Rw7G024470

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014216
Physical Location & Seq
Forward (+)
30106810 .. 30107939
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024470.1

Sequence Viewer

Length: 603 bp
ATGCCGAGAAAACTAATCCATGGTCCACGGAGAGGCACACACCCTTTGGTTTGGCTTGCAGCCATCATCTGCACCATCATCTCCATTGCTGTGATCATTGTGGGCATCGTGGTTTTCGTGGGCTACATGGTCATCCACCCCAGGGTACCCTTTATCAAGGTCACCACAGCACACCTTGACAAGTTCGAAAGCGACGCGACGAGCCTGCTAGACACTGCAATCACCATTGTTGTGAGGGCTGAGAACGACAACACCAAGGCGCATGCAAGCTTCTCGGACACGAGCTTCACTCTCAGCTTCCAAGGGATGAACATAGCAAAGTTGGTGGCGTACCCTTTTGAGGTGAGGAAGAATAGTTCTGTGGATTTTAACTATGTGGTGGAGTCCTCGTCCATACCATTGAGTTCTGAGCAGGTGGATCAAGTGGACAATTCTTTGAAGAGAGATAGAATCAGTTTCGATTTGAAGGGGAATGTTAGAGCAAGGTGGAGAGTATGGCTGCTCGGATCAATTAGGTTCTGGGGTCATTTGAACTGTCGACTTAACTTTCATGCATTGAATGGGAGCTACATATACTCACCTTGTAGCTCCAGGCCGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

200

Amino Acids

22.43

Weight (kDa)

9.58

Isoelectric Point (pI)

