pycom16g25730

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014216
Physical Location & Seq
Forward (+)
27860179 .. 27860775
597 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g25730.1

Sequence Viewer

Length: 597 bp
ATGACAAGAAAATTAACCCAAGGATCAGCCACGCACCCTTTGGTTTGGTTTGCAGCCATAATCTGCACCGTTGTAGCCATAGCTGTGATCATTGTGGGCATCGTGGTGTTCTCCGGCTACATGATCATCCATCCGAGGGTGCCTTTCATCACCGTTACCTCTGCTCATCTCGACAACTTTCAAAACACCGAGGCCGGTCTTCTTGAAACGGAGATCACCATTGTTGTAAGGGCAGAGAACGACAACACCAAAGCGCATGCAAGCTTTTCGGATACAAGCTTCATGCTGAGCATCCAAGGGCTGAACATTGCGAGGCTGGTGGCGTATCCGTTCGAAGTCAATAAAAATAGCTCGGTTGATTTCCCTTACTTGGTGCAATCATCGTCAATTCCGCTGAGTCCGGAGCTGATGGATCAAGTGGACATTTCGTTGAAGCGGGACAGAATTGTTTTTAACTTGAAGGGGAATTTGAGGGGAAGGTGGAGAGTAGGGTTGCTTGGTTCAGTTAAGTTCTGGGGTCATTTGAATTGTCAGCTCAAGTTTCATCCTTCAAATGGAACTTACATACGCTCACCTTGCAGCTCAAGGGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

199

Amino Acids

21.99

Weight (kDa)

