Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013536

Physical Location & Seq

Genomic Coordinates Forward (+)

14098691 .. 14104669

Gene Structure 5979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTCTTTGTTCAAGGATCAATCGAAGCTTTCACAATATCGGGATAGAAGATTTCCTGGACCACAGGAGGAATTTGAACAAGCACTCCTGGCATCAACGACTGTTTATATTGGGAATATGTCATTCTACACAACAGAAGAGCAAGTTTATGAGCTTTTTTCTCGAGCTGGAGAGATTAAGAAGATAATTATGGGCTTGGATAAAAATACCAAAACGCCTTGTGGTTTTTGTTTTGTCCTATACTACTCTCGAGAGGACACTGAGGATGCTGTAAAATATATTAGCGGGACTATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTCCAAGAAGGAAGGCAATGGGGTCGAGGCCGAAGTGGTGGACAGGTGCGCGATGAATATCGTACTGATTATGATCCTGGCAGAGGTGGATATGGTAAATTAGTTCAACGAGAGTTAGAAGCTCAGAGAACGCTAGTAGATTATGGTACTGGATCTTTGGGCACTTTCCCTCCAGTCATGCCACCTCACTATGGTAGACATGGTGGAGGCCATAATCATGGGGGTACTCATCGGCCTGGTAGAGGTGACTATCATCGGAAACGACATCGAGATGATGACCGCCACTCATATGAGAGCTCAAAGAGAAACTCGGATTATGAATCCCGAAAGAACTCTGATCACGAATCTAGACCAGAGAAAAATCCACGGTTTCGTGAGAGTGGCGACTCTGATGATGAAGAAGATGAGCAAAAGCGACAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000339 GO:0000375 GO:0000377 GO:0000394 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005845 GO:0005846 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0032991 GO:0034470 GO:0034518 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

254

Amino Acids

29.33

Weight (kDa)

