MD06G1012000.v1.1

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014216
Physical Location & Seq
Reverse (-)
1504561 .. 1505175
615 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1012000.v1.1.491

Sequence Viewer

Length: 615 bp
ATGACAAATCCAAAAAAATTAATCCATGGTCCGCATCACCAAAGAACCACACACCCTTTGGTTTGGTTTGCAGCCATCATCTGCACCGTTATAGCCATAGCCGTGATCATCGCGGGCATCGCGGTGTTTGTCGGCTACATGATCATCCATCCGAGGGTGCCTTTCATCACCGTCACCTCCGCTCATCTCGACAACTTCCAAAACTCCGTGGCCGGTCTTGTTGATACGGAGATCACCATTGTGGTAAGGGCGGAGAACGACAACACCAAAGCGCACGCAGTGTATTCGGACACGAGCTTCATTCTAAGCTTCCAAGGGCTGAACATTGCCAAGCTGGTGGCGTATCCGTTTGAAGTCAAGAAAAATAGTTCTGTTGATTTTCATTACTTGGTGCAATCATCGTCGATTCCTCTGAGTCCGGAGCTGATGGATCAAGTCGACATTTCGTTGAAGCGGGACAAAATTATTTTTAACTTGAAGGGGAACCTGAGGGCAAGGTGGAGAGTAGGGCTGCTTGGTTCAGTGAAGTTCTGGTGTCACTTGAATTGTCAGCTCAAGTTTCATCCCTCAAATGGAACCTACATACGCTCTCCCTGCAGCTCAAGGGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

205

Amino Acids

22.81

Weight (kDa)

