Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Reverse (-)

50350712 .. 50351146

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG303500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCCACCTCAACCGCCGGCAGATCCATTTTCCGGTCATGCGCCTCAGCGGCGCGGTTCGCCACTGAAGCGAAAGCTGCTCGCTCACCGTTTCGCGTAGGAGCCAAGCAACGTACATCATCTCCCGCTTTCAGGTGTCGTGTTGAATTGAGCTTCTGTGTGGAGTCGATGCTGCCCTACCACACTGCCACAGCTTCGGCTTTGATGACTTGCATGCTTTCCATCACTCGCCGCAGTTATGGTTGGCTTCCAGAAGGTGATTTCCTTTACTCAAGTTTTGTTATGTTTGTTTTGTTCCCTGGCGAATGCCGCATTGTTTGGAGTTCCAATTCTACTGTCAAAGTAGACTTTTTGGTGCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.43

Weight (kDa)

9.65

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	345
AccII	CGCG	2 cut(s)	55, 96
AciI	CCGC	6 cut(s)	15, 50, 55, 126, 232, 310
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	33, 132
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	77, 153, 194
AluI	AGCT	3 cut(s)	77, 153, 194
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	77, 172
AspLEI	GCGC	2 cut(s)	44, 55
AsuHPI	GGTGA	2 cut(s)	78, 269
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	64, 159
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	300
BglI	GCCNNNNNGGC	1 cut(s)	50
BisI	GCNGC	5 cut(s)	51, 78, 173, 232, 310
BlsI	GCNGC	5 cut(s)	52, 79, 174, 233, 311
Bme1390I	CCNGG	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 132
Bse118I	RCCGGY	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	33, 132
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	64, 159
Bsh1236I	CGCG	2 cut(s)	55, 96
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	18, 34
BslI	CCNNNNNNNGG	2 cut(s)	33, 132
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	6 cut(s)	15, 50, 55, 126, 232, 310
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	2 cut(s)	55, 96
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	90, 337, 363
BstC8I	GCNNGC	3 cut(s)	19, 82, 215
BstDEI	CTNAG	1 cut(s)	46
BstFNI	CGCG	2 cut(s)	55, 96
BstHHI	GCGC	2 cut(s)	44, 55
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 59, 68, 77, 309
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	298
BstUI	CGCG	2 cut(s)	55, 96
BstV1I	GCAGC	2 cut(s)	64, 159
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	63, 183
Cac8I	GCNNGC	3 cut(s)	19, 82, 215
CfoI	GCGC	2 cut(s)	44, 55
Cfr10I	RCCGGY	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	39, 214
CviJI	RGCY	7 cut(s)	5, 77, 104, 153, 194, 200, 247
CviKI_1	RGCY	7 cut(s)	5, 77, 104, 153, 194, 200, 247
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	2 cut(s)	42, 217
FaiI	YATR	4 cut(s)	40, 215, 240, 284
FatI	CATG	2 cut(s)	38, 213
FauI	CCCGC	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	5 cut(s)	51, 78, 173, 232, 310
Fsp4HI	GCNGC	5 cut(s)	51, 78, 173, 232, 310
GlaI	GCGC	2 cut(s)	43, 54
GluI	GCNGC	5 cut(s)	51, 78, 173, 232, 310
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	18, 34
HhaI	GCGC	2 cut(s)	44, 55
Hin1II	CATG	2 cut(s)	42, 217
Hin6I	GCGC	2 cut(s)	42, 53
HinP1I	GCGC	2 cut(s)	42, 53
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	18, 34
HphI	GGTGA	2 cut(s)	78, 269
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	3 cut(s)	90, 337, 363
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	213, 358
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 59, 68, 77, 309
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	42, 217
HspAI	GCGC	2 cut(s)	42, 53
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	6 cut(s)	31, 47, 118, 264, 285, 312
Lsp1109I	GCAGC	2 cut(s)	64, 159
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	112
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	146, 328
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	19, 55
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	2 cut(s)	18, 34
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	2 cut(s)	55, 96
MwoI	GCNNNNNNNGC	5 cut(s)	50, 59, 68, 77, 309
NaeI	GCCGGC	1 cut(s)	19
NdeII	GATC	1 cut(s)	23
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	42, 217
NlaIV	GGNNCC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	217
PaeI	GCATGC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	311
PdiI	GCCGGC	1 cut(s)	19
PkrI	GCNGC	5 cut(s)	52, 79, 174, 233, 311
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SatI	GCNGC	5 cut(s)	51, 78, 173, 232, 310
Sau3AI	GATC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	7 cut(s)	11, 79, 115, 137, 155, 196, 259
SfaNI	GCATC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	2 cut(s)	146, 328
SsiI	CCGC	6 cut(s)	15, 50, 55, 126, 232, 310
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	90, 337, 363
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	146, 328
TauI	GCSGC	3 cut(s)	53, 234, 312
TscAI	CASTG	2 cut(s)	70, 190
TseI	GCWGC	2 cut(s)	77, 172
TspRI	CASTG	2 cut(s)	70, 190
XceI	RCATGY	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.