Rmu_sc0005476.1_g000013

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005476.1
OG0014216
Physical Location & Seq
Reverse (-)
84065 .. 88393
4329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005476.1_g000013.1.cds

Sequence Viewer

Length: 819 bp
atgccgagaaaactaatccatggtccacggagaggcacacaccctttggtttggcttgcagccatcatctgcaccatcatctccattgctgtgatcattgtgggcatcgtggttttcgtgggctacatggtcatgcaccccagggtaccctttatcaaggtcaccacagcacaccttgacaagttcgaaagcgacgcgacgagcctgctagacactgcaatcaccattgttgtgagggctgagaacgacaacaccaaggtgcatgcaagcttctcggacacgagcttcactctcagcttccaagggatgaacatagcaaagttggtggcgtacccttttgaggtgaggaagaatagttctgtggattttaactatgtggtggagtcctcgtccataccattgagttctgagcaggtggatcaagtggacaattctttgaagagagatagaatcagtttcgatttgaaggggaatgttagagcaagcatcttcggacacgatgttgaagaggacgctatcttcttggcagttgattacgaggttttactggaattttcaggtttatattctcaaagtagccttggaagtaggcgtttggtggttagagtttgggccctttggcctgatggtctctgtaaccgcggtgtagaagaaacttgcaggatggaagtagggatggcaaaaatccccagcggggcggagctccattggatacctgcccctaatggggggagaattcggggacaaatggagaatggggatgaggatccccaatccccgctatctaagattggggatggggcggggatggtattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

272

Amino Acids

29.96

Weight (kDa)

