Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

46892399 .. 46896392

Gene Structure 3994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG326200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCTTCCTTATTCAAGGATCAAGCCAAGCTTTCACAATATCGGGATAGAAGATTTCCTGGATCGCAAGAGGAATTTGAACAAGCACTTCTGGCATCAACGACTGTTTATATTGGGAATATGTCTTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTCTCTCGTGCTGGAGAAATTAAGAAGATAATTATGGGCTTGGATAAGAATACAAAAACGCCTTGTGGCTTTTGTTTTGTCCTATTCTATTCTCGAGAAGATACTGAGGATGCTGTAAAATATATAAGCGGGACTATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTCCAAGAAGGAAGGCAATGGGGCCGAGGGCGAAGTGGTGGGCAGGTTCGCGATGAATATCGTACTGATTATGATCCAGATATCCTTTTAGGTGGATATGGTAAATTAGTTCAACGGGAGTTGGAAGCTCAGAGAACACTTGTAGATTATGGTACTGGATCATTGGGTTCTTTCCCTCCAGTCATGCCACCTCCTCACTATGGTAGACAAGGGGGAGGCAATAATCATGGCGGTTCTCATCGGCATGGTAGAGATTTTCATCGGAAACGACAACGTGATGATGACCGCCAGTCATATGAGACCTCAAAGAGAAACTCAAATTATGAACCGCGGAAGAACTCTGATCTTGACTCTAGACCGGAGAAAAATCCACGGTTTCGTGAGAGTGGTGACTCTGATGATGAGGAAGAAGATGGCAAAAAGCGGCGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

256

Amino Acids

29.6

Weight (kDa)

