Prupe.5G014700_v2.0.a1

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014216
Physical Location & Seq
Reverse (-)
1626245 .. 1627758
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G014700.1

Sequence Viewer

Length: 606 bp
ATGACAAGAAAGTTTTTCCATGGTGCCACCCAAAGAACCACACACCCTCTGGTTTGGTTTGCGGCTGTTATCTGCACTGTTATTGCCATAGCCGTGATCATTGCGGGGATCGCTTTGTTCGCGGGCTACATGATCATCCATCCGAGGGTGCCTTTCATCACCGTCACCTCAGCTCACCTGGACAACTTTCAAAACTCAGTGGCTGGTCTTCTTGACACAGAAATCACCATTATTGTGAAGGCTGAGAATGACAACACAAAAGCACATGCCAGCTTTTCGGATACAAGCTTCACACTGAGCTTCCAAGGCCTGAACATTGCCAGGTTGGTGGCATTGCCATTTGATGTGAAGAAAAATAGTTCGGTGGATTTTCATTATTTGGTGCAATCTTCATCGATTCCATTGAGCCCTGAGCAGATGGATCAAATAGATATTTCATTGAAGCGAGATAAAATTAGTTTCAATTTGAAGGGGAATTTGAGAGCAAGGTGGAGAGTAGGGCCGATTGGCTCTGTAAAATTCTGGGGTCATTTGAATTGTCACCTCAGGTTTCATCCTTCAAATGGAAGCTACATACACTCACCTTGTAGCTCCAGGGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

202

Amino Acids

22.33

Weight (kDa)

