Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

28361286 .. 28365689

Gene Structure 4404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1234600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTTCGTTGTTTAAGGACCAATCAAAGCTTTCCCAGTACCGGGATAGAAGGTTTCCGGGGTCACAGGAGGAATTTGAACAAGCGCTCTTGGCATCGACAACGGTTTACATTGGAAATATGTCCTTCTATACGACAGAAGAGCAAGTTTACGAGCTCTTCTCTCGCGCTGGGGAAATCAAGAAGATAATTATGGGCTTGGATAAGAACACGAAAACGCCTTGTGGTTTTTGTTTTGTCCTATACTATTCTCGAGAGGATACTGAGGATGCTGTAAAGTATATTAGCGGGACTATTCTTGATGATCGCCCTATTCGTGTGGATTTTGATTGGGGATTTCAAGAGGGAAGGCAATGGGGTCGTGGGCGAAGTGGTGGACAGGTGCGCGATGAGTATCGTACTGATTATGATCCTGATATCCTTTTGATTAGTGGATATGGTAAGTTAGTTCAAAAAGAGTTGGAAGCTCAAAGAACGCTTGTTGATTATGGAACTGGATCATTGGGCTCTTTCCCACCAGTCATGCCACCTCAATATGGTAGACATGGTGGAGGTCCGAATCATGGGGGTACTCATCGGCCTCGTAGAGATTATCCTAGGAAGCGGTACCGAGATGATGACCGCCAATCATATGACGACTCAAAGAGAAACTCGGATTATGAATCGCAGAAGAACTCCGATCACGAATCTAGACCAGAGAAAAATCCACGGTTTCGTGAGAGTGGTGACTCAGATGACGATGAAGATGAGCAAAAGCGGCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

256

Amino Acids

29.59

Weight (kDa)

