AT5G45320

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014216
Physical Location & Seq
Reverse (-)
18362111 .. 18363181
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45320.1

Sequence Viewer

Length: 597 bp
ATGCCCAGATTGACTTCTCGTCATGGTACCAGTCCTTTCATCTGGTGTGCAGCCATCATTTGTGCCATAATCTCTATTGTTGTAATCGTTGGTGGCATTATAGTCTTCGTTGGTTACCTGGTCATTCATCCTCGAGTTCCCATCATTAGTGTCGCGGATGCTCACCTCGACTTCTTAAAGTATGATATAGTTGGAGTTTTGCAAACGCAGTTAACGATTGTGATTCGCGTAGAGAATGATAACGCTAAGGCTCATGCGTTGTTTGATGAAACTGAGTTCAAGCTAAGCTATGAAGGCAAACCTATTGCGATTTTAAAAGCGCCTGAGTTTGAAGTTGTTAAAGAGAAATCAATGTTCCTTCCTTACTTGGTTCAGTCATATCCAATACCATTGAATCCAACAATGATGCAAGCTGTAGACTATGCGGTTAAAAAAGATGTTATTACTTTCGAGCTCAAAGGTGGCTCAAGAACTCGGTGGCGAGTCGGACCATTAGGATCGGTTAAGTTTGAGTGTAACCTTAGCTGTCAGCTTAGGTTTAGACCTTCTGATCATAGTTACATTCCATCTCCTTGCACCTCTGCTCATAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

198

Amino Acids

22.17

Weight (kDa)

8.79

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 417
AccII CGCG 2 cut(s) 155, 228
AciI CCGC 2 cut(s) 155, 425
AclWI GGATC 1 cut(s) 505
AfaI GTAC 1 cut(s) 28
AgsI TTSAA 3 cut(s) 280, 332, 394
AhdI GACNNNNNGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 6 cut(s) 283, 288, 413, 454, 525, 532
AluI AGCT 6 cut(s) 283, 288, 413, 454, 525, 532
Alw21I GWGCWC 1 cut(s) 456
AlwI GGATC 1 cut(s) 505
Ama87I CYCGRG 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 50
Asp718I GGTACC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 488
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 62, 149, 574
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 1 cut(s) 550
BfmI CTRYAG 1 cut(s) 414
BfoI RGCGCY 1 cut(s) 323
BisI GCNGC 1 cut(s) 51
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 488
BmeRI GACNNNNNGTC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 148, 396
BpiI GAAGAC 1 cut(s) 97
Bpu10I CCTNAGC 3 cut(s) 246, 521, 533
Bpu1102I GCTNAGC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 2 cut(s) 127, 163
BseMII CTCAG 2 cut(s) 264, 315
BseNI ACTGG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 2 cut(s) 155, 228
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 2 cut(s) 497, 550
Bsp1720I GCTNAGC 1 cut(s) 284
BspACI CCGC 2 cut(s) 155, 425
BspCNI CTCAG 2 cut(s) 265, 316
BspFNI CGCG 2 cut(s) 155, 228
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 1 cut(s) 505
BspT107I GGYRCC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 30
BssMI GATC 2 cut(s) 497, 550
Bst2UI CCWGG 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 6 cut(s) 246, 273, 284, 324, 521, 533
BstEII GGTNACC 1 cut(s) 113
BstF5I GGATG 2 cut(s) 127, 163
BstFNI CGCG 2 cut(s) 155, 228
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 2 cut(s) 500, 553
BstMBI GATC 2 cut(s) 497, 550
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNI CCWGG 1 cut(s) 119
BstPI GGTNACC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 414
BstUI CGCG 2 cut(s) 155, 228
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 127, 163
Cac8I GCNNGC 1 cut(s) 411
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 488
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 27
CviAII CATG 2 cut(s) 23, 254
CviJI RGCY 9 cut(s) 53, 251, 283, 288, 413, 454, 465, 525, 532
CviKI_1 RGCY 9 cut(s) 53, 251, 283, 288, 413, 454, 465, 525, 532
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 6 cut(s) 246, 273, 284, 324, 521, 533
DpnI GATC 2 cut(s) 499, 552
DpnII GATC 2 cut(s) 497, 550
DraI TTTAAA 1 cut(s) 315
DriI GACNNNNNGTC 1 cut(s) 18
Eam1105I GACNNNNNGTC 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 488
Eco53kI GAGCTC 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 132
Eco91I GGTNACC 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 454
EcoO65I GGTNACC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 456
FaeI CATG 2 cut(s) 26, 257
FatI CATG 2 cut(s) 22, 253
FbaI TGATCA 1 cut(s) 550
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 114, 170
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 1 cut(s) 51
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 323
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 26, 257
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 3 cut(s) 223, 394, 483
HpaI GTTAAC 1 cut(s) 213
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 213, 418
Hpy188I TCNGA 2 cut(s) 488, 550
Hpy188III TCNNGA 1 cut(s) 468
Hpy8I GTNNAC 2 cut(s) 213, 418
HpyAV CCTTC 3 cut(s) 287, 368, 555
HpyCH4V TGCA 4 cut(s) 50, 202, 409, 576
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpyF3I CTNAG 6 cut(s) 246, 273, 284, 324, 521, 533
Hsp92II CATG 2 cut(s) 26, 257
HspAI GCGC 1 cut(s) 320
KpnI GGTACC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 550
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 497, 550
LpnPI CCDG 6 cut(s) 19, 28, 43, 104, 131, 336
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 148, 396
MabI ACCWGGT 1 cut(s) 117
MaeIII GTNAC 3 cut(s) 113, 515, 557
MalI GATC 2 cut(s) 499, 552
MboI GATC 2 cut(s) 497, 550
MboII GAAGA 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 456
MlyI GAGTC 1 cut(s) 492
MmeI TCCRAC 3 cut(s) 172, 422, 466
MnlI CCTC 3 cut(s) 141, 176, 589
MseI TTAA 6 cut(s) 176, 212, 314, 339, 429, 504
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 2 cut(s) 155, 228
MwoI GCNNNNNNNGC 1 cut(s) 294
NdeII GATC 2 cut(s) 497, 550
NlaIII CATG 2 cut(s) 26, 257
NlaIV GGNNCC 1 cut(s) 28
PaeR7I CTCGAG 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PfeI GAWTC 2 cut(s) 223, 394
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 488
PspXI VCTCGAGB 1 cut(s) 132
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SacI GAGCTC 1 cut(s) 456
SaqAI TTAA 6 cut(s) 176, 212, 314, 339, 429, 504
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 497, 550
Sau96I GGNCC 1 cut(s) 488
SchI GAGTC 1 cut(s) 492
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 456
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 2 cut(s) 148, 396
SfcI CTRYAG 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 488
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 132, 466
SmoI CTYRAG 2 cut(s) 132, 466
SsiI CCGC 2 cut(s) 155, 425
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 117
TaqI TCGA 3 cut(s) 133, 168, 450
TfiI GAWTC 2 cut(s) 223, 394
Tru1I TTAA 6 cut(s) 176, 212, 314, 339, 429, 504
Tru9I TTAA 6 cut(s) 176, 212, 314, 339, 429, 504
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 4 cut(s) 28, 116, 282, 306
VpaK11BI GGWCC 1 cut(s) 488
XhoI CTCGAG 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.