9.71

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 23, 148
AccII CGCG 1 cut(s) 122
AciI CCGC 3 cut(s) 62, 104, 122
AclWI GGATC 2 cut(s) 116, 429
AcsI RAATTY 2 cut(s) 475, 518
AfiI CCNNNNNNNGG 2 cut(s) 145, 563
AgsI TTSAA 6 cut(s) 191, 442, 463, 469, 535, 561
AjnI CCWGG 3 cut(s) 177, 320, 593
AluBI AGCT 6 cut(s) 173, 273, 288, 300, 570, 591
AluI AGCT 6 cut(s) 173, 273, 288, 300, 570, 591
AlwI GGATC 2 cut(s) 116, 429
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 2 cut(s) 307, 500
ApoI RAATTY 2 cut(s) 475, 518
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 6 cut(s) 151, 157, 167, 217, 533, 573
AxyI CCTNAGG 1 cut(s) 545
BanI GGYRCC 2 cut(s) 23, 148
BanII GRGCYC 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 200
BbvCI CCTCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 147, 412
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 3 cut(s) 179, 322, 595
BciVI GTATCC 1 cut(s) 274
BclI TGATCA 2 cut(s) 96, 132
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 3 cut(s) 179, 322, 595
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 2 cut(s) 25, 150
BmrFI CCNGG 3 cut(s) 179, 322, 595
BpiI GAAGAC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 577
Bpu10I CCTNAGC 2 cut(s) 169, 411
Bsa29I ATCGAT 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 19, 143, 304, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 563
Bse21I CCTNAGG 1 cut(s) 545
Bse3DI GCAATG 3 cut(s) 99, 315, 332
BseBI CCWGG 3 cut(s) 179, 322, 595
BseCI ATCGAT 1 cut(s) 395
BseDI CCNNGG 4 cut(s) 19, 143, 304, 594
BseGI GGATG 3 cut(s) 135, 139, 553
BseLI CCNNNNNNNGG 2 cut(s) 145, 563
BseMI GCAATG 3 cut(s) 99, 315, 332
BseMII CTCAG 6 cut(s) 183, 210, 234, 287, 402, 559
BsgI GTGCAG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 309, 502
BshNI GGYRCC 2 cut(s) 23, 148
BshVI ATCGAT 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 145, 563
BsnI GGCC 2 cut(s) 309, 502
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 4 cut(s) 96, 108, 132, 421
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 3 cut(s) 62, 104, 122
BspANI GGCC 2 cut(s) 309, 502
BspCNI CTCAG 6 cut(s) 182, 209, 235, 288, 403, 558
BspDI ATCGAT 1 cut(s) 395
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 25, 150
BspPI GGATC 2 cut(s) 116, 429
BspT107I GGYRCC 2 cut(s) 23, 148
BsrDI GCAATG 3 cut(s) 99, 315, 332
BssECI CCNNGG 4 cut(s) 19, 143, 304, 594
BssMI GATC 4 cut(s) 96, 108, 132, 421
BssT1I CCWWGG 2 cut(s) 19, 304
Bst2UI CCWGG 3 cut(s) 179, 322, 595
Bst4CI ACNGT 2 cut(s) 79, 163
BstC8I GCNNGC 2 cut(s) 124, 271
BstDEI CTNAG 6 cut(s) 169, 196, 243, 296, 411, 545
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 3 cut(s) 135, 139, 553
BstFNI CGCG 1 cut(s) 122
BstKTI GATC 4 cut(s) 99, 111, 135, 424
BstMBI GATC 4 cut(s) 96, 108, 132, 421
BstMWI GCNNNNNNNGC 3 cut(s) 110, 119, 306
BstNI CCWGG 3 cut(s) 179, 322, 595
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 3 cut(s) 177, 320, 593
BstUI CGCG 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 395
Bsu36I CCTNAGG 1 cut(s) 545
BsuI GTATCC 1 cut(s) 274
BsuRI GGCC 2 cut(s) 309, 502
BsuTUI ATCGAT 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 3 cut(s) 135, 139, 553
BtsIMutI CAGTG 3 cut(s) 75, 204, 293
Cac8I GCNNGC 2 cut(s) 124, 271
CaiI CAGNNNCTG 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 395
CviAII CATG 3 cut(s) 20, 130, 266
DdeI CTNAG 6 cut(s) 169, 196, 243, 296, 411, 545
DpnI GATC 4 cut(s) 98, 110, 134, 423
DpnII GATC 4 cut(s) 96, 108, 132, 421
Eco130I CCWWGG 2 cut(s) 19, 304
Eco147I AGGCCT 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 545
EcoRII CCWGG 3 cut(s) 177, 320, 593
EcoT14I CCWWGG 2 cut(s) 19, 304
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 2 cut(s) 19, 304
FaeI CATG 3 cut(s) 23, 133, 269
FaiI YATR 5 cut(s) 21, 89, 131, 267, 575
FatI CATG 3 cut(s) 19, 129, 265
FauI CCCGC 2 cut(s) 97, 115
FbaI TGATCA 2 cut(s) 96, 132
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 3 cut(s) 122, 126, 540
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 577
HaeIII GGCC 2 cut(s) 309, 502
Hin1II CATG 3 cut(s) 23, 133, 269
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 1 cut(s) 397
HphI GGTGA 6 cut(s) 151, 157, 167, 217, 533, 573
Hpy188I TCNGA 2 cut(s) 144, 280
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 3 cut(s) 232, 463, 567
HpyCH4III ACNGT 2 cut(s) 79, 163
HpyCH4V TGCA 2 cut(s) 75, 385
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 119, 306
HpyF3I CTNAG 6 cut(s) 169, 196, 243, 296, 411, 545
Hsp92II CATG 3 cut(s) 23, 133, 269
Ksp22I TGATCA 2 cut(s) 96, 132
Kzo9I GATC 4 cut(s) 96, 108, 132, 421
LmnI GCTCC 1 cut(s) 596
MaeIII GTNAC 2 cut(s) 163, 539
MalI GATC 4 cut(s) 98, 110, 134, 423
MboI GATC 4 cut(s) 96, 108, 132, 421
MboII GAAGA 3 cut(s) 200, 361, 381
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 5 cut(s) 453, 463, 475, 518, 535
MnlI CCTC 4 cut(s) 57, 138, 178, 554
MslI CAYNNNNRTG 2 cut(s) 92, 233
MspR9I CCNGG 3 cut(s) 179, 322, 595
MvaI CCWGG 3 cut(s) 179, 322, 595
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 110, 119, 306
NcoI CCATGG 1 cut(s) 19
NdeII GATC 4 cut(s) 96, 108, 132, 421
NlaIII CATG 3 cut(s) 23, 133, 269
NlaIV GGNNCC 2 cut(s) 25, 150
NmuCI GTSAC 2 cut(s) 163, 539
NspI RCATGY 1 cut(s) 269
PceI AGGCCT 1 cut(s) 309
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 1 cut(s) 64
Psp6I CCWGG 3 cut(s) 177, 320, 593
PspGI CCWGG 3 cut(s) 177, 320, 593
PspN4I GGNNCC 2 cut(s) 25, 150
PspPI GGNCC 1 cut(s) 500
PstNI CAGNNNCTG 1 cut(s) 203
RseI CAYNNNNRTG 2 cut(s) 92, 233
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 4 cut(s) 96, 108, 132, 421
Sau96I GGNCC 1 cut(s) 500
ScrFI CCNGG 3 cut(s) 179, 322, 595
SduI GDGCHC 1 cut(s) 410
SmiMI CAYNNNNRTG 2 cut(s) 92, 233
Sse9I AATT 5 cut(s) 453, 463, 475, 518, 535
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 3 cut(s) 62, 104, 122
StuI AGGCCT 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 177, 320, 593
StyI CCWWGG 2 cut(s) 19, 304
TaaI ACNGT 2 cut(s) 79, 163
TaqI TCGA 1 cut(s) 395
TasI AATT 5 cut(s) 453, 463, 475, 518, 535
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 397
TscAI CASTG 3 cut(s) 82, 204, 300
TseFI GTSAC 2 cut(s) 163, 539
Tsp45I GTSAC 2 cut(s) 163, 539
TspDTI ATGAA 5 cut(s) 145, 362, 381, 426, 542
TspRI CASTG 3 cut(s) 82, 204, 300
XapI RAATTY 2 cut(s) 475, 518
XceI RCATGY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.