FvH4_5g24680

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014216
Physical Location & Seq
Forward (+)
16038148 .. 16039286
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24680.t1

Sequence Viewer

Length: 597 bp
ATGCCGAGAAAACTAACCCATCAGAGAGGCACACACCCTTTGGTTTGGTTAGCAGCCATCATCTGCACCATAGTCTCCATTGCCGTGATCATTGCAGGCATCGTGGTTTTCGCGGGATACATGGTCATCCACCCTAGGGTGCCCTTCATCAAAGTCACCCAAGCACACCTTGAAAACCTCCAAAACGACCCGACGAGCCTGCTCGAAACTGCAATCACCATTGTTGTGAGGGCTGAGAATGACAACACCAAGGCGCATGCAAGCTTCTCGGACTTGAGCTTCACTCTCAGCTTCCAAGGGATGAAGATAGCAAGGTTGGTGGCGAACCCTTTTGATGTGAGGAAAAATGATTCGGTGGATTTCAACTATGTGGTGGAGTCATCGTCTATACCATTGAGTTCTGGGCAGGTGGATCAAGTGGACAGTTCTTTGAAGAGAGATAGAATCAGTTTCGATTTGAAGGGGAATGTTAGAGCAAGGTGGAGAGTAGGGCTGGTTGGATCAGTTAAGCTCTGGGGTCATTTGAATTGTCGATTAAACTTTCATCCATCGAATGGGAGCTACATATACTCACCTTGTAGATCCAGGGCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

199

Amino Acids

22.04

Weight (kDa)

9.84

Isoelectric Point (pI)

