Rroxscaffold_3G00244620

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014216
Physical Location & Seq
Reverse (-)
37465145 .. 37466163
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00244620.1

Sequence Viewer

Length: 603 bp
ATGCCGAGAAAACTAATCCATGGTCCACAGAGACGCACACACCCTTTGGTTTGGCTTGCAGCCATCATCTGCACCATCATCTCCATTGCTGTGATCATTGTGGGCATCGTGGTTTTCGTGGGCTACATGGTCATCAACCCCAGGGTACCCTTCATCAAGGTCACCACAGCACACCTTGACAAGTTCGAAAGCGATGCGACGAGCCTGCTAGACACTGCAATCACCATTATTGTGAGGGCTGAGAACGACAACACCAAGGCGCATGCAAGCTTCTCGGACACGAGCTTCACTCTCAGCTTCCAAGGGATGAACATAGCAAAGTTGGTGGCGTACCCTTTTGAGGTGAGGAAGAATAGTTCTGTGGATTTTAACTATGTGGTGGAGTCCTCGTCCATACCATTGAGTTCTGAGCAGGTGGATCAAGTGGACAATTCTTTGAAGAGAGATAGAATCAGTTTCGATTTGAAGGGGAATGTTAGAGCAAGGTGGAGAGTATGGCTGATTGGATCAATTAGGTTCTGGGGTCATTTGAACTGTCGACTTAACTTTCATGCATTGAATGGGAGCTACATATATTCACCTTGTAGCTCCAGGCCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

200

Amino Acids

22.57

Weight (kDa)

9.67

Isoelectric Point (pI)

27.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 538
AclWI GGATC 2 cut(s) 426, 514
AfaI GTAC 2 cut(s) 147, 332
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 4 cut(s) 439, 466, 532, 559
AjnI CCWGG 2 cut(s) 140, 590
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 5 cut(s) 270, 285, 297, 567, 588
AluI AGCT 5 cut(s) 270, 285, 297, 567, 588
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 2 cut(s) 426, 514
AoxI GGCC 1 cut(s) 593
ApeKI GCWGC 1 cut(s) 59
Asp718I GGTACC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 4 cut(s) 154, 214, 355, 570
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 145
BauI CACGAG 1 cut(s) 280
BbvI GCAGC 1 cut(s) 71
BccI CCATC 2 cut(s) 71, 83
BcgI CGANNNNNNTGC 6 cut(s) 176, 187, 210, 221, 255, 289
BciT130I CCWGG 2 cut(s) 142, 592
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 142, 592
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 142, 592
BmsI GCATC 2 cut(s) 114, 184
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 1 cut(s) 574
Bpu14I TTCGAA 1 cut(s) 186
BsaJI CCNNGG 5 cut(s) 19, 140, 141, 255, 301
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 142, 592
BseDI CCNNGG 5 cut(s) 19, 140, 141, 255, 301
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 3 cut(s) 231, 307, 399
BseXI GCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 595
BshNI GGYRCC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 595
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 3 cut(s) 93, 418, 506
Bsp19I CCATGG 1 cut(s) 19
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 3 cut(s) 232, 306, 400
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 426, 514
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 84
BssECI CCNNGG 5 cut(s) 19, 140, 141, 255, 301
BssMI GATC 3 cut(s) 93, 418, 506
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 3 cut(s) 19, 255, 301
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 142, 592
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 57, 206, 264, 268
BstDEI CTNAG 4 cut(s) 240, 293, 408, 597
BstDSI CCRYGG 1 cut(s) 19
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 3 cut(s) 96, 421, 509
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 3 cut(s) 93, 418, 506
BstNI CCWGG 2 cut(s) 142, 592
BstNSI RCATGY 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 140, 590
BstV1I GCAGC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 595
BtgI CCRYGG 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 312
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 4 cut(s) 57, 206, 264, 268
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 146, 331
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 4 cut(s) 20, 127, 263, 551
CviQI GTAC 2 cut(s) 146, 331
DdeI CTNAG 4 cut(s) 240, 293, 408, 597
DpnI GATC 3 cut(s) 95, 420, 508
DpnII GATC 3 cut(s) 93, 418, 506
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 3 cut(s) 19, 255, 301
Eco147I AGGCCT 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 140, 590
EcoT14I CCWWGG 3 cut(s) 19, 255, 301
EcoT22I ATGCAT 1 cut(s) 556
ErhI CCWWGG 3 cut(s) 19, 255, 301
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 4 cut(s) 23, 130, 266, 554
FatI CATG 4 cut(s) 19, 126, 262, 550
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 574
HaeIII GGCC 1 cut(s) 595
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 262
Hin1II CATG 4 cut(s) 23, 130, 266, 554
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 539
HindII GTYRAC 1 cut(s) 539
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 2 cut(s) 383, 450
HphI GGTGA 4 cut(s) 154, 214, 355, 570
Hpy166II GTNNAC 3 cut(s) 26, 427, 539
Hpy188I TCNGA 2 cut(s) 277, 409
Hpy8I GTNNAC 3 cut(s) 26, 427, 539
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 160, 460
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4V TGCA 5 cut(s) 59, 72, 218, 266, 554
HpyF3I CTNAG 4 cut(s) 240, 293, 408, 597
Hsp92II CATG 4 cut(s) 23, 130, 266, 554
HspAI GCGC 1 cut(s) 260
KpnI GGTACC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 93, 418, 506
LmnI GCTCC 2 cut(s) 564, 593
LpnPI CCDG 6 cut(s) 127, 154, 218, 398, 505, 577
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 2 cut(s) 114, 184
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 95, 420, 508
MboI GATC 3 cut(s) 93, 418, 506
MboII GAAGA 2 cut(s) 361, 451
MluCI AATT 2 cut(s) 430, 510
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 4 cut(s) 228, 334, 339, 397
Mph1103I ATGCAT 1 cut(s) 556
MseI TTAA 2 cut(s) 369, 543
MslI CAYNNNNRTG 2 cut(s) 89, 230
MspR9I CCNGG 2 cut(s) 142, 592
MvaI CCWGG 2 cut(s) 142, 592
NcoI CCATGG 1 cut(s) 19
NdeII GATC 3 cut(s) 93, 418, 506
NlaIII CATG 4 cut(s) 23, 130, 266, 554
NlaIV GGNNCC 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 1 cut(s) 266
NspV TTCGAA 1 cut(s) 186
PaeI GCATGC 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 403
PasI CCCWGGG 1 cut(s) 141
PceI AGGCCT 1 cut(s) 595
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 140, 590
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 2 cut(s) 140, 590
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 2 cut(s) 147, 332
RsaNI GTAC 2 cut(s) 146, 331
RseI CAYNNNNRTG 2 cut(s) 89, 230
SalI GTCGAC 1 cut(s) 537
SaqAI TTAA 2 cut(s) 369, 543
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 3 cut(s) 93, 418, 506
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 142, 592
SfaNI GCATC 2 cut(s) 114, 184
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 89, 230
SphI GCATGC 1 cut(s) 266
Sse9I AATT 2 cut(s) 430, 510
SseBI AGGCCT 1 cut(s) 595
SspMI CTAG 1 cut(s) 209
StuI AGGCCT 1 cut(s) 595
StyD4I CCNGG 2 cut(s) 140, 590
StyI CCWWGG 3 cut(s) 19, 255, 301
TaaI ACNGT 1 cut(s) 536
TaqI TCGA 3 cut(s) 186, 459, 538
TasI AATT 2 cut(s) 430, 510
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 2 cut(s) 369, 543
Tru9I TTAA 2 cut(s) 369, 543
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 142, 323, 539
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 538
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.