTC	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	23, 166
SacI	GAGCTC	1 cut(s)	191
SatI	GCNGC	4 cut(s)	55, 58, 66, 93
Sau3AI	GATC	2 cut(s)	23, 166
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	6 cut(s)	11, 56, 94, 130, 191, 225
SfaNI	GCATC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
SsiI	CCGC	3 cut(s)	57, 65, 141
SstI	GAGCTC	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	72, 105
TauI	GCSGC	2 cut(s)	60, 68
TfiI	GAWTC	1 cut(s)	150
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	2 cut(s)	54, 92
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	2 cut(s)	159, 196
TspRI	CASTG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.