Rh7BG278400

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014216
Physical Location & Seq
Forward (+)
25871283 .. 25872496
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG278400.1

Sequence Viewer

Length: 612 bp
ATGCCGAGAAAACTAATCCATGGTCCACAGAGAGGCACACACCCTTTGGTTTGGTTTGCAGCCATCATCTGCACCATCATCTCCATTGCTGTGATCATTGCGGGCATCGTGGTTTTCGTGGGCTACATGATCATCCACCCCAGGGTACCCTTCATCAAGGTCACCACAGCACACCTTGACAAGTTCGAAAGCGATGCGACGAGCCTGCTAGACACTGCAATCACCATTGTTGTGAGGGCTGAGAACGACAACACCAAGGCGCATGCAAGCTTCTCGGACACGAGCTTCACTCTCAGCTTCCAAGGGATGAACATAGCAAAGTTGGTGGCGTACCCTTTTGAGGTGAGGAAGAATAGTTCTGTGGATTTTAACTATGTGGTGGAGTCCTCGTCCATACCATTGAGTTCTGAGCAGGTGGATCAAGTGGACAATTCTTTGAAGAGAGATAGAATCAGTTTCGATTTGAAGGGGAAAGTTAGAGCAAGGTGGAGAGTACTCAGAGTAGGGCTGCTTCGATCATTTGGGTTCTGGGGTCATTTGAACTGTCGACTTAACTTTCATGCATTGAATGGGAGCTACATATACTCACCTTGTAGCTCCAGGGCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

203

Amino Acids

22.76

Weight (kDa)

9.75

Isoelectric Point (pI)