24.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 76 - 163 9e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 397
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 1 cut(s) 139
AccB7I CCANNNNNTGG 1 cut(s) 554
AccII CGCG 1 cut(s) 113
AciI CCGC 1 cut(s) 113
AclWI GGATC 3 cut(s) 420, 508, 576
AfiI CCNNNNNNNGG 2 cut(s) 136, 554
AgsI TTSAA 5 cut(s) 173, 364, 433, 460, 526
AjnI CCWGG 1 cut(s) 584
AluBI AGCT 5 cut(s) 264, 279, 291, 511, 561
AluI AGCT 5 cut(s) 264, 279, 291, 511, 561
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 3 cut(s) 420, 508, 576
AoxI GGCC 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 53
AspA2I CCTAGG 1 cut(s) 134
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 588
AsuHPI GGTGA 3 cut(s) 148, 208, 564
AvrII CCTAGG 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 144
BanI GGYRCC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 27, 65, 556
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 4 cut(s) 181, 215, 249, 283
BciT130I CCWGG 1 cut(s) 586
BciVI GTATCC 1 cut(s) 110
BclI TGATCA 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 1 cut(s) 54
BlnI CCTAGG 1 cut(s) 134
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 586
BmgT120I GGNCC 1 cut(s) 588
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 586
BmsI GCATC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpuEI CTTGAG 1 cut(s) 295
BsaJI CCNNGG 4 cut(s) 134, 249, 295, 585
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 554
Bse3DI GCAATG 2 cut(s) 78, 90
BseBI CCWGG 1 cut(s) 586
BseDI CCNNGG 4 cut(s) 134, 249, 295, 585
BseGI GGATG 3 cut(s) 126, 306, 544
BseLI CCNNNNNNNGG 2 cut(s) 136, 554
BseMI GCAATG 2 cut(s) 78, 90
BseMII CTCAG 2 cut(s) 225, 301
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 590
BshNI GGYRCC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 136, 554
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 590
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 4 cut(s) 87, 412, 500, 581
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 590
BspCNI CTCAG 2 cut(s) 226, 300
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 3 cut(s) 420, 508, 576
BspT107I GGYRCC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 78, 90
BssECI CCNNGG 4 cut(s) 134, 249, 295, 585
BssMI GATC 4 cut(s) 87, 412, 500, 581
BssT1I CCWWGG 3 cut(s) 134, 249, 295
Bst2UI CCWGG 1 cut(s) 586
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 428
BstC8I GCNNGC 4 cut(s) 97, 200, 258, 262
BstDEI CTNAG 2 cut(s) 234, 287
BstF5I GGATG 3 cut(s) 126, 306, 544
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 4 cut(s) 90, 415, 503, 584
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 4 cut(s) 87, 412, 500, 581
BstNI CCWGG 1 cut(s) 586
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 584
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 590
BtsCI GGATG 3 cut(s) 126, 306, 544
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 4 cut(s) 97, 200, 258, 262
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 588
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 2 cut(s) 121, 257
DdeI CTNAG 2 cut(s) 234, 287
DpnI GATC 4 cut(s) 89, 414, 502, 583
DpnII GATC 4 cut(s) 87, 412, 500, 581
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco130I CCWWGG 3 cut(s) 134, 249, 295
EcoRII CCWGG 1 cut(s) 584
EcoT14I CCWWGG 3 cut(s) 134, 249, 295
ErhI CCWWGG 3 cut(s) 134, 249, 295
FaeI CATG 2 cut(s) 124, 260
FaiI YATR 7 cut(s) 71, 122, 258, 369, 389, 566, 568
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 2 cut(s) 120, 256
FauI CCCGC 1 cut(s) 106
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 3 cut(s) 113, 313, 531
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 590
HhaI GCGC 1 cut(s) 256
Hin1II CATG 2 cut(s) 124, 260
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 3 cut(s) 350, 377, 444
HphI GGTGA 3 cut(s) 148, 208, 564
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 2 cut(s) 24, 271
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 154, 454
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 4 cut(s) 66, 95, 212, 260
HpyF3I CTNAG 2 cut(s) 234, 287
Hsp92II CATG 2 cut(s) 124, 260
HspAI GCGC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 4 cut(s) 87, 412, 500, 581
LmnI GCTCC 1 cut(s) 558
LpnPI CCDG 7 cut(s) 81, 212, 387, 392, 479, 499, 571
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 154
MalI GATC 4 cut(s) 89, 414, 502, 583
MboI GATC 4 cut(s) 87, 412, 500, 581
MboII GAAGA 2 cut(s) 316, 445
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 1 cut(s) 526
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 4 cut(s) 20, 188, 222, 333
MseI TTAA 2 cut(s) 507, 536
MslI CAYNNNNRTG 2 cut(s) 83, 224
MspR9I CCNGG 1 cut(s) 586
MvaI CCWGG 1 cut(s) 586
MvnI CGCG 1 cut(s) 113
NdeII GATC 4 cut(s) 87, 412, 500, 581
NlaIII CATG 2 cut(s) 124, 260
NlaIV GGNNCC 1 cut(s) 141
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 260
PaeI GCATGC 1 cut(s) 260
PaqCI CACCTGC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 350, 444
PflMI CCANNNNNTGG 1 cut(s) 554
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 584
PspGI CCWGG 1 cut(s) 584
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 588
PsuI RGATCY 1 cut(s) 581
RseI CAYNNNNRTG 2 cut(s) 83, 224
SaqAI TTAA 2 cut(s) 507, 536
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 4 cut(s) 87, 412, 500, 581
Sau96I GGNCC 1 cut(s) 588
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 586
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 83, 224
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SphI GCATGC 1 cut(s) 260
Sse9I AATT 1 cut(s) 526
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 584
StyI CCWWGG 3 cut(s) 134, 249, 295
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 4 cut(s) 204, 453, 532, 551
TasI AATT 1 cut(s) 526
TfiI GAWTC 2 cut(s) 350, 444
Tru1I TTAA 2 cut(s) 507, 536
Tru9I TTAA 2 cut(s) 507, 536
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 136, 317, 533
Van91I CCANNNNNTGG 1 cut(s) 554
XceI RCATGY 1 cut(s) 260
XmaJI CCTAGG 1 cut(s) 134
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.