RchiOBHm_Chr2g0127331

Nuclear cap-binding protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013536
Physical Location & Seq
Forward (+)
42173142 .. 42175685
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49921

Sequence Viewer

Length: 405 bp
ATGGCTTCCTTATTCAAGGATCAAGCCAAGCTTTCACAATATCGGGATAGAAGATTTCCTGGATCGCAAGAGGAATTTGAACAAGCACTTCTGGCATCAACGATTGTTTATATTGGGAATATGTCTTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTCTCTCGTGCTGGAGAAATTAAGAAGATAATTATGGGCTTGGATAAGAATACAAAAACGCCTTGTGGCTTTTGTTTTGTCCTATTCTATTCTCGAGAAGATACTGAGGATGCTGTAAAATATATAAGCGGGACTATTCTTGATGATCGTCCTATTCGTGTGGATTTTGATTGGGGATTCCAAGAAGGAAGGCAATGGGGCCGAGGGCGAAGTGGCGGGCAGGTGGATGATTCTGCCTTCGTTTAA

Protein Analysis

134

Amino Acids

15.41

Weight (kDa)

4.9

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 106 2.9e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013536)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44200 AT5G44200
fragaria_vesca FvH4_6g26630
malus_domestica MD09G1242300.v1.1 MD17G1234600.v1.1
prunus_persica Prupe.3G134700_v2.0.a1
pyrus_communis pycom09g16080 pycom17g23780
rosa_chinensis RchiOBHm_Chr2g0127331
rosa_laevigata RLG00000018966
rosa_multiflora Rmu_sc0039747.1_g000001
rosa_roxburghii Rroxscaffold_2G00116350
rosa_rugosa Rorug02G0275100
rosa_samantha Rh2AG326200 Rh2BG335700 Rh2CG313900 Rh2DG353400
rosa_wichuraiana Rw2G026460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
Acc36I ACCTGC 1 cut(s) 370
AciI CCGC 2 cut(s) 288, 375
AclWI GGATC 2 cut(s) 27, 70
AcsI RAATTY 1 cut(s) 74
AgsI TTSAA 2 cut(s) 16, 80
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 2 cut(s) 31, 157
AluI AGCT 2 cut(s) 31, 157
AlwI GGATC 2 cut(s) 27, 70
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 1 cut(s) 358
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 252
BauI CACGAG 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 370
Bme1390I CCNGG 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 104, 259
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpmI CTGGAG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 361
Bse3DI GCAATG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 274, 391
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 1 cut(s) 360
BsoBI CYCGRG 1 cut(s) 252
Bsp143I GATC 3 cut(s) 19, 62, 304
BspACI CCGC 2 cut(s) 288, 375
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 359
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 2 cut(s) 27, 70
BspQI GCTCTTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 3 cut(s) 19, 62, 304
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 274, 391
BstKTI GATC 3 cut(s) 22, 65, 307
BstMBI GATC 3 cut(s) 19, 62, 304
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 360
BtsCI GGATG 2 cut(s) 274, 391
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 358
CviJI RGCY 7 cut(s) 5, 26, 31, 157, 198, 228, 360
CviKI_1 RGCY 7 cut(s) 5, 26, 31, 157, 198, 228, 360
DdeI CTNAG 1 cut(s) 264
DpnI GATC 3 cut(s) 21, 64, 306
DpnII GATC 3 cut(s) 19, 62, 304
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 58
FaiI YATR 7 cut(s) 111, 122, 132, 153, 194, 282, 284
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 1 cut(s) 304
FauI CCCGC 2 cut(s) 281, 368
FokI GGATG 2 cut(s) 281, 398
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 2 cut(s) 336, 389
Hpy188III TCNNGA 4 cut(s) 44, 252, 254, 299
HpyAV CCTTC 2 cut(s) 338, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 264
Kzo9I GATC 3 cut(s) 19, 62, 304
LguI GCTCTTC 1 cut(s) 135
LpnPI CCDG 5 cut(s) 45, 72, 77, 156, 365
LweI GCATC 2 cut(s) 104, 259
MalI GATC 3 cut(s) 21, 64, 306
MboI GATC 3 cut(s) 19, 62, 304
MboII GAAGA 4 cut(s) 63, 152, 196, 269
MluCI AATT 3 cut(s) 74, 177, 189
MnlI CCTC 3 cut(s) 64, 259, 356
MseI TTAA 2 cut(s) 180, 403
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 3 cut(s) 19, 62, 304
NlaIV GGNNCC 1 cut(s) 359
NmeAIII GCCGAG 1 cut(s) 386
PaeR7I CTCGAG 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PfeI GAWTC 2 cut(s) 336, 389
PfoI TCCNGGA 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 358
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 180, 403
Sau3AI GATC 3 cut(s) 19, 62, 304
Sau96I GGNCC 1 cut(s) 358
ScrFI CCNGG 1 cut(s) 60
SetI ASST 3 cut(s) 33, 159, 384
SfaNI GCATC 2 cut(s) 104, 259
Sfr274I CTCGAG 1 cut(s) 252
SlaI CTCGAG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 3 cut(s) 74, 177, 189
SsiI CCGC 2 cut(s) 288, 375
StyD4I CCNGG 1 cut(s) 58
TaqI TCGA 1 cut(s) 253
TasI AATT 3 cut(s) 74, 177, 189
TfiI GAWTC 2 cut(s) 336, 389
Tru1I TTAA 2 cut(s) 180, 403
Tru9I TTAA 2 cut(s) 180, 403
XapI RAATTY 1 cut(s) 74
XhoI CTCGAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.