9.59

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AccBSI CCGCTC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 438
AccII CGCG 2 cut(s) 113, 122
AccIII TCCGGA 1 cut(s) 418
AciI CCGC 6 cut(s) 32, 113, 122, 180, 251, 454
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 280
AfiI CCNNNNNNNGG 2 cut(s) 154, 572
AgsI TTSAA 4 cut(s) 353, 451, 478, 544
AleI CACNNNNGTG 1 cut(s) 239
AluBI AGCT 6 cut(s) 297, 309, 334, 424, 553, 600
AluI AGCT 6 cut(s) 297, 309, 334, 424, 553, 600
AlwI GGATC 1 cut(s) 438
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 71, 511, 597
AseI ATTAAT 1 cut(s) 20
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 4 cut(s) 29, 160, 166, 226
AvaII GGWCC 1 cut(s) 29
AxyI CCTNAGG 1 cut(s) 488
BanI GGYRCC 1 cut(s) 157
BauI CACGAG 1 cut(s) 292
BbvI GCAGC 3 cut(s) 83, 498, 609
BccI CCATC 3 cut(s) 83, 156, 421
BceAI ACGGC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 267, 301
BciVI GTATCC 1 cut(s) 354
BclI TGATCA 2 cut(s) 105, 141
BfmI CTRYAG 1 cut(s) 595
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 3 cut(s) 72, 512, 598
BlsI GCNGC 3 cut(s) 73, 513, 599
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 3 cut(s) 159, 485, 577
BmsI GCATC 2 cut(s) 43, 126
BpuEI CTTGAG 2 cut(s) 539, 586
BsaJI CCNNGG 4 cut(s) 25, 152, 207, 313
BsaWI WCCGGW 1 cut(s) 418
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 572
Bse118I RCCGGY 1 cut(s) 212
Bse21I CCTNAGG 1 cut(s) 488
Bse3DI GCAATG 1 cut(s) 324
BseAI TCCGGA 1 cut(s) 418
BseDI CCNNGG 4 cut(s) 25, 152, 207, 313
BseGI GGATG 3 cut(s) 144, 148, 562
BseLI CCNNNNNNNGG 2 cut(s) 154, 572
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 404, 479
BseXI GCAGC 3 cut(s) 83, 498, 609
BsgI GTGCAG 1 cut(s) 67
Bsh1236I CGCG 2 cut(s) 113, 122
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 157
BsiSI CCGG 2 cut(s) 213, 419
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 2 cut(s) 154, 572
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 4 cut(s) 105, 141, 231, 430
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 6 cut(s) 32, 113, 122, 180, 251, 454
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 405, 480
BspEI TCCGGA 1 cut(s) 418
BspFNI CGCG 2 cut(s) 113, 122
BspLI GGNNCC 3 cut(s) 159, 485, 577
BspMAI CTGCAG 1 cut(s) 599
BspPI GGATC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 157
BsrBI CCGCTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 4 cut(s) 25, 152, 207, 313
BssMI GATC 4 cut(s) 105, 141, 231, 430
BssSI CACGAG 1 cut(s) 292
BssT1I CCWWGG 2 cut(s) 25, 313
Bst2BI CACGAG 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 88, 172
BstC8I GCNNGC 2 cut(s) 115, 276
BstDEI CTNAG 3 cut(s) 305, 413, 488
BstDSI CCRYGG 2 cut(s) 25, 207
BstF5I GGATG 3 cut(s) 144, 148, 562
BstFNI CGCG 2 cut(s) 113, 122
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 4 cut(s) 108, 144, 234, 433
BstMBI GATC 4 cut(s) 105, 141, 231, 430
BstMWI GCNNNNNNNGC 2 cut(s) 119, 594
BstSFI CTRYAG 1 cut(s) 595
BstUI CGCG 2 cut(s) 113, 122
BstV1I GCAGC 3 cut(s) 83, 498, 609
BstXI CCANNNNNNTGG 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 488
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 212
BtgI CCRYGG 2 cut(s) 25, 207
BtgZI GCGATG 2 cut(s) 94, 103
BtsCI GGATG 3 cut(s) 144, 148, 562
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 285, 528
Cac8I GCNNGC 2 cut(s) 115, 276
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 29
CviAII CATG 2 cut(s) 26, 139
DdeI CTNAG 3 cut(s) 305, 413, 488
DpnI GATC 4 cut(s) 107, 143, 233, 432
DpnII GATC 4 cut(s) 105, 141, 231, 430
DraIII CACNNNGTG 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 25, 313
Eco47I GGWCC 1 cut(s) 29
Eco81I CCTNAGG 1 cut(s) 488
EcoT14I CCWWGG 2 cut(s) 25, 313
ErhI CCWWGG 2 cut(s) 25, 313
FaeI CATG 2 cut(s) 29, 142
FaiI YATR 5 cut(s) 27, 92, 98, 140, 584
FaqI GGGAC 1 cut(s) 470
FatI CATG 2 cut(s) 25, 138
FauI CCCGC 2 cut(s) 106, 447
FbaI TGATCA 2 cut(s) 105, 141
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 3 cut(s) 72, 512, 598
FokI GGATG 3 cut(s) 131, 135, 549
Fsp4HI GCNGC 3 cut(s) 72, 512, 598
GlaI GCGC 1 cut(s) 273
GluI GCNGC 3 cut(s) 72, 512, 598
HaeIII GGCC 1 cut(s) 212
HapII CCGG 2 cut(s) 213, 419
HhaI GCGC 1 cut(s) 274
Hin1II CATG 2 cut(s) 29, 142
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 2 cut(s) 406, 415
HpaII CCGG 2 cut(s) 213, 419
HphI GGTGA 4 cut(s) 29, 160, 166, 226
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 3 cut(s) 153, 289, 414
Hpy188III TCNNGA 3 cut(s) 188, 358, 419
Hpy8I GTNNAC 1 cut(s) 439
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 1 cut(s) 472
HpyCH4III ACNGT 2 cut(s) 88, 172
HpyCH4V TGCA 4 cut(s) 71, 84, 394, 597
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 594
HpyF3I CTNAG 3 cut(s) 305, 413, 488
Hsp92II CATG 2 cut(s) 29, 142
HspAI GCGC 1 cut(s) 272
Kpn2I TCCGGA 1 cut(s) 418
Ksp22I TGATCA 2 cut(s) 105, 141
Kzo9I GATC 4 cut(s) 105, 141, 231, 430
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 6 cut(s) 226, 320, 432, 500, 517, 607
Lsp1109I GCAGC 3 cut(s) 83, 498, 609
LweI GCATC 2 cut(s) 43, 126
MaeIII GTNAC 2 cut(s) 172, 536
MalI GATC 4 cut(s) 107, 143, 233, 432
MbiI CCGCTC 1 cut(s) 182
MboI GATC 4 cut(s) 105, 141, 231, 430
MluCI AATT 3 cut(s) 17, 462, 544
MlyI GAGTC 1 cut(s) 424
MnlI CCTC 5 cut(s) 147, 187, 420, 483, 577
MroI TCCGGA 1 cut(s) 418
MseI TTAA 2 cut(s) 20, 471
MslI CAYNNNNRTG 3 cut(s) 101, 122, 239
MspI CCGG 2 cut(s) 213, 419
MvnI CGCG 2 cut(s) 113, 122
MwoI GCNNNNNNNGC 2 cut(s) 119, 594
NcoI CCATGG 1 cut(s) 25
NdeII GATC 4 cut(s) 105, 141, 231, 430
NlaIII CATG 2 cut(s) 29, 142
NlaIV GGNNCC 3 cut(s) 159, 485, 577
NmuCI GTSAC 2 cut(s) 172, 536
OliI CACNNNNGTG 1 cut(s) 239
PfeI GAWTC 1 cut(s) 406
PkrI GCNGC 3 cut(s) 73, 513, 599
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PshBI ATTAAT 1 cut(s) 20
PspN4I GGNNCC 3 cut(s) 159, 485, 577
PspPI GGNCC 1 cut(s) 29
PstI CTGCAG 1 cut(s) 599
RseI CAYNNNNRTG 3 cut(s) 101, 122, 239
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 2 cut(s) 20, 471
SatI GCNGC 3 cut(s) 72, 512, 598
Sau3AI GATC 4 cut(s) 105, 141, 231, 430
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 424
SfaNI GCATC 2 cut(s) 43, 126
SfcI CTRYAG 1 cut(s) 595
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 3 cut(s) 101, 122, 239
SmlI CTYRAG 2 cut(s) 554, 601
SmoI CTYRAG 2 cut(s) 554, 601
Sse9I AATT 3 cut(s) 17, 462, 544
SsiI CCGC 6 cut(s) 32, 113, 122, 180, 251, 454
StyI CCWWGG 2 cut(s) 25, 313
TaaI ACNGT 2 cut(s) 88, 172
TaqI TCGA 3 cut(s) 189, 404, 438
TasI AATT 3 cut(s) 17, 462, 544
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 2 cut(s) 20, 471
Tru9I TTAA 2 cut(s) 20, 471
TscAI CASTG 2 cut(s) 285, 528
TseFI GTSAC 2 cut(s) 172, 536
TseI GCWGC 3 cut(s) 71, 511, 597
Tsp45I GTSAC 2 cut(s) 172, 536
TspDTI ATGAA 4 cut(s) 154, 289, 371, 551
TspGWI ACGGA 3 cut(s) 196, 242, 336
TspRI CASTG 2 cut(s) 285, 528
VpaK11BI GGWCC 1 cut(s) 29
VspI ATTAAT 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.