5.43

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	2.4e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	541
AccII	CGCG	2 cut(s)	168, 387
AciI	CCGC	4 cut(s)	288, 604, 622, 757
AclWI	GGATC	2 cut(s)	404, 505
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	4 cut(s)	41, 400, 571, 608
AfeI	AGCGCT	1 cut(s)	87
AfiI	CCNNNNNNNGG	4 cut(s)	42, 43, 536, 563
AgsI	TTSAA	3 cut(s)	80, 341, 452
AluBI	AGCT	4 cut(s)	31, 157, 467, 764
AluI	AGCT	4 cut(s)	31, 157, 467, 764
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	404, 505
Ama87I	CYCGRG	1 cut(s)	252
Aor51HI	AGCGCT	1 cut(s)	87
AoxI	GGCC	1 cut(s)	578
ApoI	RAATTY	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	606
AspA2I	CCTAGG	1 cut(s)	596
AspLEI	GCGC	3 cut(s)	88, 170, 387
AspS9I	GGNCC	2 cut(s)	19, 554
AsuC2I	CCSGG	2 cut(s)	44, 60
AsuHPI	GGTGA	1 cut(s)	737
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	19, 554
AvrII	CCTAGG	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	606
BanII	GRGCYC	2 cut(s)	159, 509
Bbv12I	GWGCWC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	44, 60
BfaI	CTAG	2 cut(s)	597, 690
BfoI	RGCGCY	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	758
BlnI	CCTAGG	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	759
Bme1390I	CCNGG	2 cut(s)	44, 60
Bme18I	GGWCC	2 cut(s)	19, 554
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	19, 554
BmiI	GGNNCC	1 cut(s)	608
BmrFI	CCNGG	2 cut(s)	44, 60
BmrI	ACTGGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	104, 259
BmuI	ACTGGG	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpuMI	CCSGG	2 cut(s)	44, 60
BsaBI	GATNNNNATC	2 cut(s)	393, 408
BsaJI	CCNNGG	3 cut(s)	59, 596, 707
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 43, 536, 563
Bse1I	ACTGG	3 cut(s)	37, 499, 518
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	2 cut(s)	393, 408
BseDI	CCNNGG	3 cut(s)	59, 596, 707
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	2 cut(s)	393, 408
BseLI	CCNNNNNNNGG	4 cut(s)	42, 43, 536, 563
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	255, 744
BseNI	ACTGG	3 cut(s)	37, 499, 518
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	2 cut(s)	168, 387
BshFI	GGCC	1 cut(s)	580
BshNI	GGYRCC	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	43, 59
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	4 cut(s)	42, 43, 536, 563
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	159, 509
Bsp143I	GATC	4 cut(s)	304, 409, 497, 679
BspACI	CCGC	4 cut(s)	288, 604, 622, 757
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	2 cut(s)	256, 743
BspFNI	CGCG	2 cut(s)	168, 387
BspLI	GGNNCC	1 cut(s)	608
BspPI	GGATC	2 cut(s)	404, 505
BspQI	GCTCTTC	2 cut(s)	135, 164
BspT107I	GGYRCC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	37, 499, 518
BssECI	CCNNGG	3 cut(s)	59, 596, 707
BssMI	GATC	4 cut(s)	304, 409, 497, 679
BssT1I	CCWWGG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	106, 711
Bst6I	CTCTTC	2 cut(s)	135, 164
BstC8I	GCNNGC	1 cut(s)	762
BstDEI	CTNAG	2 cut(s)	264, 730
BstDSI	CCRYGG	1 cut(s)	707
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	2 cut(s)	168, 387
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	3 cut(s)	88, 170, 387
BstKTI	GATC	4 cut(s)	307, 412, 500, 682
BstMBI	GATC	4 cut(s)	304, 409, 497, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 757
BstSCI	CCNGG	2 cut(s)	42, 58
BstUI	CGCG	2 cut(s)	168, 387
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	580
BtgI	CCRYGG	1 cut(s)	707
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	762
CfoI	GCGC	3 cut(s)	88, 170, 387
Cfr13I	GGNCC	2 cut(s)	19, 554
Csp6I	GTAC	4 cut(s)	40, 399, 570, 607
CviAII	CATG	3 cut(s)	523, 545, 563
CviJI	RGCY	8 cut(s)	5, 31, 157, 198, 467, 507, 580, 764
CviKI_1	RGCY	8 cut(s)	5, 31, 157, 198, 467, 507, 580, 764
CviQI	GTAC	4 cut(s)	40, 399, 570, 607
DdeI	CTNAG	2 cut(s)	264, 730
DpnI	GATC	4 cut(s)	306, 411, 499, 681
DpnII	GATC	4 cut(s)	304, 409, 497, 679
Eam1104I	CTCTTC	2 cut(s)	135, 164
