RLG00000002695

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014216
Physical Location & Seq
Reverse (-)
38260616 .. 38261218
603 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002695

Sequence Viewer

Length: 603 bp
ATGCCGAGAAAACTAATCCATGGTCCACAGAGAAGCACACACCCTTTGGTTTGGTTTGCAGCCATCATCTGCACCATCATCTCCATTGCTGTGATCATTGCGGGCATCGTGGTTTTCGTGGGCTACATGGTCATCCACCCCAGGGTACCCTTCATCAAGGTCACCACAGCACACCTTGACAAGTTCGAAAGCGATGCGACAAGCCTGCTAGACACTGCAATCACCATTGTTGTGAGGGCTGAGAACGACAACACCAAGGCGCATGCAAGCTTCTCGGACACGAGCTTCACTCTCAGCTTCCAAGGGATGAACATAGCGAAGTTGGTGGCGTACCCTTTTGAGGTGAGGAAGAATAGTTCTGTGGATTTTAACTATGTGGTGGAGTCCTCGTCCATACCATTGAGTTCTGCGCAGGTGGATCAAGTGGACTATTCTTTGAAGAGAGATAGAATCAGTTTCGATTTGAAGGGGAATGTTAGAGCAAGGTGGAGAGTAGGGCTGCTTGGATCAGTTAGGTTCTGGGGTCATTTGAACTGTCGACTCAACTTTCATGCATTGAATGGGAGCTACATATACTCACCTTGTAGCTCCAGGGCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

201

Amino Acids

22.33

Weight (kDa)

9.63

Isoelectric Point (pI)