6.33

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44200 AT5G44200
fragaria_vesca	FvH4_6g26630
malus_domestica	MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica	Prupe.3G134700_v2.0.a1
pyrus_communis	pycom09g16080 pycom17g23780
rosa_chinensis	RchiOBHm_Chr2g0127331
rosa_laevigata	RLG00000018966
rosa_multiflora	Rmu_sc0039747.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116350
rosa_rugosa	Rorug02G0275100
rosa_samantha	Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana	Rw2G026460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	532
AccII	CGCG	1 cut(s)	387
AciI	CCGC	2 cut(s)	288, 616
AclWI	GGATC	3 cut(s)	27, 404, 496
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	3 cut(s)	400, 484, 562
AfiI	CCNNNNNNNGG	3 cut(s)	419, 527, 578
AgsI	TTSAA	3 cut(s)	16, 80, 443
AjnI	CCWGG	4 cut(s)	58, 90, 412, 571
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	5 cut(s)	31, 157, 170, 458, 633
AluI	AGCT	5 cut(s)	31, 157, 170, 458, 633
Alw21I	GWGCWC	1 cut(s)	635
AlwI	GGATC	3 cut(s)	27, 404, 496
Ama87I	CYCGRG	2 cut(s)	165, 252
AoxI	GGCC	3 cut(s)	364, 544, 569
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	593
AvaI	CYCGRG	2 cut(s)	165, 252
AvaII	GGWCC	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	635
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	4 cut(s)	60, 92, 414, 573
BclI	TGATCA	1 cut(s)	673
BfaI	CTAG	2 cut(s)	470, 684
Bme1390I	CCNGG	4 cut(s)	60, 92, 414, 573
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	2 cut(s)	165, 252
BmgT120I	GGNCC	1 cut(s)	62
BmrFI	CCNGG	4 cut(s)	60, 92, 414, 573
BmsI	GCATC	2 cut(s)	104, 259
BpmI	CTGGAG	2 cut(s)	192, 492
BsaBI	GATNNNNATC	2 cut(s)	393, 408
BsaJI	CCNNGG	1 cut(s)	701
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 490, 520
Bsc4I	CCNNNNNNNGG	3 cut(s)	419, 527, 578
Bse1I	ACTGG	2 cut(s)	490, 509
Bse3DI	GCAATG	1 cut(s)	359
Bse8I	GATNNNNATC	2 cut(s)	393, 408
BseBI	CCWGG	4 cut(s)	60, 92, 414, 573
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	2 cut(s)	393, 408
BseLI	CCNNNNNNNGG	3 cut(s)	419, 527, 578
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	255, 473
BseNI	ACTGG	2 cut(s)	490, 509
BseSI	GKGCMC	1 cut(s)	500
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	366, 546, 571
BsiHKAI	GWGCWC	1 cut(s)	635
BsiHKCI	CYCGRG	2 cut(s)	165, 252
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	419, 527, 578
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	366, 546, 571
BsoBI	CYCGRG	2 cut(s)	165, 252
Bsp1286I	GDGCHC	2 cut(s)	500, 635
Bsp143I	GATC	5 cut(s)	19, 304, 409, 488, 673
BspACI	CCGC	2 cut(s)	288, 616
BspANI	GGCC	3 cut(s)	366, 546, 571
BspCNI	CTCAG	2 cut(s)	256, 472
BspFNI	CGCG	1 cut(s)	387
BspPI	GGATC	3 cut(s)	27, 404, 496
BspQI	GCTCTTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	490, 509
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	5 cut(s)	19, 304, 409, 488, 673
Bst2UI	CCWGG	4 cut(s)	60, 92, 414, 573
Bst4CI	ACNGT	2 cut(s)	106, 705
Bst6I	CTCTTC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	264, 459
BstDSI	CCRYGG	1 cut(s)	701
BstENI	CCTNNNNNAGG	2 cut(s)	417, 576
BstF5I	GGATG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	5 cut(s)	22, 307, 412, 491, 676
BstMBI	GATC	5 cut(s)	19, 304, 409, 488, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	4 cut(s)	60, 92, 414, 573
BstSCI	CCNGG	4 cut(s)	58, 90, 412, 571
BstSLI	GKGCMC	1 cut(s)	500
BstUI	CGCG	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	488
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	366, 546, 571
BtgI	CCRYGG	1 cut(s)	701
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	261
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	399, 483, 561
CviAII	CATG	3 cut(s)	514, 536, 554
CviQI	GTAC	3 cut(s)	399, 483, 561
DdeI	CTNAG	2 cut(s)	264, 459
DpnI	GATC	5 cut(s)	21, 306, 411, 490, 675
DpnII	GATC	5 cut(s)	19, 304, 409, 488, 673
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	633
Eco88I	CYCGRG	2 cut(s)	165, 252
EcoICRI	GAGCTC	1 cut(s)	633
EcoNI	CCTNNNNNAGG	2 cut(s)	417, 576
EcoRII	CCWGG	4 cut(s)	58, 90, 412, 571
EcoT38I	GRGCYC	1 cut(s)	635
FaeI	CATG	3 cut(s)	517, 539, 557
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	3 cut(s)	513, 535, 553
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	532
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	635
FspBI	CTAG	2 cut(s)	470, 684
GlaI	GCGC	1 cut(s)	386
GsuI	CTGGAG	2 cut(s)	192, 492
HaeIII	GGCC	3 cut(s)	366, 546, 571
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	3 cut(s)	517, 539, 557
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	4 cut(s)	336, 656, 680, 722
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	2 cut(s)	377, 533
Hpy188I	TCNGA	5 cut(s)	462, 594, 649, 673, 727
Hpy8I	GTNNAC	2 cut(s)	377, 533
HpyAV	CCTTC	2 cut(s)	338, 342
HpyCH4III	ACNGT	2 cut(s)	106, 705
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	264, 459
Hsp92II	CATG	3 cut(s)	517, 539, 557
HspAI	GCGC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	5 cut(s)	19, 304, 409, 488, 673
LguI	GCTCTTC	1 cut(s)	135
LweI	GCATC	2 cut(s)	104, 259
MaeI	CTAG	2 cut(s)	470, 684
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	5 cut(s)	21, 306, 411, 490, 675
MboI	GATC	5 cut(s)	19, 304, 409, 488, 673
MboII	GAAGA	5 cut(s)	63, 152, 196, 746, 749
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	2 cut(s)	500, 635
MluCI	AATT	3 cut(s)	74, 189, 434
MlyI	GAGTC	1 cut(s)	716
MnlI	CCTC	9 cut(s)	64, 250, 259, 356, 413, 516, 531, 536, 572
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	3 cut(s)	552, 606, 624
MspR9I	CCNGG	4 cut(s)	60, 92, 414, 573
MvaI	CCWGG	4 cut(s)	60, 92, 414, 573
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	5 cut(s)	19, 304, 409, 488, 673
NlaIII	CATG	3 cut(s)	517, 539, 557
NmuCI	GTSAC	1 cut(s)	581
PaeR7I	CTCGAG	2 cut(s)	165, 252
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	336, 656, 680
PfoI	TCCNGGA	1 cut(s)	58
PleI	GAGTC	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	716
Psp124BI	GAGCTC	1 cut(s)	635
Psp6I	CCWGG	4 cut(s)	58, 90, 412, 571
PspGI	CCWGG	4 cut(s)	58, 90, 412, 571
PspPI	GGNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	488
RsaI	GTAC	3 cut(s)	400, 484, 562
RsaNI	GTAC	3 cut(s)	399, 483, 561
RseI	CAYNNNNRTG	3 cut(s)	552, 606, 624
SacI	GAGCTC	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	180
Sau3AI	GATC	5 cut(s)	19, 304, 409, 488, 673
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	4 cut(s)	60, 92, 414, 573
SduI	GDGCHC	2 cut(s)	500, 635
SetI	ASST	9 cut(s)	33, 159, 172, 384, 424, 460, 523, 583, 635
SfaNI	GCATC	2 cut(s)	104, 259
Sfr274I	CTCGAG	2 cut(s)	165, 252
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	2 cut(s)	165, 252
SmiMI	CAYNNNNRTG	3 cut(s)	552, 606, 624
SmlI	CTYRAG	2 cut(s)	165, 252
SmoI	CTYRAG	2 cut(s)	165, 252
Sse9I	AATT	3 cut(s)	74, 189, 434
SsiI	CCGC	2 cut(s)	288, 616
SspMI	CTAG	2 cut(s)	470, 684
SstI	GAGCTC	1 cut(s)	635
StyD4I	CCNGG	4 cut(s)	58, 90, 412, 571
TaaI	ACNGT	2 cut(s)	106, 705
TaqI	TCGA	5 cut(s)	26, 166, 253, 361, 604
TasI	AATT	3 cut(s)	74, 189, 434
TfiI	GAWTC	3 cut(s)	336, 656, 680
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	3 cut(s)	405, 669, 747
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	62
XagI	CCTNNNNNAGG	2 cut(s)	417, 576
XapI	RAATTY	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	683
XhoI	CTCGAG	2 cut(s)	165, 252
XmiI	GTMKAC	1 cut(s)	532
XspI	CTAG	2 cut(s)	470, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.