EarI	CTCTTC	2 cut(s)	135, 164
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	596
Eco24I	GRGCYC	2 cut(s)	159, 509
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	19, 554
Eco47III	AGCGCT	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	596
EcoT38I	GRGCYC	2 cut(s)	159, 509
ErhI	CCWWGG	1 cut(s)	596
FaeI	CATG	3 cut(s)	526, 548, 566
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	522, 544, 562
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	631
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	1 cut(s)	758
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	2 cut(s)	159, 509
Fsp4HI	GCNGC	1 cut(s)	758
FspBI	CTAG	2 cut(s)	597, 690
GlaI	GCGC	3 cut(s)	87, 169, 386
GluI	GCNGC	1 cut(s)	758
GsaI	CCCAGC	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	2 cut(s)	43, 59
HhaI	GCGC	3 cut(s)	88, 170, 387
Hin1II	CATG	3 cut(s)	526, 548, 566
Hin6I	GCGC	3 cut(s)	86, 168, 385
HinP1I	GCGC	3 cut(s)	86, 168, 385
HindIII	AAGCTT	2 cut(s)	29, 762
HinfI	GANTC	5 cut(s)	559, 638, 662, 686, 728
HpaII	CCGG	2 cut(s)	43, 59
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	4 cut(s)	109, 151, 377, 542
Hpy188I	TCNGA	4 cut(s)	558, 655, 679, 733
Hpy188III	TCNNGA	9 cut(s)	181, 252, 254, 299, 341, 413, 683, 690, 716
Hpy8I	GTNNAC	4 cut(s)	109, 151, 377, 542
HpyAV	CCTTC	3 cut(s)	45, 136, 342
HpyCH4III	ACNGT	2 cut(s)	106, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 757
HpyF3I	CTNAG	2 cut(s)	264, 730
Hsp92II	CATG	3 cut(s)	526, 548, 566
HspAI	GCGC	3 cut(s)	86, 168, 385
KpnI	GGTACC	1 cut(s)	610
Kzo9I	GATC	4 cut(s)	304, 409, 497, 679
LguI	GCTCTTC	2 cut(s)	135, 164
LweI	GCATC	2 cut(s)	104, 259
MaeI	CTAG	2 cut(s)	597, 690
MaeIII	GTNAC	2 cut(s)	63, 725
MalI	GATC	4 cut(s)	306, 411, 499, 681
MboI	GATC	4 cut(s)	304, 409, 497, 679
MboII	GAAGA	5 cut(s)	151, 152, 196, 682, 755
MhlI	GDGCHC	2 cut(s)	159, 509
MluCI	AATT	2 cut(s)	74, 189
MlyI	GAGTC	2 cut(s)	632, 722
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	7 cut(s)	64, 250, 259, 337, 540, 545, 591
MseI	TTAA	2 cut(s)	15, 766
MspI	CCGG	2 cut(s)	43, 59
MspR9I	CCNGG	2 cut(s)	44, 60
MvnI	CGCG	2 cut(s)	168, 387
MwoI	GCNNNNNNNGC	2 cut(s)	92, 757
NciI	CCSGG	2 cut(s)	44, 60
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	4 cut(s)	304, 409, 497, 679
NlaIII	CATG	3 cut(s)	526, 548, 566
NlaIV	GGNNCC	1 cut(s)	608
NmuCI	GTSAC	2 cut(s)	63, 725
PaeR7I	CTCGAG	1 cut(s)	252
PciSI	GCTCTTC	2 cut(s)	135, 164
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	559, 662, 686
PkrI	GCNGC	1 cut(s)	759
PleI	GAGTC	2 cut(s)	632, 722
PpsI	GAGTC	2 cut(s)	632, 722
Psp124BI	GAGCTC	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	608
PspPI	GGNCC	2 cut(s)	19, 554
RsaI	GTAC	4 cut(s)	41, 400, 571, 608
RsaNI	GTAC	4 cut(s)	40, 399, 570, 607
SacI	GAGCTC	1 cut(s)	159
SapI	GCTCTTC	2 cut(s)	135, 164
SaqAI	TTAA	2 cut(s)	15, 766
SatI	GCNGC	1 cut(s)	758
Sau3AI	GATC	4 cut(s)	304, 409, 497, 679
Sau96I	GGNCC	2 cut(s)	19, 554
SchI	GAGTC	2 cut(s)	632, 722
ScrFI	CCNGG	2 cut(s)	44, 60
SduI	GDGCHC	2 cut(s)	159, 509
SetI	ASST	8 cut(s)	33, 56, 159, 384, 469, 532, 556, 766
SfaNI	GCATC	2 cut(s)	104, 259
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	19, 554
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	2 cut(s)	74, 189
SsiI	CCGC	4 cut(s)	288, 604, 622, 757
SspMI	CTAG	2 cut(s)	597, 690
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	42, 58
StyI	CCWWGG	1 cut(s)	596
TaaI	ACNGT	2 cut(s)	106, 711
TaqI	TCGA	2 cut(s)	98, 253
TasI	AATT	2 cut(s)	74, 189
TauI	GCSGC	1 cut(s)	760
TfiI	GAWTC	3 cut(s)	559, 662, 686
Tru1I	TTAA	2 cut(s)	15, 766
Tru9I	TTAA	2 cut(s)	15, 766
TseFI	GTSAC	2 cut(s)	63, 725
Tsp45I	GTSAC	2 cut(s)	63, 725
TspDTI	ATGAA	2 cut(s)	675, 756
VpaK11BI	GGWCC	2 cut(s)	19, 554
XapI	RAATTY	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	689
XhoI	CTCGAG	1 cut(s)	252
XmaJI	CCTAGG	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	2 cut(s)	597, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.