25.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 538
AccII CGCG 1 cut(s) 197
AclWI GGATC 2 cut(s) 426, 514
AfaI GTAC 2 cut(s) 147, 332
AfiI CCNNNNNNNGG 3 cut(s) 32, 142, 340
AgsI TTSAA 4 cut(s) 439, 466, 532, 559
AjnI CCWGG 2 cut(s) 140, 590
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 5 cut(s) 270, 285, 297, 567, 588
AluI AGCT 5 cut(s) 270, 285, 297, 567, 588
AlwI GGATC 2 cut(s) 426, 514
AoxI GGCC 1 cut(s) 593
ApeKI GCWGC 2 cut(s) 59, 499
Asp718I GGTACC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 4 cut(s) 154, 214, 355, 570
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 145
BauI CACGAG 1 cut(s) 280
BbvI GCAGC 2 cut(s) 71, 486
BccI CCATC 2 cut(s) 71, 83
BcgI CGANNNNNNTGC 4 cut(s) 187, 221, 255, 289
BciT130I CCWGG 2 cut(s) 142, 592
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 597
BfaI CTAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 2 cut(s) 60, 500
BlsI GCNGC 2 cut(s) 61, 501
Bme1390I CCNGG 3 cut(s) 142, 592, 597
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 3 cut(s) 142, 592, 597
BmsI GCATC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 1 cut(s) 574
Bpu14I TTCGAA 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 597
BsaJI CCNNGG 6 cut(s) 19, 26, 140, 141, 255, 301
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 142, 340
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 142, 592
BseDI CCNNGG 6 cut(s) 19, 26, 140, 141, 255, 301
BseGI GGATG 2 cut(s) 132, 312
BseLI CCNNNNNNNGG 3 cut(s) 32, 142, 340
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 3 cut(s) 231, 307, 399
BseXI GCAGC 2 cut(s) 71, 486
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 595
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 596
BslI CCNNNNNNNGG 3 cut(s) 32, 142, 340
BsnI GGCC 1 cut(s) 595
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 3 cut(s) 93, 418, 506
Bsp19I CCATGG 1 cut(s) 19
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 3 cut(s) 232, 306, 400
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 426, 514
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 84
BssECI CCNNGG 6 cut(s) 19, 26, 140, 141, 255, 301
BssMI GATC 3 cut(s) 93, 418, 506
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 3 cut(s) 19, 255, 301
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 142, 592
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 57, 206, 264, 268
BstDEI CTNAG 3 cut(s) 240, 293, 408
BstDSI CCRYGG 2 cut(s) 19, 26
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 2 cut(s) 132, 312
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 3 cut(s) 96, 421, 509
BstMBI GATC 3 cut(s) 93, 418, 506
BstNI CCWGG 2 cut(s) 142, 592
BstNSI RCATGY 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 140, 590, 595
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 71, 486
BsuRI GGCC 1 cut(s) 595
BtgI CCRYGG 2 cut(s) 19, 26
BtsCI GGATG 2 cut(s) 132, 312
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 4 cut(s) 57, 206, 264, 268
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 146, 331
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 4 cut(s) 20, 127, 263, 551
CviQI GTAC 2 cut(s) 146, 331
DdeI CTNAG 3 cut(s) 240, 293, 408
DpnI GATC 3 cut(s) 95, 420, 508
DpnII GATC 3 cut(s) 93, 418, 506
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 3 cut(s) 19, 255, 301
Eco47I GGWCC 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 140, 590
EcoT14I CCWWGG 3 cut(s) 19, 255, 301
EcoT22I ATGCAT 1 cut(s) 556
ErhI CCWWGG 3 cut(s) 19, 255, 301
FaeI CATG 4 cut(s) 23, 130, 266, 554
FatI CATG 4 cut(s) 19, 126, 262, 550
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 60, 500
FokI GGATG 2 cut(s) 119, 319
Fsp4HI GCNGC 2 cut(s) 60, 500
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 60, 500
GsuI CTGGAG 1 cut(s) 574
HaeIII GGCC 1 cut(s) 595
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 262
Hin1II CATG 4 cut(s) 23, 130, 266, 554
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 539
HindII GTYRAC 1 cut(s) 539
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 2 cut(s) 383, 450
HpaII CCGG 1 cut(s) 596
HphI GGTGA 4 cut(s) 154, 214, 355, 570
Hpy166II GTNNAC 3 cut(s) 26, 427, 539
Hpy188I TCNGA 3 cut(s) 277, 409, 506
Hpy8I GTNNAC 3 cut(s) 26, 427, 539
Hpy99I CGWCG 2 cut(s) 197, 202
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4V TGCA 5 cut(s) 59, 72, 218, 266, 554
HpyF3I CTNAG 3 cut(s) 240, 293, 408
Hsp92II CATG 4 cut(s) 23, 130, 266, 554
HspAI GCGC 1 cut(s) 260
KpnI GGTACC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 93, 418, 506
LmnI GCTCC 2 cut(s) 564, 593
LpnPI CCDG 6 cut(s) 127, 154, 218, 398, 505, 577
Lsp1109I GCAGC 2 cut(s) 71, 486
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 95, 420, 508
MboI GATC 3 cut(s) 93, 418, 506
MboII GAAGA 2 cut(s) 361, 451
MluCI AATT 2 cut(s) 430, 510
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 5 cut(s) 26, 228, 334, 339, 397
Mph1103I ATGCAT 1 cut(s) 556
MseI TTAA 2 cut(s) 369, 543
MslI CAYNNNNRTG 2 cut(s) 89, 230
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 3 cut(s) 142, 592, 597
MvaI CCWGG 2 cut(s) 142, 592
MvnI CGCG 1 cut(s) 197
NciI CCSGG 1 cut(s) 597
NcoI CCATGG 1 cut(s) 19
NdeII GATC 3 cut(s) 93, 418, 506
NlaIII CATG 4 cut(s) 23, 130, 266, 554
NlaIV GGNNCC 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 1 cut(s) 266
NspV TTCGAA 1 cut(s) 186
PaeI GCATGC 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 403
PasI CCCWGGG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 2 cut(s) 61, 501
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 140, 590
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 2 cut(s) 140, 590
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 2 cut(s) 147, 332
RsaNI GTAC 2 cut(s) 146, 331
RseI CAYNNNNRTG 2 cut(s) 89, 230
SalI GTCGAC 1 cut(s) 537
SaqAI TTAA 2 cut(s) 369, 543
SatI GCNGC 2 cut(s) 60, 500
Sau3AI GATC 3 cut(s) 93, 418, 506
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 3 cut(s) 142, 592, 597
SfaNI GCATC 1 cut(s) 114
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 89, 230
SphI GCATGC 1 cut(s) 266
Sse9I AATT 2 cut(s) 430, 510
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 3 cut(s) 140, 590, 595
StyI CCWWGG 3 cut(s) 19, 255, 301
TaaI ACNGT 1 cut(s) 536
TaqI TCGA 3 cut(s) 186, 459, 538
TasI AATT 2 cut(s) 430, 510
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 2 cut(s) 369, 543
Tru9I TTAA 2 cut(s) 369, 543
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 2 cut(s) 59, 499
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 323, 539
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 538
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.