Rorug07G0149900

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014216
Physical Location & Seq
Forward (+)
11908639 .. 11908971
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0149900.1

Sequence Viewer

Length: 333 bp
ATGCTTCATTTCTGTTTAGGGTTTTGTGATAAATGTGTTTTGGGCAACATTGAAATCGGCACTACCCGGAGCGGAGCTGTGATTGCAGGCAAACCCGAATGGAATGTGGTTGTGAAAAACAACTGCCAATGTGCTCAATCACTGATAACGGTGAGCTGCCAAGGGTTTCAGTCGTCATATCCGGTTGATCCAAAGAAACTAGTGAAGCATGTTGACAAGTGCATCATCAACAGGGGAGAGGCCTTGCCCGGCAGTGTTTCTGTGACATTCTCTTATGCTCGGGATCCTCCTTTCATTTTGGTGCATGTGTCCTCTGTTGTGATCCCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

110

Amino Acids

11.88

Weight (kDa)

8.46

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPD1_C PF24068 16 - 104 1.5e-23 Tapetum determinant 1, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 72
AciI CCGC 1 cut(s) 72
AclWI GGATC 4 cut(s) 182, 278, 291, 316
AgsI TTSAA 1 cut(s) 53
AhlI ACTAGT 1 cut(s) 199
AluBI AGCT 2 cut(s) 77, 156
AluI AGCT 2 cut(s) 77, 156
Alw21I GWGCWC 1 cut(s) 136
AlwI GGATC 4 cut(s) 182, 278, 291, 316
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 156
AsuC2I CCSGG 2 cut(s) 67, 249
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 279
BamHI GGATCC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 143
BcnI CCSGG 2 cut(s) 67, 249
BcuI ACTAGT 1 cut(s) 199
BfaI CTAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 67, 249
BmeT110I CYCGRG 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 67, 249
BmsI GCATC 1 cut(s) 231
BpuMI CCSGG 2 cut(s) 67, 249
BsaJI CCNNGG 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 3 cut(s) 67, 182, 249
BsnI GGCC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 3 cut(s) 187, 283, 321
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 242
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 4 cut(s) 182, 278, 291, 316
BsrBI CCGCTC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 3 cut(s) 187, 283, 321
BssT1I CCWWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 88
BstKTI GATC 3 cut(s) 190, 286, 324
BstMBI GATC 3 cut(s) 187, 283, 321
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNSI RCATGY 2 cut(s) 212, 308
BstSCI CCNGG 2 cut(s) 65, 247
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 140, 259
Cac8I GCNNGC 1 cut(s) 88
CviAII CATG 2 cut(s) 209, 305
CviJI RGCY 3 cut(s) 77, 156, 242
CviKI_1 RGCY 3 cut(s) 77, 156, 242
DpnI GATC 3 cut(s) 189, 285, 323
DpnII GATC 3 cut(s) 187, 283, 321
Eco130I CCWWGG 1 cut(s) 160
Eco147I AGGCCT 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 212, 308
FaiI YATR 4 cut(s) 178, 210, 276, 306
FatI CATG 2 cut(s) 208, 304
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 242
HapII CCGG 3 cut(s) 67, 182, 249
Hin1II CATG 2 cut(s) 212, 308
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HpaII CCGG 3 cut(s) 67, 182, 249
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 86, 222, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 212, 308
Kzo9I GATC 3 cut(s) 187, 283, 321
LmnI GCTCC 2 cut(s) 69, 74
LpnPI CCDG 5 cut(s) 72, 80, 195, 217, 262
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 189, 285, 323
MbiI CCGCTC 1 cut(s) 72
MboI GATC 3 cut(s) 187, 283, 321
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 136
MnlI CCTC 3 cut(s) 232, 297, 322
MseI TTAA 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 3 cut(s) 67, 182, 249
MspR9I CCNGG 2 cut(s) 67, 249
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 2 cut(s) 67, 249
NdeII GATC 3 cut(s) 187, 283, 321
NlaIII CATG 2 cut(s) 212, 308
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 2 cut(s) 212, 308
PceI AGGCCT 1 cut(s) 242
PkrI GCNGC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 285
PsuI RGATCY 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 3 cut(s) 187, 283, 321
ScrFI CCNGG 2 cut(s) 67, 249
SduI GDGCHC 1 cut(s) 136
SetI ASST 2 cut(s) 79, 158
SfaNI GCATC 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 199
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 200
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 65, 247
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 151
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 2 cut(s) 147, 259
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 283
TspRI CASTG 2 cut(s) 147, 259
XceI RCATGY 2 cut(s) 212, 308
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.