25.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 403
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 547
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 426
AfaI GTAC 3 cut(s) 147, 332, 495
AfiI CCNNNNNNNGG 3 cut(s) 32, 142, 340
AgsI TTSAA 4 cut(s) 439, 466, 541, 568
AjnI CCWGG 2 cut(s) 140, 599
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 5 cut(s) 270, 285, 297, 576, 597
AluI AGCT 5 cut(s) 270, 285, 297, 576, 597
AlwI GGATC 1 cut(s) 426
ApeKI GCWGC 2 cut(s) 59, 508
Asp718I GGTACC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 4 cut(s) 154, 214, 355, 579
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 145
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BauI CACGAG 1 cut(s) 280
BbvI GCAGC 2 cut(s) 71, 495
BccI CCATC 2 cut(s) 71, 83
BcgI CGANNNNNNTGC 6 cut(s) 176, 187, 210, 221, 255, 289
BciT130I CCWGG 2 cut(s) 142, 601
BclI TGATCA 2 cut(s) 93, 129
BfaI CTAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 2 cut(s) 60, 509
BlsI GCNGC 2 cut(s) 61, 510
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 2 cut(s) 142, 601
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 142, 601
BmsI GCATC 2 cut(s) 114, 184
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 1 cut(s) 583
Bpu14I TTCGAA 1 cut(s) 186
BsaJI CCNNGG 6 cut(s) 19, 140, 141, 255, 301, 600
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 142, 340
Bse3DI GCAATG 2 cut(s) 84, 96
BseBI CCWGG 2 cut(s) 142, 601
BseDI CCNNGG 6 cut(s) 19, 140, 141, 255, 301, 600
BseGI GGATG 2 cut(s) 132, 312
BseLI CCNNNNNNNGG 3 cut(s) 32, 142, 340
BseMI GCAATG 2 cut(s) 84, 96
BseMII CTCAG 4 cut(s) 231, 307, 399, 511
BseXI GCAGC 2 cut(s) 71, 495
BsgI GTGCAG 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 145
BslI CCNNNNNNNGG 3 cut(s) 32, 142, 340
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 4 cut(s) 93, 129, 418, 515
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 1 cut(s) 101
BspCNI CTCAG 4 cut(s) 232, 306, 400, 510
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 1 cut(s) 426
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 145
BsrDI GCAATG 2 cut(s) 84, 96
BssECI CCNNGG 6 cut(s) 19, 140, 141, 255, 301, 600
BssMI GATC 4 cut(s) 93, 129, 418, 515
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 3 cut(s) 19, 255, 301
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 142, 601
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 103, 206, 264, 268
BstDEI CTNAG 5 cut(s) 240, 293, 408, 497, 606
BstDSI CCRYGG 1 cut(s) 19
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 2 cut(s) 132, 312
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 4 cut(s) 96, 132, 421, 518
BstMBI GATC 4 cut(s) 93, 129, 418, 515
BstNI CCWGG 2 cut(s) 142, 601
BstNSI RCATGY 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 140, 599
BstV1I GCAGC 2 cut(s) 71, 495
BtgI CCRYGG 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 2 cut(s) 132, 312
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 4 cut(s) 103, 206, 264, 268
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 3 cut(s) 146, 331, 494
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 4 cut(s) 20, 127, 263, 560
CviQI GTAC 3 cut(s) 146, 331, 494
DdeI CTNAG 5 cut(s) 240, 293, 408, 497, 606
DpnI GATC 4 cut(s) 95, 131, 420, 517
DpnII GATC 4 cut(s) 93, 129, 418, 515
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 3 cut(s) 19, 255, 301
Eco47I GGWCC 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 140, 599
EcoT14I CCWWGG 3 cut(s) 19, 255, 301
EcoT22I ATGCAT 1 cut(s) 565
ErhI CCWWGG 3 cut(s) 19, 255, 301
FaeI CATG 4 cut(s) 23, 130, 266, 563
FaiI YATR 9 cut(s) 21, 128, 264, 314, 375, 395, 561, 581, 583
FatI CATG 4 cut(s) 19, 126, 262, 559
FauI CCCGC 1 cut(s) 94
FbaI TGATCA 2 cut(s) 93, 129
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 60, 509
FokI GGATG 2 cut(s) 119, 319
Fsp4HI GCNGC 2 cut(s) 60, 509
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 60, 509
GsuI CTGGAG 1 cut(s) 583
HhaI GCGC 1 cut(s) 262
Hin1II CATG 4 cut(s) 23, 130, 266, 563
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 1 cut(s) 548
HindII GTYRAC 1 cut(s) 548
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 2 cut(s) 383, 450
HphI GGTGA 4 cut(s) 154, 214, 355, 579
Hpy166II GTNNAC 3 cut(s) 26, 427, 548
Hpy188I TCNGA 3 cut(s) 277, 409, 500
Hpy8I GTNNAC 3 cut(s) 26, 427, 548
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 160, 460
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4V TGCA 5 cut(s) 59, 72, 218, 266, 563
HpyF3I CTNAG 5 cut(s) 240, 293, 408, 497, 606
Hsp92II CATG 4 cut(s) 23, 130, 266, 563
HspAI GCGC 1 cut(s) 260
KpnI GGTACC 1 cut(s) 149
Ksp22I TGATCA 2 cut(s) 93, 129
Kzo9I GATC 4 cut(s) 93, 129, 418, 515
LmnI GCTCC 2 cut(s) 573, 602
LpnPI CCDG 6 cut(s) 127, 154, 218, 398, 514, 586
Lsp1109I GCAGC 2 cut(s) 71, 495
LweI GCATC 2 cut(s) 114, 184
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 160
MalI GATC 4 cut(s) 95, 131, 420, 517
MboI GATC 4 cut(s) 93, 129, 418, 515
MboII GAAGA 2 cut(s) 361, 451
MluCI AATT 1 cut(s) 430
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 5 cut(s) 26, 228, 334, 339, 397
Mph1103I ATGCAT 1 cut(s) 565
MseI TTAA 2 cut(s) 369, 552
MslI CAYNNNNRTG 2 cut(s) 89, 230
MspR9I CCNGG 2 cut(s) 142, 601
MvaI CCWGG 2 cut(s) 142, 601
NcoI CCATGG 1 cut(s) 19
NdeII GATC 4 cut(s) 93, 129, 418, 515
NlaIII CATG 4 cut(s) 23, 130, 266, 563
NlaIV GGNNCC 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 1 cut(s) 266
NspV TTCGAA 1 cut(s) 186
PaeI GCATGC 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 403
PasI CCCWGGG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 2 cut(s) 61, 510
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 140, 599
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 2 cut(s) 140, 599
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 3 cut(s) 147, 332, 495
RsaNI GTAC 3 cut(s) 146, 331, 494
RseI CAYNNNNRTG 2 cut(s) 89, 230
SalI GTCGAC 1 cut(s) 546
SaqAI TTAA 2 cut(s) 369, 552
SatI GCNGC 2 cut(s) 60, 509
Sau3AI GATC 4 cut(s) 93, 129, 418, 515
Sau96I GGNCC 1 cut(s) 23
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 142, 601
SfaNI GCATC 2 cut(s) 114, 184
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 89, 230
SphI GCATGC 1 cut(s) 266
Sse9I AATT 1 cut(s) 430
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 140, 599
StyI CCWWGG 3 cut(s) 19, 255, 301
TaaI ACNGT 1 cut(s) 545
TaqI TCGA 4 cut(s) 186, 459, 514, 547
TasI AATT 1 cut(s) 430
TatI WGTACW 1 cut(s) 493
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 2 cut(s) 369, 552
Tru9I TTAA 2 cut(s) 369, 552
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 2 cut(s) 59, 508
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 142, 323, 548
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.