Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Reverse (-)

16178406 .. 16179130

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTTCCTTGTTTAAGGAGCAATCGAAGCTTTCGCAGTACCGGGACAGACGGTTTCCCGGTTCACAGGAGGAATTTGAACAAGCCCTCCTGGCATCAACCACTGTTTACATTGGGAATATGTCCTTCTATACGACAGAAGAGCAAGTTTATGAGCTCTTCTCTCGCGCCGGAGAAATTAAGAAGATAATTATGGGCTTGGATAAGAATACAAAGACGCCTTGTGGTTTTTGTTTTGTTTTATACTATTCTCGAGAGGATACTGAGGATGCTGTCAAATATATAAGCGGGACTATTCTTGATGATCGCCCTATTCGTGTGGATTTCGACTGGGGATTTCAAGAGGGAAGGCAATGGGGTCGTGGGCGAAGTGGTGGACAGGTGCGTGATGAATATCGTACTGATTATGATCCTGATATCCTTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

144

Amino Acids

16.76

Weight (kDa)

4.86

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	36 - 106	6.8e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	2 cut(s)	41, 400
AgsI	TTSAA	2 cut(s)	80, 341
AjnI	CCWGG	1 cut(s)	90
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	2 cut(s)	31, 157
AluI	AGCT	2 cut(s)	31, 157
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	252
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	44, 60
AvaI	CYCGRG	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	159
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	44, 60
BfuI	GTATCC	1 cut(s)	253
BglI	GCCNNNNNGGC	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	44, 60, 92
BmeT110I	CYCGRG	1 cut(s)	252
BmrFI	CCNGG	3 cut(s)	44, 60, 92
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	104, 259
BmuI	ACTGGG	1 cut(s)	340
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpuMI	CCSGG	2 cut(s)	44, 60
BsaBI	GATNNNNATC	2 cut(s)	393, 408
BsaHI	GRCGYC	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse1I	ACTGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	2 cut(s)	393, 408
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	2 cut(s)	393, 408
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	43, 60, 171
BslFI	GGGAC	2 cut(s)	59, 304
BsmFI	GGGAC	2 cut(s)	59, 304
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	304, 409
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	2 cut(s)	135, 164
BsrDI	GCAATG	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	304, 409
BssNI	GRCGYC	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	54, 106
Bst6I	CTCTTC	2 cut(s)	135, 164
BstACI	GRCGYC	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	307, 412
BstMBI	GATC	2 cut(s)	304, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 92
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	3 cut(s)	42, 58, 90
BstUI	CGCG	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	102
CfoI	GCGC	1 cut(s)	170
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	40, 399
CviJI	RGCY	5 cut(s)	5, 31, 86, 157, 198
CviKI_1	RGCY	5 cut(s)	5, 31, 86, 157, 198
CviQI	GTAC	2 cut(s)	40, 399
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	306, 411
DpnII	GATC	2 cut(s)	304, 409
Eam1104I	CTCTTC	2 cut(s)	135, 164
EarI	CTCTTC	2 cut(s)	135, 164
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	159
FaiI	YATR	8 cut(s)	122, 132, 153, 194, 244, 282, 284, 408
FaqI	GGGAC	2 cut(s)	59, 304
FauI	CCCGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	159
GlaI	GCGC	1 cut(s)	169
HapII	CCGG	3 cut(s)	43, 60, 171
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	218
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	29
HpaII	CCGG	3 cut(s)	43, 60, 171
Hpy166II	GTNNAC	3 cut(s)	65, 109, 377
Hpy188III	TCNNGA	5 cut(s)	252, 254, 299, 341, 413
Hpy8I	GTNNAC	3 cut(s)	65, 109, 377
HpyAV	CCTTC	2 cut(s)	136, 342
HpyCH4III	ACNGT	2 cut(s)	54, 106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 92
HpyF3I	CTNAG	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	218
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	304, 409
LguI	GCTCTTC	2 cut(s)	135, 164
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	9 cut(s)	53, 56, 73, 77, 104, 184, 316, 365, 426
LweI	GCATC	2 cut(s)	104, 259
MalI	GATC	2 cut(s)	306, 411
MboI	GATC	2 cut(s)	304, 409
MboII	GAAGA	3 cut(s)	151, 152, 196
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	74, 177, 189
MnlI	CCTC	5 cut(s)	64, 98, 250, 259, 337
MseI	TTAA	2 cut(s)	15, 180
MspI	CCGG	3 cut(s)	43, 60, 171
MspR9I	CCNGG	3 cut(s)	44, 60, 92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	28, 92
NciI	CCSGG	2 cut(s)	44, 60
NdeII	GATC	2 cut(s)	304, 409
PaeR7I	CTCGAG	1 cut(s)	252
PciSI	GCTCTTC	2 cut(s)	135, 164
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
RsaI	GTAC	2 cut(s)	41, 400
RsaNI	GTAC	2 cut(s)	40, 399
SacI	GAGCTC	1 cut(s)	159
SapI	GCTCTTC	2 cut(s)	135, 164
SaqAI	TTAA	2 cut(s)	15, 180
Sau3AI	GATC	2 cut(s)	304, 409
ScrFI	CCNGG	3 cut(s)	44, 60, 92
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	3 cut(s)	33, 159, 384
SfaNI	GCATC	2 cut(s)	104, 259
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	74, 177, 189
SsiI	CCGC	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	42, 58, 90
TaaI	ACNGT	2 cut(s)	54, 106
TaqI	TCGA	3 cut(s)	26, 253, 327
TasI	AATT	3 cut(s)	74, 177, 189
Tru1I	TTAA	2 cut(s)	15, 180
Tru9I	TTAA	2 cut(s)	15, 180
TscAI	CASTG	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.