5.66

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 2 cut(s) 403, 724
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 145
AccII CGCG 2 cut(s) 197, 642
AciI CCGC 6 cut(s) 640, 642, 693, 698, 779, 803
AclWI GGATC 3 cut(s) 426, 761, 774
AcsI RAATTY 2 cut(s) 551, 735
AfaI GTAC 2 cut(s) 147, 332
AfiI CCNNNNNNNGG 6 cut(s) 32, 340, 694, 726, 727, 728
AgsI TTSAA 3 cut(s) 439, 466, 506
AjnI CCWGG 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 257
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 4 cut(s) 270, 285, 297, 703
AluI AGCT 4 cut(s) 270, 285, 297, 703
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 3 cut(s) 426, 761, 774
AoxI GGCC 2 cut(s) 612, 620
ApaI GGGCCC 1 cut(s) 616
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 551, 735
Asp718I GGTACC 1 cut(s) 145
AspS9I GGNCC 3 cut(s) 23, 612, 613
AsuHPI GGTGA 3 cut(s) 154, 214, 355
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 616
BamHI GGATCC 1 cut(s) 766
BanI GGYRCC 1 cut(s) 145
BanII GRGCYC 2 cut(s) 616, 705
BauI CACGAG 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 705
BbvI GCAGC 1 cut(s) 71
BccI CCATC 7 cut(s) 71, 83, 620, 658, 670, 791, 802
BcgI CGANNNNNNTGC 4 cut(s) 187, 221, 255, 289
BciT130I CCWGG 1 cut(s) 142
BciVI GTATCC 1 cut(s) 705
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 635
BfaI CTAG 1 cut(s) 209
BfuAI ACCTGC 2 cut(s) 403, 724
BfuI GTATCC 1 cut(s) 705
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 3 cut(s) 23, 612, 613
BmiI GGNNCC 3 cut(s) 147, 614, 768
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 2 cut(s) 114, 495
BplI GAGNNNNNCTC 2 cut(s) 274, 306
Bpu14I TTCGAA 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 765
BsaI GGTCTC 1 cut(s) 635
BsaJI CCNNGG 8 cut(s) 19, 26, 140, 141, 255, 301, 580, 640
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 6 cut(s) 32, 340, 694, 726, 727, 728
Bse1I ACTGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 765
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 8 cut(s) 19, 26, 140, 141, 255, 301, 580, 640
BseGI GGATG 6 cut(s) 312, 669, 681, 766, 802, 813
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 6 cut(s) 32, 340, 694, 726, 727, 728
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 3 cut(s) 231, 307, 399
BseNI ACTGG 1 cut(s) 552
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 689
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 2 cut(s) 197, 642
BshFI GGCC 2 cut(s) 614, 622
BshNI GGYRCC 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 705
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 6 cut(s) 32, 340, 694, 726, 727, 728
BsmAI GTCTC 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 756
BsnI GGCC 2 cut(s) 614, 622
Bso31I GGTCTC 1 cut(s) 635
Bsp119I TTCGAA 1 cut(s) 186
Bsp120I GGGCCC 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 616, 705
Bsp143I GATC 3 cut(s) 93, 418, 766
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 6 cut(s) 640, 642, 693, 698, 779, 803
BspANI GGCC 2 cut(s) 614, 622
BspCNI CTCAG 3 cut(s) 232, 306, 400
BspFNI CGCG 2 cut(s) 197, 642
BspLI GGNNCC 3 cut(s) 147, 614, 768
BspMI ACCTGC 2 cut(s) 403, 724
BspPI GGATC 3 cut(s) 426, 761, 774
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 8 cut(s) 19, 26, 140, 141, 255, 301, 580, 640
BssMI GATC 3 cut(s) 93, 418, 766
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 4 cut(s) 19, 255, 301, 580
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 434, 501
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 5 cut(s) 57, 206, 264, 268, 484
BstDEI CTNAG 4 cut(s) 240, 293, 408, 786
BstDSI CCRYGG 3 cut(s) 19, 26, 640
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 6 cut(s) 312, 669, 681, 766, 802, 813
BstFNI CGCG 2 cut(s) 197, 642
BstKTI GATC 3 cut(s) 96, 421, 769
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 3 cut(s) 93, 418, 766
BstNI CCWGG 1 cut(s) 142
BstNSI RCATGY 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 616
BstUI CGCG 2 cut(s) 197, 642
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
BsuI GTATCC 1 cut(s) 705
BsuRI GGCC 2 cut(s) 614, 622
BtgI CCRYGG 3 cut(s) 19, 26, 640
BtsCI GGATG 6 cut(s) 312, 669, 681, 766, 802, 813
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 2 cut(s) 403, 724
Cac8I GCNNGC 5 cut(s) 57, 206, 264, 268, 484
Cfr13I GGNCC 3 cut(s) 23, 612, 613
Cfr42I CCGCGG 1 cut(s) 643
CseI GACGC 2 cut(s) 203, 521
Csp6I GTAC 2 cut(s) 146, 331
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 4 cut(s) 20, 127, 133, 263
CviQI GTAC 2 cut(s) 146, 331
DdeI CTNAG 4 cut(s) 240, 293, 408, 786
DpnI GATC 3 cut(s) 95, 420, 768
DpnII GATC 3 cut(s) 93, 418, 766
Eam1104I CTCTTC 2 cut(s) 434, 501
EarI CTCTTC 2 cut(s) 434, 501
EciI GGCGGA 1 cut(s) 713
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 4 cut(s) 19, 255, 301, 580
Eco24I GRGCYC 2 cut(s) 616, 705
Eco31I GGTCTC 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 703
Eco91I GGTNACC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 703
EcoO109I RGGNCCY 1 cut(s) 613
EcoO65I GGTNACC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 735
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 4 cut(s) 19, 255, 301, 580
EcoT38I GRGCYC 2 cut(s) 616, 705
ErhI CCWWGG 4 cut(s) 19, 255, 301, 580
FaeI CATG 4 cut(s) 23, 130, 136, 266
FaiI YATR 8 cut(s) 21, 128, 134, 264, 314, 375, 395, 565
FaqI GGGAC 1 cut(s) 756
FatI CATG 4 cut(s) 19, 126, 132, 262
FauI CCCGC 3 cut(s) 686, 786, 796
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 5 cut(s) 319, 676, 688, 773, 809
FriOI GRGCYC 2 cut(s) 616, 705
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 693
HaeIII GGCC 2 cut(s) 614, 622
HgaI GACGC 2 cut(s) 203, 521
Hin1II CATG 4 cut(s) 23, 130, 136, 266
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 2 cut(s) 383, 450
HphI GGTGA 3 cut(s) 154, 214, 355
Hpy166II GTNNAC 2 cut(s) 26, 427
Hpy188I TCNGA 3 cut(s) 277, 409, 494
Hpy8I GTNNAC 2 cut(s) 26, 427
Hpy99I CGWCG 2 cut(s) 197, 202
HpyAV CCTTC 1 cut(s) 460
HpyCH4V TGCA 7 cut(s) 59, 72, 136, 218, 262, 266, 660
HpyF3I CTNAG 4 cut(s) 240, 293, 408, 786
Hsp92II CATG 4 cut(s) 23, 130, 136, 266
KpnI GGTACC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 93
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 3 cut(s) 93, 418, 766
LmnI GCTCC 2 cut(s) 700, 708
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 2 cut(s) 114, 495
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 160, 635
MalI GATC 3 cut(s) 95, 420, 768
MboI GATC 3 cut(s) 93, 418, 766
MboII GAAGA 6 cut(s) 361, 451, 481, 511, 518, 662
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 2 cut(s) 616, 705
MluCI AATT 3 cut(s) 430, 551, 735
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 8 cut(s) 26, 228, 334, 339, 397, 502, 532, 757
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 4 cut(s) 89, 131, 230, 257
MspA1I CMGCKG 2 cut(s) 642, 693
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 2 cut(s) 197, 642
NcoI CCATGG 1 cut(s) 19
NdeII GATC 3 cut(s) 93, 418, 766
NlaIII CATG 4 cut(s) 23, 130, 136, 266
NlaIV GGNNCC 3 cut(s) 147, 614, 768
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 266
NspV TTCGAA 1 cut(s) 186
OliI CACNNNNGTG 1 cut(s) 257
PaeI GCATGC 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 403
PasI CCCWGGG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp124BI GAGCTC 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 140
PspEI GGTNACC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 147, 614, 768
PspOMI GGGCCC 1 cut(s) 612
PspPI GGNCC 3 cut(s) 23, 612, 613
PsuI RGATCY 1 cut(s) 766
RsaI GTAC 2 cut(s) 147, 332
RsaNI GTAC 2 cut(s) 146, 331
RseI CAYNNNNRTG 4 cut(s) 89, 131, 230, 257
SacI GAGCTC 1 cut(s) 705
SacII CCGCGG 1 cut(s) 643
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 3 cut(s) 93, 418, 766
Sau96I GGNCC 3 cut(s) 23, 612, 613
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 2 cut(s) 616, 705
SfaNI GCATC 2 cut(s) 114, 495
Sfr303I CCGCGG 1 cut(s) 643
SfuI TTCGAA 1 cut(s) 186
SgrBI CCGCGG 1 cut(s) 643
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 4 cut(s) 89, 131, 230, 257
SphI GCATGC 1 cut(s) 266
Sse9I AATT 3 cut(s) 430, 551, 735
SsiI CCGC 6 cut(s) 640, 642, 693, 698, 779, 803
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 705
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 4 cut(s) 19, 255, 301, 580
TaqI TCGA 2 cut(s) 186, 459
TasI AATT 3 cut(s) 430, 551, 735
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 323
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 2 cut(s) 551, 735
XceI RCATGY 1 cut(s) 266
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.