Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039747.1

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

254 .. 1480

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039747.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgtctttttatacaacagaagagcaagtttatgagcttttctctcgtgctggagaaattaagaagataattatgggcttggataagaatacaaaaacgccttgtggcttttgttttgtcctattctattctcgagaagatactgaggatgctgtaaaatatataagcgggactattcttgatgatcgtcctattcgtgtggattttgattggggattccaagaaggaaggcaatggggccgagggcgaagtggcgggcaggtggatgattctgccttcgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

94

Amino Acids

10.82

Weight (kDa)

4.73

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	250
Acc36I	ACCTGC	1 cut(s)	250
AciI	CCGC	2 cut(s)	168, 255
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	132
BauI	CACGAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	239
BmsI	GCATC	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	154, 271
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	168, 255
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	154, 271
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	154, 271
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	238
CviJI	RGCY	4 cut(s)	37, 78, 108, 240
CviKI_1	RGCY	4 cut(s)	37, 78, 108, 240
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	132
FaiI	YATR	5 cut(s)	12, 33, 74, 162, 164
FaqI	GGGAC	1 cut(s)	184
FauI	CCCGC	2 cut(s)	161, 248
FokI	GGATG	2 cut(s)	161, 278
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	240
HinfI	GANTC	2 cut(s)	216, 269
Hpy188III	TCNNGA	3 cut(s)	132, 134, 179
HpyAV	CCTTC	2 cut(s)	218, 222
HpyF3I	CTNAG	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	184
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	2 cut(s)	36, 245
LweI	GCATC	1 cut(s)	139
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	3 cut(s)	32, 76, 149
MluCI	AATT	2 cut(s)	57, 69
MnlI	CCTC	2 cut(s)	139, 236
MseI	TTAA	2 cut(s)	60, 283
NdeII	GATC	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	239
NmeAIII	GCCGAG	1 cut(s)	266
PaeR7I	CTCGAG	1 cut(s)	132
PaqCI	CACCTGC	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	216, 269
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	60, 283
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	238
SetI	ASST	2 cut(s)	39, 264
SfaNI	GCATC	1 cut(s)	139
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	57, 69
SsiI	CCGC	2 cut(s)	168, 255
TaqI	TCGA	1 cut(s)	133
TasI	AATT	2 cut(s)	57, 69
TfiI	GAWTC	2 cut(s)	216, 269
Tru1I	TTAA	2 cut(s)	60, 283
Tru9I	TTAA	2 cut(s)	60, 283
XhoI	CTCGAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.