6.26

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	1.2e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	541
AccII	CGCG	2 cut(s)	387, 667
AciI	CCGC	6 cut(s)	288, 567, 622, 665, 667, 760
AclWI	GGATC	4 cut(s)	27, 70, 404, 502
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	2 cut(s)	400, 490
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	3 cut(s)	16, 80, 449
AhdI	GACNNNNNGTC	1 cut(s)	625
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	31, 157, 464
AluI	AGCT	3 cut(s)	31, 157, 464
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	4 cut(s)	27, 70, 404, 502
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	737
AvaI	CYCGRG	1 cut(s)	252
BauI	CACGAG	1 cut(s)	165
BccI	CCATC	1 cut(s)	743
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	1 cut(s)	690
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	1 cut(s)	761
BlsI	GCNGC	1 cut(s)	762
Bme1390I	CCNGG	1 cut(s)	60
BmeRI	GACNNNNNGTC	1 cut(s)	625
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	104, 259
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpmI	CTGGAG	2 cut(s)	192, 498
BsaBI	GATNNNNATC	3 cut(s)	393, 408, 594
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	361, 665, 707
BsaWI	WCCGGW	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	3 cut(s)	496, 515, 625
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	3 cut(s)	393, 408, 594
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	3 cut(s)	361, 665, 707
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	3 cut(s)	393, 408, 594
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	255, 479
BseNI	ACTGG	3 cut(s)	496, 515, 625
BseRI	GAGGAG	1 cut(s)	519
Bsh1236I	CGCG	2 cut(s)	387, 667
BshFI	GGCC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	695
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	629
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	19, 62, 304, 409, 494, 679
Bsp68I	TCGCGA	1 cut(s)	387
BspACI	CCGC	6 cut(s)	288, 567, 622, 665, 667, 760
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	256, 478
BspFNI	CGCG	2 cut(s)	387, 667
BspLI	GGNNCC	1 cut(s)	359
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	4 cut(s)	27, 70, 404, 502
BspQI	GCTCTTC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	496, 515, 625
BssECI	CCNNGG	3 cut(s)	361, 665, 707
BssMI	GATC	6 cut(s)	19, 62, 304, 409, 494, 679
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	106, 711
Bst6I	CTCTTC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	264, 465
BstDSI	CCRYGG	2 cut(s)	665, 707
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	2 cut(s)	387, 667
BstKTI	GATC	6 cut(s)	22, 65, 307, 412, 497, 682
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	6 cut(s)	19, 62, 304, 409, 494, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstUI	CGCG	2 cut(s)	387, 667
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	2 cut(s)	665, 707
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	274
BtuMI	TCGCGA	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	358
Cfr42I	CCGCGG	1 cut(s)	668
Csp6I	GTAC	2 cut(s)	399, 489
CviAII	CATG	3 cut(s)	520, 563, 581
CviJI	RGCY	8 cut(s)	5, 26, 31, 157, 198, 228, 360, 464
CviKI_1	RGCY	8 cut(s)	5, 26, 31, 157, 198, 228, 360, 464
CviQI	GTAC	2 cut(s)	399, 489
DdeI	CTNAG	2 cut(s)	264, 465
DpnI	GATC	6 cut(s)	21, 64, 306, 411, 496, 681
DpnII	GATC	6 cut(s)	19, 62, 304, 409, 494, 679
DriI	GACNNNNNGTC	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	629
Eco32I	GATATC	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	418
FaeI	CATG	3 cut(s)	523, 566, 584
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	519, 562, 580
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	631
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	761
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	1 cut(s)	761
FspBI	CTAG	1 cut(s)	690
GluI	GCNGC	1 cut(s)	761
GsuI	CTGGAG	2 cut(s)	192, 498
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	695
Hin1II	CATG	3 cut(s)	523, 566, 584
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	336, 686, 728
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	4 cut(s)	468, 600, 679, 733
Hpy188III	TCNNGA	9 cut(s)	44, 252, 254, 299, 386, 413, 683, 690, 716
Hpy8I	GTNNAC	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	338, 342
HpyCH4III	ACNGT	2 cut(s)	106, 711
HpyCH4IV	ACGT	1 cut(s)	610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	264, 465
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	3 cut(s)	523, 566, 584
KspI	CCGCGG	1 cut(s)	668
Kzo9I	GATC	6 cut(s)	19, 62, 304, 409, 494, 679
LguI	GCTCTTC	1 cut(s)	135
LweI	GCATC	2 cut(s)	104, 259
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	1 cut(s)	610
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	6 cut(s)	21, 64, 306, 411, 496, 681
MboI	GATC	6 cut(s)	19, 62, 304, 409, 494, 679
MboII	GAAGA	7 cut(s)	63, 152, 196, 269, 682, 755, 758
MluCI	AATT	5 cut(s)	74, 177, 189, 440, 655
MlyI	GAGTC	2 cut(s)	680, 722
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	9 cut(s)	64, 259, 356, 522, 537, 540, 545, 649, 733
MseI	TTAA	2 cut(s)	180, 769
MslI	CAYNNNNRTG	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	2 cut(s)	387, 667
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	6 cut(s)	19, 62, 304, 409, 494, 679
NlaIII	CATG	3 cut(s)	523, 566, 584
NlaIV	GGNNCC	1 cut(s)	359
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	725
NruI	TCGCGA	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	336
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	762
PleI	GAGTC	2 cut(s)	680, 722
PpsI	GAGTC	2 cut(s)	680, 722
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	358
RruI	TCGCGA	1 cut(s)	387
RsaI	GTAC	2 cut(s)	400, 490
RsaNI	GTAC	2 cut(s)	399, 489
RseI	CAYNNNNRTG	1 cut(s)	579
SacII	CCGCGG	1 cut(s)	668
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	180, 769
SatI	GCNGC	1 cut(s)	761
Sau3AI	GATC	6 cut(s)	19, 62, 304, 409, 494, 679
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	680, 722
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	9 cut(s)	33, 159, 384, 430, 466, 529, 613, 641, 769
SfaNI	GCATC	2 cut(s)	104, 259
Sfr274I	CTCGAG	1 cut(s)	252
Sfr303I	CCGCGG	1 cut(s)	668
SgrBI	CCGCGG	1 cut(s)	668
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	5 cut(s)	74, 177, 189, 440, 655
SsiI	CCGC	6 cut(s)	288, 567, 622, 665, 667, 760
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	2 cut(s)	106, 711
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	253
TasI	AATT	5 cut(s)	74, 177, 189, 440, 655
TauI	GCSGC	1 cut(s)	763
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	2 cut(s)	180, 769
Tru9I	TTAA	2 cut(s)	180, 769
TseFI	GTSAC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	3 cut(s)	405, 584, 675
XapI	RAATTY	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	689
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.