23.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45320
fragaria_vesca FvH4_5g24680
malus_domestica MD06G1012000.v1.1 MD16G1286800.v1.1
prunus_persica Prupe.5G014700_v2.0.a1
pyrus_communis pycom06g01010 pycom16g25730
rosa_chinensis RchiOBHm_Chr7g0215061
rosa_laevigata RLG00000002695
rosa_multiflora Rmu_sc0005476.1_g000013
rosa_roxburghii Rroxscaffold_3G00244620
rosa_rugosa Rorug07G0149900
rosa_samantha Rh7AG286900 Rh7BG278400 Rh7CG306300 Rh7DG290400
rosa_wichuraiana Rw7G024470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 403
Acc16I TGCGCA 1 cut(s) 411
Acc36I ACCTGC 1 cut(s) 403
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 538
AciI CCGC 1 cut(s) 101
AclWI GGATC 2 cut(s) 426, 514
AfaI GTAC 2 cut(s) 147, 332
AfiI CCNNNNNNNGG 2 cut(s) 142, 340
AgsI TTSAA 4 cut(s) 439, 466, 532, 559
AjnI CCWGG 2 cut(s) 140, 590
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 5 cut(s) 270, 285, 297, 567, 588
AluI AGCT 5 cut(s) 270, 285, 297, 567, 588
AlwI GGATC 2 cut(s) 426, 514
ApeKI GCWGC 2 cut(s) 59, 499
Asp718I GGTACC 1 cut(s) 145
AspLEI GCGC 2 cut(s) 262, 412
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 4 cut(s) 154, 214, 355, 570
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 145
BauI CACGAG 1 cut(s) 280
BbvI GCAGC 2 cut(s) 71, 486
BccI CCATC 2 cut(s) 71, 83
BcgI CGANNNNNNTGC 6 cut(s) 176, 187, 210, 221, 255, 289
BciT130I CCWGG 2 cut(s) 142, 592
BclI TGATCA 1 cut(s) 93
BfaI CTAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 2 cut(s) 60, 500
BlsI GCNGC 2 cut(s) 61, 501
Bme1390I CCNGG 2 cut(s) 142, 592
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 142, 592
BmsI GCATC 2 cut(s) 114, 184
BplI GAGNNNNNCTC 2 cut(s) 274, 306
BpmI CTGGAG 1 cut(s) 574
Bpu14I TTCGAA 1 cut(s) 186
BsaJI CCNNGG 6 cut(s) 19, 140, 141, 255, 301, 591
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 340
Bse3DI GCAATG 2 cut(s) 84, 96
BseBI CCWGG 2 cut(s) 142, 592
BseDI CCNNGG 6 cut(s) 19, 140, 141, 255, 301, 591
BseGI GGATG 2 cut(s) 132, 312
BseLI CCNNNNNNNGG 2 cut(s) 142, 340
BseMI GCAATG 2 cut(s) 84, 96
BseMII CTCAG 2 cut(s) 231, 307
BseXI GCAGC 2 cut(s) 71, 486
BsgI GTGCAG 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 142, 340
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 3 cut(s) 93, 418, 506
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 1 cut(s) 101
BspCNI CTCAG 2 cut(s) 232, 306
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 426, 514
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 145
BsrDI GCAATG 2 cut(s) 84, 96
BssECI CCNNGG 6 cut(s) 19, 140, 141, 255, 301, 591
BssMI GATC 3 cut(s) 93, 418, 506
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 3 cut(s) 19, 255, 301
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 142, 592
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 103, 206, 264, 268
BstDEI CTNAG 3 cut(s) 240, 293, 597
BstDSI CCRYGG 1 cut(s) 19
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 2 cut(s) 132, 312
BstHHI GCGC 2 cut(s) 262, 412
BstKTI GATC 3 cut(s) 96, 421, 509
BstMBI GATC 3 cut(s) 93, 418, 506
BstNI CCWGG 2 cut(s) 142, 592
BstNSI RCATGY 1 cut(s) 266
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 140, 590
BstV1I GCAGC 2 cut(s) 71, 486
BtgI CCRYGG 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 2 cut(s) 132, 312
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 4 cut(s) 103, 206, 264, 268
CfoI GCGC 2 cut(s) 262, 412
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 146, 331
CviAII CATG 4 cut(s) 20, 127, 263, 551
CviQI GTAC 2 cut(s) 146, 331
DdeI CTNAG 3 cut(s) 240, 293, 597
DpnI GATC 3 cut(s) 95, 420, 508
DpnII GATC 3 cut(s) 93, 418, 506
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 3 cut(s) 19, 255, 301
Eco47I GGWCC 1 cut(s) 23
Eco91I GGTNACC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 140, 590
EcoT14I CCWWGG 3 cut(s) 19, 255, 301
EcoT22I ATGCAT 1 cut(s) 556
ErhI CCWWGG 3 cut(s) 19, 255, 301
FaeI CATG 4 cut(s) 23, 130, 266, 554
FaiI YATR 9 cut(s) 21, 128, 264, 314, 375, 395, 552, 572, 574
FatI CATG 4 cut(s) 19, 126, 262, 550
FauI CCCGC 1 cut(s) 94
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 60, 500
FokI GGATG 2 cut(s) 119, 319
Fsp4HI GCNGC 2 cut(s) 60, 500
FspBI CTAG 1 cut(s) 209
FspI TGCGCA 1 cut(s) 411
GlaI GCGC 2 cut(s) 261, 411
GluI GCNGC 2 cut(s) 60, 500
GsuI CTGGAG 1 cut(s) 574
HhaI GCGC 2 cut(s) 262, 412
Hin1II CATG 4 cut(s) 23, 130, 266, 554
Hin6I GCGC 2 cut(s) 260, 410
HinP1I GCGC 2 cut(s) 260, 410
HincII GTYRAC 1 cut(s) 539
HindII GTYRAC 1 cut(s) 539
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 3 cut(s) 383, 450, 540
HphI GGTGA 4 cut(s) 154, 214, 355, 570
Hpy166II GTNNAC 3 cut(s) 26, 427, 539
Hpy188I TCNGA 1 cut(s) 277
Hpy8I GTNNAC 3 cut(s) 26, 427, 539
HpyAV CCTTC 2 cut(s) 160, 460
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4V TGCA 5 cut(s) 59, 72, 218, 266, 554
HpyF3I CTNAG 3 cut(s) 240, 293, 597
Hsp92II CATG 4 cut(s) 23, 130, 266, 554
HspAI GCGC 2 cut(s) 260, 410
KpnI GGTACC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 93, 418, 506
LmnI GCTCC 2 cut(s) 564, 593
LpnPI CCDG 6 cut(s) 127, 154, 218, 398, 505, 577
Lsp1109I GCAGC 2 cut(s) 71, 486
LweI GCATC 2 cut(s) 114, 184
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 95, 420, 508
MboI GATC 3 cut(s) 93, 418, 506
MboII GAAGA 2 cut(s) 361, 451
MlyI GAGTC 2 cut(s) 392, 534
MnlI CCTC 4 cut(s) 228, 334, 339, 397
Mph1103I ATGCAT 1 cut(s) 556
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 2 cut(s) 89, 230
MspR9I CCNGG 2 cut(s) 142, 592
MvaI CCWGG 2 cut(s) 142, 592
NcoI CCATGG 1 cut(s) 19
NdeII GATC 3 cut(s) 93, 418, 506
NlaIII CATG 4 cut(s) 23, 130, 266, 554
NlaIV GGNNCC 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 160
NsbI TGCGCA 1 cut(s) 411
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 1 cut(s) 266
NspV TTCGAA 1 cut(s) 186
PaeI GCATGC 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 403
PasI CCCWGGG 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 2 cut(s) 61, 501
PleI GAGTC 2 cut(s) 391, 534
PpsI GAGTC 2 cut(s) 391, 534
Psp6I CCWGG 2 cut(s) 140, 590
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 2 cut(s) 140, 590
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 23
RsaI GTAC 2 cut(s) 147, 332
RsaNI GTAC 2 cut(s) 146, 331
RseI CAYNNNNRTG 2 cut(s) 89, 230
SalI GTCGAC 1 cut(s) 537
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 2 cut(s) 60, 500
Sau3AI GATC 3 cut(s) 93, 418, 506
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 2 cut(s) 392, 534
ScrFI CCNGG 2 cut(s) 142, 592
SfaNI GCATC 2 cut(s) 114, 184
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 89, 230
SphI GCATGC 1 cut(s) 266
SsiI CCGC 1 cut(s) 101
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 140, 590
StyI CCWWGG 3 cut(s) 19, 255, 301
TaaI ACNGT 1 cut(s) 536
TaqI TCGA 3 cut(s) 186, 459, 538
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 2 cut(s) 59, 499
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 142, 323, 539
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 538
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.