9.47

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 2 cut(s) 392, 436
AclWI GGATC 2 cut(s) 31, 420
AcsI RAATTY 1 cut(s) 466
AfiI CCNNNNNNNGG 3 cut(s) 136, 370, 554
AgsI TTSAA 6 cut(s) 182, 206, 433, 460, 526, 552
AluBI AGCT 7 cut(s) 83, 264, 279, 351, 406, 535, 582
AluI AGCT 7 cut(s) 83, 264, 279, 351, 406, 535, 582
AlwI GGATC 2 cut(s) 31, 420
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 2 cut(s) 53, 579
ApoI RAATTY 1 cut(s) 466
AspLEI GCGC 1 cut(s) 256
AsuHPI GGTGA 3 cut(s) 142, 208, 564
AsuII TTCGAA 1 cut(s) 333
BanI GGYRCC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 65, 591
BccI CCATC 2 cut(s) 138, 403
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BciVI GTATCC 2 cut(s) 265, 336
BclI TGATCA 2 cut(s) 87, 123
BfuI GTATCC 2 cut(s) 265, 336
BisI GCNGC 2 cut(s) 54, 580
BlpI GCTNAGC 1 cut(s) 287
BlsI GCNGC 2 cut(s) 55, 581
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 2 cut(s) 108, 300
BpiI GAAGAC 1 cut(s) 191
Bpu1102I GCTNAGC 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 333
BpuEI CTTGAG 2 cut(s) 521, 568
BsaJI CCNNGG 4 cut(s) 19, 134, 189, 295
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 370, 554
Bse118I RCCGGY 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 306
BseAI TCCGGA 1 cut(s) 400
BseDI CCNNGG 4 cut(s) 19, 134, 189, 295
BseGI GGATG 4 cut(s) 126, 130, 291, 544
BseLI CCNNNNNNNGG 3 cut(s) 136, 370, 554
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 278, 386
BseXI GCAGC 2 cut(s) 65, 591
BsgI GTGCAG 1 cut(s) 49
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 139
BsiSI CCGG 3 cut(s) 114, 195, 401
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 3 cut(s) 136, 370, 554
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 333
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 5 cut(s) 23, 87, 123, 213, 412
Bsp1720I GCTNAGC 1 cut(s) 287
BspACI CCGC 2 cut(s) 392, 436
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 279, 387
BspEI TCCGGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 2 cut(s) 31, 420
BspT104I TTCGAA 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 19, 134, 189, 295
BssMI GATC 5 cut(s) 23, 87, 123, 213, 412
BssT1I CCWWGG 2 cut(s) 19, 295
Bst4CI ACNGT 2 cut(s) 70, 154
BstBI TTCGAA 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 258, 262
BstDEI CTNAG 2 cut(s) 287, 395
BstF5I GGATG 4 cut(s) 126, 130, 291, 544
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 5 cut(s) 26, 90, 126, 216, 415
BstMBI GATC 5 cut(s) 23, 87, 123, 213, 412
BstMWI GCNNNNNNNGC 1 cut(s) 576
BstNSI RCATGY 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 65, 591
BstV2I GAAGAC 1 cut(s) 191
BsuI GTATCC 2 cut(s) 265, 336
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 4 cut(s) 126, 130, 291, 544
Cac8I GCNNGC 2 cut(s) 258, 262
CfoI GCGC 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 194
CviAII CATG 3 cut(s) 121, 257, 283
DdeI CTNAG 2 cut(s) 287, 395
DpnI GATC 5 cut(s) 25, 89, 125, 215, 414
DpnII GATC 5 cut(s) 23, 87, 123, 213, 412
Eco130I CCWWGG 2 cut(s) 19, 295
EcoT14I CCWWGG 2 cut(s) 19, 295
ErhI CCWWGG 2 cut(s) 19, 295
FaeI CATG 3 cut(s) 124, 260, 286
FaiI YATR 6 cut(s) 59, 80, 122, 258, 284, 566
FaqI GGGAC 1 cut(s) 452
FatI CATG 3 cut(s) 120, 256, 282
FauI CCCGC 1 cut(s) 429
FbaI TGATCA 2 cut(s) 87, 123
Fnu4HI GCNGC 2 cut(s) 54, 580
FokI GGATG 4 cut(s) 113, 117, 278, 531
Fsp4HI GCNGC 2 cut(s) 54, 580
GlaI GCGC 1 cut(s) 255
GluI GCNGC 2 cut(s) 54, 580
HaeIII GGCC 1 cut(s) 194
HapII CCGG 3 cut(s) 114, 195, 401
HhaI GCGC 1 cut(s) 256
Hin1II CATG 3 cut(s) 124, 260, 286
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 2 cut(s) 262, 277
HinfI GANTC 1 cut(s) 397
HpaII CCGG 3 cut(s) 114, 195, 401
HphI GGTGA 3 cut(s) 142, 208, 564
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 2 cut(s) 135, 271
Hpy188III TCNNGA 3 cut(s) 170, 203, 401
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 3 cut(s) 454, 471, 558
HpyCH4III ACNGT 2 cut(s) 70, 154
HpyCH4V TGCA 5 cut(s) 53, 66, 260, 376, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 576
HpyF3I CTNAG 2 cut(s) 287, 395
Hsp92II CATG 3 cut(s) 124, 260, 286
HspAI GCGC 1 cut(s) 254
Kpn2I TCCGGA 1 cut(s) 400
Ksp22I TGATCA 2 cut(s) 87, 123
Kzo9I GATC 5 cut(s) 23, 87, 123, 213, 412
LmnI GCTCC 1 cut(s) 403
LpnPI CCDG 5 cut(s) 127, 208, 302, 414, 499
Lsp1109I GCAGC 2 cut(s) 65, 591
LweI GCATC 2 cut(s) 108, 300
MaeIII GTNAC 1 cut(s) 154
MalI GATC 5 cut(s) 25, 89, 125, 215, 414
MboI GATC 5 cut(s) 23, 87, 123, 213, 412
MboII GAAGA 1 cut(s) 191
MluCI AATT 5 cut(s) 11, 387, 444, 466, 526
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 5 cut(s) 129, 169, 184, 306, 465
MroI TCCGGA 1 cut(s) 400
MseI TTAA 3 cut(s) 14, 453, 507
MslI CAYNNNNRTG 2 cut(s) 83, 104
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 3 cut(s) 114, 195, 401
MwoI GCNNNNNNNGC 1 cut(s) 576
NdeII GATC 5 cut(s) 23, 87, 123, 213, 412
NlaIII CATG 3 cut(s) 124, 260, 286
NlaIV GGNNCC 1 cut(s) 141
NspI RCATGY 1 cut(s) 260
NspV TTCGAA 1 cut(s) 333
PaeI GCATGC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 55, 581
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 141
RseI CAYNNNNRTG 2 cut(s) 83, 104
SaqAI TTAA 3 cut(s) 14, 453, 507
SatI GCNGC 2 cut(s) 54, 580
Sau3AI GATC 5 cut(s) 23, 87, 123, 213, 412
SchI GAGTC 1 cut(s) 406
SfaNI GCATC 2 cut(s) 108, 300
SfuI TTCGAA 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 83, 104
SmlI CTYRAG 2 cut(s) 536, 583
SmoI CTYRAG 2 cut(s) 536, 583
SphI GCATGC 1 cut(s) 260
Sse9I AATT 5 cut(s) 11, 387, 444, 466, 526
SsiI CCGC 2 cut(s) 392, 436
StyI CCWWGG 2 cut(s) 19, 295
TaaI ACNGT 2 cut(s) 70, 154
TaqI TCGA 2 cut(s) 171, 333
TasI AATT 5 cut(s) 11, 387, 444, 466, 526
Tru1I TTAA 3 cut(s) 14, 453, 507
Tru9I TTAA 3 cut(s) 14, 453, 507
TseI GCWGC 2 cut(s) 53, 579
TspDTI ATGAA 3 cut(s) 136, 271, 533
TspGWI ACGGA 2 cut(s) 224, 318
XapI RAATTY 1 cut(s) 466
XceI RCATGY 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.