Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001863

Physical Location & Seq

Genomic Coordinates Reverse (-)

49695292 .. 49697577

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCCACCTCAACCGCCAGCAGATCCATTTTCCGGTCATGCGCCTCAGCTGCGCGGTTCGCCACTGAAGCGAAAGCTGCTCGCTCACCGTTTCGCTTAGGAGCCAAGCAACGTACATCATCTCCCGCTTTCAGGTGTCGTGTTGAATTGAGCTTCTGTGTGGAGTCGATGCTGCCCTACCACACTGCCACAGCTTCGGCTTTGATGACTTGCATGCTTTCCATCACTCGCCGCAGCTATGGTTGGCTTCCAGAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

9.4

Weight (kDa)

10.42

Isoelectric Point (pI)

79.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585 AT2G20585
fragaria_vesca	FvH4_3g43343
prunus_persica	Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1 Prupe.3G134600_v2.0.a1
pyrus_communis	pycom09g16090
rosa_chinensis	RchiOBHm_Chr2g0127311 RchiOBHm_Chr7g0223421 RchiOBHm_Chr7g0223571
rosa_laevigata	RLG00000012437
rosa_multiflora	Rmu_sc0001903.1_g000015 Rmu_sc0007408.1_g000015 Rmu_sc0007523.1_g000003 Rmu_sc0010766.1_g000004 Rmu_ssc0000018.1_g000049
rosa_roxburghii	Rroxscaffold_2G00116340 Rroxscaffold_3G00235550 Rroxscaffold_3G00235820 Rroxscaffold_7G00180490
rosa_rugosa	Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275100 Rorug02G0275200 Rorug02G0275200
rosa_samantha	Rh2AG326300 Rh2BG335800 Rh2CG314000 Rh2DG353500 Rh6AG304500 Rh6BG310500 Rh6CG318600 Rh6DG303500 Rh7CG378800 Rh7DG355700 Rh7DG356800
rosa_wichuraiana	Rw2G026470 Rw6G026350 Rw7G030620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	55
AciI	CCGC	4 cut(s)	15, 55, 126, 232
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	33, 132
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	5 cut(s)	50, 77, 153, 194, 237
AluI	AGCT	5 cut(s)	50, 77, 153, 194, 237
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	50, 77, 172, 234
AspLEI	GCGC	2 cut(s)	44, 55
AsuHPI	GGTGA	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	46
BbvI	GCAGC	4 cut(s)	37, 64, 159, 246
BccI	CCATC	1 cut(s)	230
BisI	GCNGC	5 cut(s)	51, 78, 173, 232, 235
BlsI	GCNGC	5 cut(s)	52, 79, 174, 233, 236
BmiI	GGNNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	159
Bpu10I	CCTNAGC	2 cut(s)	46, 97
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 132
BseLI	CCNNNNNNNGG	2 cut(s)	33, 132
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	37, 64, 159, 246
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	33, 132
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	4 cut(s)	15, 55, 126, 232
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	18
BssMI	GATC	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	19, 82, 215
BstDEI	CTNAG	2 cut(s)	46, 97
BstFNI	CGCG	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	44, 55
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 59, 68, 77
BstNSI	RCATGY	1 cut(s)	217
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	37, 64, 159, 246
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	63, 183
Cac8I	GCNNGC	3 cut(s)	19, 82, 215
CfoI	GCGC	2 cut(s)	44, 55
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	39, 214
CviJI	RGCY	9 cut(s)	5, 50, 77, 104, 153, 194, 200, 237, 247
CviKI_1	RGCY	9 cut(s)	5, 50, 77, 104, 153, 194, 200, 237, 247
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	2 cut(s)	46, 97
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	87
FaeI	CATG	2 cut(s)	42, 217
FaiI	YATR	3 cut(s)	40, 215, 240
FatI	CATG	2 cut(s)	38, 213
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	5 cut(s)	51, 78, 173, 232, 235
Fsp4HI	GCNGC	5 cut(s)	51, 78, 173, 232, 235
GlaI	GCGC	2 cut(s)	43, 54
GluI	GCNGC	5 cut(s)	51, 78, 173, 232, 235
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	34
HhaI	GCGC	2 cut(s)	44, 55
Hin1II	CATG	2 cut(s)	42, 217
Hin6I	GCGC	2 cut(s)	42, 53
HinP1I	GCGC	2 cut(s)	42, 53
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	1 cut(s)	78
Hpy188III	TCNNGA	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 59, 68, 77
HpyF3I	CTNAG	2 cut(s)	46, 97
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	42, 217
HspAI	GCGC	2 cut(s)	42, 53
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	3 cut(s)	31, 47, 118
Lsp1109I	GCAGC	4 cut(s)	37, 64, 159, 246
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	112
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MflI	RGATCY	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	19, 55
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	4 cut(s)	50, 59, 68, 77
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	42, 217
NlaIV	GGNNCC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	217
PaeI	GCATGC	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	52, 79, 174, 233, 236
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SatI	GCNGC	5 cut(s)	51, 78, 173, 232, 235
Sau3AI	GATC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	173
SetI	ASST	8 cut(s)	11, 52, 79, 115, 137, 155, 196, 239
SfaNI	GCATC	1 cut(s)	159
SphI	GCATGC	1 cut(s)	217
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	4 cut(s)	15, 55, 126, 232
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	167
TasI	AATT	1 cut(s)	146
TauI	GCSGC	1 cut(s)	234
TscAI	CASTG	2 cut(s)	70, 190
TseI	GCWGC	4 cut(s)	50, 77, 172, 234
TspRI	CASTG	2 cut(s)	70, 190
XceI	RCATGY	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.